pycom05g17830

Heterogeneous nuclear ribonucleoprotein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002787
Physical Location & Seq
Reverse (-)
20974026 .. 20975195
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17830.1

Sequence Viewer

Length: 1170 bp
ATGAACAAGCAGATATGCTACTTTATTGTATATCTTTGCCCTGTCTATACATCTGTATGTCCCTTTGTTAAAGGTTTTACTTTGATTACACAGGTTGAGGCAAAACGGGCTTTATCAAGAGAAGATCAACAGACATCCAATAGAACCAGACACTTTAATACCACCAGGAGCTCTGGAGGGGGAGGAAATTTTAAGACCAAGAAAATATTTGTTGTTGGATTGCCTTCTACACTTACAGAAGATGGATTTCGTGAATTCTTTGAAAATTATGGCACCGTTACTGATGTGGTAATAATGTATGATCAAAATACTCAACGACCTCGTGGTTTTGGTTTCATAACATTTGACACTGAATATGAAGTCGATCGAGTACTACAAAAGAACTACCATGAGTTGAATGGTAAACTTGTAGAGGTAAAGCGAGCACTTCCTAAAGATGCAAATCCAGGTGGTGGGGGCCGTGGTGGGGGATATCAAGGTTACAGTGCCTCTGGGGCCAGTACAAATGCATTTGATGGTCGAATTGATGGCCGTAGATATGTGCAGCCTCAAACTACAGCAGGTGGTTTCCCTCCATATTCTGGTTATGGCGCACCGGGTTATGGTTATGGGGTGGCAAGTACAGGGGTTGGTTATGGAGGTTATGGAAGTTATGGTCTTGGTGGTTATGGAAGTGCCAATACTGGTTTTGGTGGTCCTGCAGGATCGTATGGGAATCCAAATGCCCCTAATGCTGGCTATGTTAGTGGGGTACCTGGTGCGTTGAAAAATACTTGGAGCAACCAAACTCCTGGGTATGGCGCTACTGGCTATGGGGCTGCAGCTCCTTGGAGTACTCCCGGTGGAAGTGGTGTTCCTTCTGCTCCTAGGGGTCAATCACCAAGTGGGGCTTCTGGTTATGGAAATCAAGGTTATGGTTATGGAAATTATGGCGGGAGTTACACTTCTTATCCTGGTGGGTATGTGACCTCTGGCGGGCGGGGTGGAAGTACCCCAACAAGCAACTCAGGTAGTGCTAGCGGTGGAGAGCAACAAGGGACTCGTGGTGGTTACATGGGGAGCAGCTATGACAACACCAATGGTAATTCAGGGTACTCTAATGCATCGTGGAGATCTGACCCTTCACAGGCCACCAGTGGCTATGGTGGTTCTCAGTCCAGGCAGGCCTAA

Protein Analysis

390

Amino Acids

40.32

Weight (kDa)

