Prupe.8G218100_v2.0.a1

Heterogeneous nuclear ribonucleoprotein 1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
19906578 .. 19909955
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G218100.1

Sequence Viewer

Length: 1305 bp
ATGGACTCAGACGAAGGTAAGCTGTTCATAGGAGGGCTGGCCTGGGACACCACAGAGGACAAGCTCACCGACTACTTCAACCAGTACGGTGACGTCACCCAGACCGTCATCATGCGCGACAAGACCACTGGCCGGCCCAGGGGCTTCGGCTTCGTTGTCTTCTCTGATCCCTCTGTGCTCGATAGGGTCCTCAACGACAAGCACACCATTGATGGCCGACTGGTGGAAGCAAAAAAGGCCTTATCAAGAGAAGAACAGCAGACATCCAATAGAAGTGGAAATTTTAATACCACCAGAAGCTCTGGAGGGGGAGGAAATTTTAAGACCAAGAAAATATTTGTTGGAGGATTGCCTTCCACACTGACAGAAGATGGATTTCGTCAATTCTTTGAAAATTATGGCACTGTCACTGATGTAGTAATAATGTATGACCAGAATACTCAACGACCCCGTGGTTTTGGTTTCATAACATTTGATACTGAAGATGCAGTTGATAGAGTACTACACAAGAACTACCATGAGTTGAATGGTAAACTTGTAGAGGTAAAGCGAGCACTTCCTAAAGACGCAAATCCTGGTGGTGGGGGCCGTGGTGGGGGTTTTCAAGGTTACAATGCCTCTGGTGCCAGTACAAATGCATTTGATGGCCGCATGGATGGCAATAGGTACATGCAGCCACAAACTACAGCAGGTGGTTTCCCTCCGTATTCTGGTTATGGTGCGCCAGGGTATGGTTATGGGGCGGCAAATACAGGGGTTGGTTATGGAGGTTATGGAAGTTATGGTCTTGGTGGTTATGGAAGTGCCAATACTGGTTTTGGTGGTCCTGCAGGATCATATGGAAATCCAAATGCCCCTAATGCTGGCTATGTTAGTGGGGCACCTGCTGCATTGAAAAGTACTTGGAGCAACCAGACTCCTTCTGGGTATGGTGCTTCTGGTTATGGGGCTGCAGCTCCTTGGAGTGCTCCTGGTGGAAGTGGTGCTCCTTCTGCTCCAAGGGGTCAATCCCCAAGTGGGGCCTCTGGTTACGGAAATCAAGGTTATGGGTATGGAAATTATGGCGGGAGTTACGCTTCTTATCCTGGTGGATACGGGAGCTCTGGTGGGCGTGGTGGAAGTACCCCAACTAGCAACTCTGGTGGTAGTGCTAGCGGTGGAGAGCAACAAGGGACCCGTGGTGGCTACATGGGGAGTGGCTATGGCGACACCAATGGAAATTCAGGGTACTCTAATGCATCATGGAGATCTGATCCTTCACAGGCCACTGGTGGCTATGGTGGTTCTCAGTCCAGGCAGGCCTAA

Protein Analysis

435

Amino Acids

44.63

Weight (kDa)

8.39

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 680, 892
AatII GACGTC 1 cut(s) 96
Acc36I ACCTGC 2 cut(s) 680, 892
AccB1I GGYRCC 2 cut(s) 623, 880
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 1 cut(s) 117
AciI CCGC 4 cut(s) 649, 743, 1065, 1155
AclWI GGATC 3 cut(s) 161, 841, 1247
AcoI YGGCCR 3 cut(s) 130, 214, 646
AcsI RAATTY 3 cut(s) 280, 316, 1219
AcuI CTGAAG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 7 cut(s) 86, 501, 631, 668, 901, 1123, 1229
AgsI TTSAA 5 cut(s) 79, 392, 526, 605, 895
AjnI CCWGG 7 cut(s) 41, 137, 574, 724, 970, 1084, 1292
AluBI AGCT 5 cut(s) 22, 64, 300, 956, 1101
AluI AGCT 5 cut(s) 22, 64, 300, 956, 1101
Alw21I GWGCWC 5 cut(s) 180, 556, 970, 988, 1103
AlwI GGATC 3 cut(s) 161, 841, 1247
ApeKI GCWGC 4 cut(s) 673, 887, 950, 953
ApoI RAATTY 3 cut(s) 280, 316, 1219
AspLEI GCGC 2 cut(s) 117, 724
AspS9I GGNCC 6 cut(s) 135, 187, 586, 824, 1020, 1173
AsuHPI GGTGA 3 cut(s) 58, 88, 101
AsuNHI GCTAGC 1 cut(s) 1151
AvaII GGWCC 3 cut(s) 187, 824, 1173
BaeGI GKGCMC 1 cut(s) 883
BanI GGYRCC 2 cut(s) 623, 880
BanII GRGCYC 1 cut(s) 1103
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 5 cut(s) 180, 556, 970, 988, 1103
BbvI GCAGC 4 cut(s) 685, 874, 937, 965
BccI CCATC 4 cut(s) 206, 365, 638, 650
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
BciVI GTATCC 1 cut(s) 1085
BfaI CTAG 2 cut(s) 1131, 1152
BfmI CTRYAG 3 cut(s) 684, 828, 951
BfuAI ACCTGC 2 cut(s) 680, 892
BfuI GTATCC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 1247
BisI GCNGC 6 cut(s) 649, 674, 744, 888, 951, 954
BlsI GCNGC 6 cut(s) 650, 675, 745, 889, 952, 955
BmcAI AGTACT 2 cut(s) 501, 901
Bme1390I CCNGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
Bme18I GGWCC 3 cut(s) 187, 824, 1173
BmgT120I GGNCC 6 cut(s) 135, 187, 586, 824, 1020, 1173
BmiI GGNNCC 7 cut(s) 188, 587, 625, 882, 1021, 1174, 1175
BmrFI CCNGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
BmsI GCATC 2 cut(s) 475, 1247
BmtI GCTAGC 1 cut(s) 1155
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 9 cut(s) 42, 137, 138, 451, 589, 725, 959, 998, 1177
BsaXI ACNNNNNCTCC 2 cut(s) 1090, 1120
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 6 cut(s) 82, 133, 225, 627, 817, 1273
BseBI CCWGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
BseDI CCNNGG 9 cut(s) 42, 137, 138, 451, 589, 725, 959, 998, 1177
BseGI GGATG 2 cut(s) 263, 661
BseMII CTCAG 2 cut(s) 21, 1301
BseNI ACTGG 6 cut(s) 82, 133, 225, 627, 817, 1273
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 4 cut(s) 685, 874, 937, 965
Bsh1236I CGCG 1 cut(s) 117
BshNI GGYRCC 2 cut(s) 623, 880
BsiHKAI GWGCWC 5 cut(s) 180, 556, 970, 988, 1103
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 59, 1186
BsmFI GGGAC 2 cut(s) 59, 1186
Bsp1286I GDGCHC 6 cut(s) 180, 556, 883, 970, 988, 1103
Bsp143I GATC 4 cut(s) 166, 833, 1247, 1252
BspACI CCGC 4 cut(s) 649, 743, 1065, 1155
BspCNI CTCAG 2 cut(s) 20, 1300
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 7 cut(s) 188, 587, 625, 882, 1021, 1174, 1175
BspMAI CTGCAG 2 cut(s) 832, 955
BspMI ACCTGC 2 cut(s) 680, 892
BspOI GCTAGC 1 cut(s) 1155
BspPI GGATC 3 cut(s) 161, 841, 1247
BspT107I GGYRCC 2 cut(s) 623, 880
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 6 cut(s) 82, 133, 225, 627, 817, 1273
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 9 cut(s) 42, 137, 138, 451, 589, 725, 959, 998, 1177
BssMI GATC 4 cut(s) 166, 833, 1247, 1252
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 959, 998
Bst2UI CCWGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
Bst4CI ACNGT 3 cut(s) 89, 106, 406