9.21

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 69 - 136 2.4e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 551
Acc65I GGTACC 1 cut(s) 751
AccB1I GGYRCC 2 cut(s) 272, 751
AccB7I CCANNNNNTGG 2 cut(s) 452, 581
AciI CCGC 4 cut(s) 933, 975, 979, 1020
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 2 cut(s) 187, 254
AdeI CACNNNGTG 1 cut(s) 884
AfaI GTAC 7 cut(s) 372, 502, 622, 753, 835, 991, 1094
AfiI CCNNNNNNNGG 8 cut(s) 452, 466, 581, 602, 734, 797, 975, 1126
AgsI TTSAA 3 cut(s) 263, 397, 766
AjnI CCWGG 6 cut(s) 164, 445, 754, 790, 952, 1157
AjuI GAANNNNNNNTTGG 2 cut(s) 874, 906
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
AluBI AGCT 3 cut(s) 171, 824, 1065
AluI AGCT 3 cut(s) 171, 824, 1065
Alw21I GWGCWC 2 cut(s) 173, 427
AlwI GGATC 1 cut(s) 712
AoxI GGCC 5 cut(s) 457, 495, 529, 1128, 1164
ApeKI GCWGC 4 cut(s) 544, 818, 821, 1062
ApoI RAATTY 2 cut(s) 187, 254
Asp718I GGTACC 1 cut(s) 751
AspA2I CCTAGG 1 cut(s) 866
AspLEI GCGC 2 cut(s) 593, 803
AspS9I GGNCC 3 cut(s) 457, 495, 695
AsuC2I CCSGG 2 cut(s) 597, 840
AsuHPI GGTGA 1 cut(s) 870
AsuNHI GCTAGC 1 cut(s) 1016
AvaII GGWCC 1 cut(s) 695
AvrII CCTAGG 1 cut(s) 866
BanI GGYRCC 2 cut(s) 272, 751
BanII GRGCYC 1 cut(s) 173
BarI GAAGNNNNNNTAC 2 cut(s) 664, 696
BauI CACGAG 2 cut(s) 321, 1041
Bbv12I GWGCWC 2 cut(s) 173, 427
BbvI GCAGC 4 cut(s) 556, 805, 833, 1074
BccI CCATC 3 cut(s) 236, 509, 521
BceAI ACGGC 2 cut(s) 444, 516
BciT130I CCWGG 6 cut(s) 166, 447, 756, 792, 954, 1159
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 597, 840
BfaI CTAG 2 cut(s) 867, 1017
BfmI CTRYAG 3 cut(s) 555, 699, 819
BfoI RGCGCY 1 cut(s) 804
BfuAI ACCTGC 1 cut(s) 551
BglI GCCNNNNNGGC 1 cut(s) 494
BglII AGATCT 1 cut(s) 1112
BisI GCNGC 4 cut(s) 545, 819, 822, 1063
BlnI CCTAGG 1 cut(s) 866
BlsI GCNGC 4 cut(s) 546, 820, 823, 1064
BmcAI AGTACT 2 cut(s) 372, 835
Bme1390I CCNGG 8 cut(s) 166, 447, 597, 756, 792, 840, 954, 1159
Bme18I GGWCC 1 cut(s) 695
BmgT120I GGNCC 3 cut(s) 457, 495, 695
BmiI GGNNCC 4 cut(s) 274, 458, 496, 753
BmrFI CCNGG 8 cut(s) 166, 447, 597, 756, 792, 840, 954, 1159
BmsI GCATC 2 cut(s) 427, 1112
BmtI GCTAGC 1 cut(s) 1020
BpmI CTGGAG 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 597, 840
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 460, 791, 827, 866
Bsc4I CCNNNNNNNGG 8 cut(s) 452, 466, 581, 602, 734, 797, 975, 1126
Bse1I ACTGG 4 cut(s) 498, 688, 811, 1134
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 6 cut(s) 166, 447, 756, 792, 954, 1159
BseDI CCNNGG 4 cut(s) 460, 791, 827, 866
BseGI GGATG 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 8 cut(s) 452, 466, 581, 602, 734, 797, 975, 1126
BseMII CTCAG 2 cut(s) 1020, 1166
BseNI ACTGG 4 cut(s) 498, 688, 811, 1134
BseXI GCAGC 4 cut(s) 556, 805, 833, 1074
BsgI GTGCAG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 5 cut(s) 459, 497, 531, 1130, 1166
BshNI GGYRCC 2 cut(s) 272, 751
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 173, 427
BsiSI CCGG 2 cut(s) 596, 840
BslFI GGGAC 2 cut(s) 45, 1051
BslI CCNNNNNNNGG 8 cut(s) 452, 466, 581, 602, 734, 797, 975, 1126
BsmFI GGGAC 2 cut(s) 45, 1051
BsnI GGCC 5 cut(s) 459, 497, 531, 1130, 1166
Bsp1286I GDGCHC 2 cut(s) 173, 427
Bsp143I GATC 5 cut(s) 124, 301, 364, 704, 1112
BspACI CCGC 4 cut(s) 933, 975, 979, 1020
BspANI GGCC 5 cut(s) 459, 497, 531, 1130, 1166
BspCNI CTCAG 2 cut(s) 1019, 1165
BspLI GGNNCC 4 cut(s) 274, 458, 496, 753
BspMAI CTGCAG 2 cut(s) 703, 823
BspMI ACCTGC 1 cut(s) 551
BspOI GCTAGC 1 cut(s) 1020
BspPI GGATC 1 cut(s) 712
BspT107I GGYRCC 2 cut(s) 272, 751
BsrI ACTGG 4 cut(s) 498, 688, 811, 1134
BssECI CCNNGG 4 cut(s) 460, 791, 827, 866
BssMI GATC 5 cut(s) 124, 301, 364, 704, 1112
BssSI CACGAG 2 cut(s) 321, 1041
BssT1I CCWWGG 2 cut(s) 827, 866
Bst2BI CACGAG 2 cut(s) 321, 1041
Bst2UI CCWGG 6 cut(s) 166, 447, 756, 792, 954, 1159
Bst4CI ACNGT 2 cut(s) 277, 485
BstC8I GCNNGC 5 cut(s) 423, 736, 977, 1018, 1164
BstDEI CTNAG 2 cut(s) 1006, 1152
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 804
BstHHI GCGC 2 cut(s) 593, 803
BstKTI GATC 5 cut(s) 127, 304, 367, 707, 1115
BstMBI GATC 5 cut(s) 124, 301, 364, 704, 1112
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 4 cut(s) 107, 494, 731, 807
BstNI CCWGG 6 cut(s) 166, 447, 756, 792, 954, 1159
BstSCI CCNGG 8 cut(s) 164, 445, 595, 754, 790, 838, 952, 1157
BstSFI CTRYAG 3 cut(s) 555, 699, 819
BstV1I GCAGC 4 cut(s) 556, 805, 833, 1074
BstX2I RGATCY 1 cut(s) 1112
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 1 cut(s) 1112
BsuRI GGCC 5 cut(s) 459, 497, 531, 1130, 1166
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 3 cut(s) 348, 490, 1141
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 5 cut(s) 423, 736, 977, 1018, 1164
CfoI GCGC 2 cut(s) 593, 803
Cfr13I GGNCC 3 cut(s) 457, 495, 695
CsiI ACCWGGT 1 cut(s) 754
Csp6I GTAC 7 cut(s) 371, 501, 621, 752, 834, 990, 1093
CviAII CATG 2 cut(s) 389, 1054
CviQI GTAC 7 cut(s) 371, 501, 621, 752, 834, 990, 1093
DdeI CTNAG 2 cut(s) 1006, 1152
DpnI GATC 5 cut(s) 126, 303, 366, 706, 1114
DpnII GATC 5 cut(s) 124, 301, 364, 704, 1112
DraIII CACNNNGTG 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 529
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 827, 866
Eco147I AGGCCT 1 cut(s) 1166
Eco24I GRGCYC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 695
Eco53kI GAGCTC 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 254
EcoRII CCWGG 6 cut(s) 164, 445, 754, 790, 952, 1157
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 827, 866
EcoT22I ATGCAT 2 cut(s) 511, 1105
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 2 cut(s) 827, 866
FaeI CATG 2 cut(s) 392, 1057
FalI AAGNNNNNCTT 2 cut(s) 874, 906
FaqI GGGAC 2 cut(s) 45, 1051
FatI CATG 2 cut(s) 388, 1053
FauI CCCGC 3 cut(s) 926, 968, 972
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 545, 819, 822, 1063
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 545, 819, 822, 1063
FspBI CTAG 2 cut(s) 867, 1017
GlaI GCGC 2 cut(s) 592, 802
GluI GCNGC 4 cut(s) 545, 819, 822, 1063
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 804
HaeIII GGCC 5 cut(s) 459, 497, 531, 1130, 1166
HapII CCGG 2 cut(s) 596, 840
HhaI GCGC 2 cut(s) 593, 803
Hin1II CATG 2 cut(s) 392, 1057
Hin6I GCGC 2 cut(s) 591, 801
HinP1I GCGC 2 cut(s) 591, 801
HinfI GANTC 2 cut(s) 715, 1039
HpaII CCGG 2 cut(s) 596, 840
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 1117