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 6 cut(s) 39, 134, 552, 865, 1153, 1299
BstDEI CTNAG 2 cut(s) 7, 1287
BstDSI CCRYGG 3 cut(s) 451, 589, 1177
BstF5I GGATG 2 cut(s) 263, 661
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 2 cut(s) 117, 724
BstKTI GATC 4 cut(s) 169, 836, 1250, 1255
BstMBI GATC 4 cut(s) 166, 833, 1247, 1252
BstMWI GCNNNNNNNGC 6 cut(s) 236, 623, 657, 860, 887, 992
BstNI CCWGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 7 cut(s) 41, 137, 574, 724, 970, 1084, 1292
BstSFI CTRYAG 3 cut(s) 684, 828, 951
BstSLI GKGCMC 1 cut(s) 883
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 685, 874, 937, 965
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 1247
BstYI RGATCY 1 cut(s) 1247
BsuI GTATCC 1 cut(s) 1085
BtgI CCRYGG 3 cut(s) 451, 589, 1177
BtsCI GGATG 2 cut(s) 263, 661
BtsIMutI CAGTG 5 cut(s) 126, 359, 402, 408, 1266
BveI ACCTGC 2 cut(s) 680, 892
Cac8I GCNNGC 6 cut(s) 39, 134, 552, 865, 1153, 1299
CfoI GCGC 2 cut(s) 117, 724
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 6 cut(s) 135, 187, 586, 824, 1020, 1173
CseI GACGC 1 cut(s) 575
Csp6I GTAC 7 cut(s) 85, 500, 630, 667, 900, 1122, 1228
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 1123, 1158
CviAII CATG 6 cut(s) 112, 518, 652, 670, 1189, 1242
CviQI GTAC 7 cut(s) 85, 500, 630, 667, 900, 1122, 1228
DdeI CTNAG 2 cut(s) 7, 1287
DpnI GATC 4 cut(s) 168, 835, 1249, 1254
DpnII GATC 4 cut(s) 166, 833, 1247, 1252
EaeI YGGCCR 3 cut(s) 130, 214, 646
Ecl136II GAGCTC 1 cut(s) 1101
Eco130I CCWWGG 2 cut(s) 959, 998
Eco147I AGGCCT 2 cut(s) 239, 1301
Eco24I GRGCYC 1 cut(s) 1103
Eco47I GGWCC 3 cut(s) 187, 824, 1173
Eco53kI GAGCTC 1 cut(s) 1101
Eco57I CTGAAG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 1101
EcoO109I RGGNCCY 3 cut(s) 187, 1020, 1173
EcoRII CCWGG 7 cut(s) 41, 137, 574, 724, 970, 1084, 1292
EcoT14I CCWWGG 2 cut(s) 959, 998
EcoT22I ATGCAT 2 cut(s) 640, 1240
EcoT38I GRGCYC 1 cut(s) 1103
ErhI CCWWGG 2 cut(s) 959, 998
FaeI CATG 6 cut(s) 115, 521, 655, 673, 1192, 1245
FaqI GGGAC 2 cut(s) 59, 1186
FatI CATG 6 cut(s) 111, 517, 651, 669, 1188, 1241
FauI CCCGC 1 cut(s) 1058
FauNDI CATATG 1 cut(s) 838
Fnu4HI GCNGC 6 cut(s) 649, 674, 744, 888, 951, 954
FokI GGATG 2 cut(s) 250, 668
FriOI GRGCYC 1 cut(s) 1103
FseI GGCCGGCC 1 cut(s) 136
Fsp4HI GCNGC 6 cut(s) 649, 674, 744, 888, 951, 954
FspBI CTAG 2 cut(s) 1131, 1152
GlaI GCGC 2 cut(s) 116, 723
GluI GCNGC 6 cut(s) 649, 674, 744, 888, 951, 954
GsuI CTGGAG 1 cut(s) 324
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 575
HhaI GCGC 2 cut(s) 117, 724
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 115, 521, 655, 673, 1192, 1245
Hin6I GCGC 2 cut(s) 115, 722
HinP1I GCGC 2 cut(s) 115, 722
HinfI GANTC 2 cut(s) 5, 916
HpaII CCGG 1 cut(s) 133
HphI GGTGA 3 cut(s) 58, 88, 101
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 3 cut(s) 10, 166, 1252
Hpy188III TCNNGA 2 cut(s) 246, 303
Hpy8I GTNNAC 1 cut(s) 533
HpyAV CCTTC 5 cut(s) 8, 363, 930, 999, 1266
HpyCH4III ACNGT 3 cut(s) 89, 106, 406
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 7 cut(s) 488, 638, 673, 830, 890, 953, 1238
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 623, 657, 860, 887, 992
HpyF3I CTNAG 2 cut(s) 7, 1287
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 115, 521, 655, 673, 1192, 1245
HspAI GCGC 2 cut(s) 115, 722
KflI GGGWCCC 1 cut(s) 1173
KroI GCCGGC 1 cut(s) 132
KroNI GCCGGC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 166, 833, 1247, 1252
LmnI GCTCC 6 cut(s) 906, 961, 973, 991, 1000, 1098
Lsp1109I GCAGC 4 cut(s) 685, 874, 937, 965
LweI GCATC 2 cut(s) 475, 1247
MaeI CTAG 2 cut(s) 1131, 1152
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 6 cut(s) 89, 94, 406, 608, 1028, 1070
MalI GATC 4 cut(s) 168, 835, 1249, 1254
MboI GATC 4 cut(s) 166, 833, 1247, 1252
MboII GAAGA 4 cut(s) 151, 263, 380, 494
MflI RGATCY 1 cut(s) 1247
MhlI GDGCHC 6 cut(s) 180, 556, 883, 970, 988, 1103
MluCI AATT 6 cut(s) 280, 316, 383, 394, 1057, 1219
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 1 cut(s) 322
Mph1103I ATGCAT 2 cut(s) 640, 1240
MroNI GCCGGC 1 cut(s) 132
MseI TTAA 2 cut(s) 285, 321
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
MvaI CCWGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 6 cut(s) 236, 623, 657, 860, 887, 992
NaeI GCCGGC 1 cut(s) 134
NdeI CATATG 1 cut(s) 838
NdeII GATC 4 cut(s) 166, 833, 1247, 1252
NgoMIV GCCGGC 1 cut(s) 132
NheI GCTAGC 1 cut(s) 1151
NlaIII CATG 6 cut(s) 115, 521, 655, 673, 1192, 1245
NlaIV GGNNCC 7 cut(s) 188, 587, 625, 882, 1021, 1174, 1175
NmuCI GTSAC 3 cut(s) 89, 94, 406
NsiI ATGCAT 2 cut(s) 640, 1240
NspI RCATGY 1 cut(s) 673
PaqCI CACCTGC 2 cut(s) 680, 892
PasI CCCWGGG 1 cut(s) 138
PceI AGGCCT 2 cut(s) 239, 1301
PdiI GCCGGC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 731
PkrI GCNGC 6 cut(s) 650, 675, 745, 889, 952, 955
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
PpuMI RGGWCCY 2 cut(s) 187, 1173
Psp124BI GAGCTC 1 cut(s) 1103
Psp5II RGGWCCY 2 cut(s) 187, 1173
Psp6I CCWGG 7 cut(s) 41, 137, 574, 724, 970, 1084, 1292
PspGI CCWGG 7 cut(s) 41, 137, 574, 724, 970, 1084, 1292
PspN4I GGNNCC 7 cut(s) 188, 587, 625, 882, 1021, 1174, 1175
PspPI GGNCC 6 cut(s) 135, 187, 586, 824, 1020, 1173
PspPPI RGGWCCY 2 cut(s) 187, 1173
PstI CTGCAG 2 cut(s) 832, 955
PsuI RGATCY 1 cut(s) 1247
RigI GGCCGGCC 1 cut(s) 136
RsaI GTAC 7 cut(s) 86, 501, 631, 668, 901, 1123, 1229
RsaNI GTAC 7 cut(s) 85, 500, 630, 667, 900, 1122, 1228
SacI GAGCTC 1 cut(s) 1103
SaqAI TTAA 2 cut(s) 285, 321
SatI GCNGC 6 cut(s) 649, 674, 744, 888, 951, 954
Sau3AI GATC 4 cut(s) 166, 833, 1247, 1252
Sau96I GGNCC 6 cut(s) 135, 187, 586, 824, 1020, 1173
SbfI CCTGCAGG 1 cut(s) 832
ScaI AGTACT 2 cut(s) 501, 901
SchI GAGTC 1 cut(s) 910
ScrFI CCNGG 7 cut(s) 43, 139, 576, 726, 972, 1086, 1294
SdaI CCTGCAGG 1 cut(s) 832
SduI GDGCHC 6 cut(s) 180, 556, 883, 970, 988, 1103
SfaNI GCATC 2 cut(s) 475, 1247
SfcI CTRYAG 3 cut(s) 684, 828, 951
SinI GGWCC 3 cut(s) 187, 824, 1173
Sse8387I CCTGCAGG 1 cut(s) 832
Sse9I AATT 6 cut(s) 280, 316, 383, 394, 1057, 1219
SseBI AGGCCT 2 cut(s) 239, 1301
SsiI CCGC 4 cut(s) 649, 743, 1065, 1155
SspI AATATT 1 cut(s) 336
SspMI CTAG 2 cut(s) 1131, 1152
SstI GAGCTC 1 cut(s) 1103
StuI AGGCCT 2 cut(s) 239, 1301
StyD4I CCNGG 7 cut(s) 41, 137, 574, 724, 970, 1084, 1292
StyI CCWWGG 2 cut(s) 959, 998
TaaI ACNGT 3 cut(s) 89, 106, 406
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 180
TasI AATT 6 cut(s) 280, 316, 383, 394, 1057, 1219
TatI WGTACW 3 cut(s) 499, 629, 899
TauI GCSGC 2 cut(s) 651, 746
Tru1I TTAA 2 cut(s) 285, 321
Tru9I TTAA 2 cut(s) 285, 321
TscAI CASTG 5 cut(s) 133, 366, 409, 415, 1273
TseFI GTSAC 3 cut(s) 89, 94, 406
TseI GCWGC 4 cut(s) 673, 887, 950, 953
Tsp45I GTSAC 3 cut(s) 89, 94, 406
TspDTI ATGAA 2 cut(s) 16, 454
TspGWI ACGGA 2 cut(s) 693, 1047
TspRI CASTG 5 cut(s) 133, 366, 409, 415, 1273
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 187, 824, 1173
XapI RAATTY 3 cut(s) 280, 316, 1219
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 2 cut(s) 524, 920
XspI CTAG 2 cut(s) 1131, 1152
ZraI GACGTC 1 cut(s) 94
ZrmI AGTACT 2 cut(s) 501, 901
Zsp2I ATGCAT 2 cut(s) 640, 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.