Hpy188III TCNNGA 3 cut(s) 117, 174, 251
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 234, 867, 1131
HpyCH4III ACNGT 2 cut(s) 277, 485
HpyCH4V TGCA 6 cut(s) 440, 509, 544, 701, 821, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 494, 731, 807
HpyF3I CTNAG 2 cut(s) 1006, 1152
Hsp92II CATG 2 cut(s) 392, 1057
HspAI GCGC 2 cut(s) 591, 801
KpnI GGTACC 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 124, 301, 364, 704, 1112
LmnI GCTCC 5 cut(s) 168, 777, 829, 868, 1059
Lsp1109I GCAGC 4 cut(s) 556, 805, 833, 1074
LweI GCATC 2 cut(s) 427, 1112
MabI ACCWGGT 1 cut(s) 754
MaeI CTAG 2 cut(s) 867, 1017
MaeIII GTNAC 5 cut(s) 277, 479, 938, 964, 1049
MalI GATC 5 cut(s) 126, 303, 366, 706, 1114
MboI GATC 5 cut(s) 124, 301, 364, 704, 1112
MboII GAAGA 2 cut(s) 134, 251
MflI RGATCY 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 173, 427
MluCI AATT 6 cut(s) 187, 254, 265, 522, 925, 1084
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 1 cut(s) 196
Mph1103I ATGCAT 2 cut(s) 511, 1105
MseI TTAA 3 cut(s) 69, 156, 192
MslI CAYNNNNRTG 1 cut(s) 55
MspI CCGG 2 cut(s) 596, 840
MspR9I CCNGG 8 cut(s) 166, 447, 597, 756, 792, 840, 954, 1159
MvaI CCWGG 6 cut(s) 166, 447, 756, 792, 954, 1159
MwoI GCNNNNNNNGC 4 cut(s) 107, 494, 731, 807
NciI CCSGG 2 cut(s) 597, 840
NdeII GATC 5 cut(s) 124, 301, 364, 704, 1112
NheI GCTAGC 1 cut(s) 1016
NlaIII CATG 2 cut(s) 392, 1057
NlaIV GGNNCC 4 cut(s) 274, 458, 496, 753
NmuCI GTSAC 1 cut(s) 964
NsiI ATGCAT 2 cut(s) 511, 1105
PaqCI CACCTGC 1 cut(s) 551
PceI AGGCCT 1 cut(s) 1166
PfeI GAWTC 1 cut(s) 715
PflMI CCANNNNNTGG 2 cut(s) 452, 581
PkrI GCNGC 4 cut(s) 546, 820, 823, 1064
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 1 cut(s) 1033
PpsI GAGTC 1 cut(s) 1033
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 6 cut(s) 164, 445, 754, 790, 952, 1157
PspGI CCWGG 6 cut(s) 164, 445, 754, 790, 952, 1157
PspN4I GGNNCC 4 cut(s) 274, 458, 496, 753
PspPI GGNCC 3 cut(s) 457, 495, 695
PstI CTGCAG 2 cut(s) 703, 823
PsuI RGATCY 1 cut(s) 1112
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 7 cut(s) 372, 502, 622, 753, 835, 991, 1094
RsaNI GTAC 7 cut(s) 371, 501, 621, 752, 834, 990, 1093
RseI CAYNNNNRTG 1 cut(s) 55
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 3 cut(s) 69, 156, 192
SatI GCNGC 4 cut(s) 545, 819, 822, 1063
Sau3AI GATC 5 cut(s) 124, 301, 364, 704, 1112
Sau96I GGNCC 3 cut(s) 457, 495, 695
SbfI CCTGCAGG 1 cut(s) 703
ScaI AGTACT 2 cut(s) 372, 835
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 8 cut(s) 166, 447, 597, 756, 792, 840, 954, 1159
SdaI CCTGCAGG 1 cut(s) 703
SduI GDGCHC 2 cut(s) 173, 427
SexAI ACCWGGT 1 cut(s) 754
SfaNI GCATC 2 cut(s) 427, 1112
SfcI CTRYAG 3 cut(s) 555, 699, 819
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 55
Sse8387I CCTGCAGG 1 cut(s) 703
Sse9I AATT 6 cut(s) 187, 254, 265, 522, 925, 1084
SseBI AGGCCT 1 cut(s) 1166
SsiI CCGC 4 cut(s) 933, 975, 979, 1020
SspI AATATT 1 cut(s) 207
SspMI CTAG 2 cut(s) 867, 1017
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 1166
StyD4I CCNGG 8 cut(s) 164, 445, 595, 754, 790, 838, 952, 1157
StyI CCWWGG 2 cut(s) 827, 866
TaaI ACNGT 2 cut(s) 277, 485
TaqI TCGA 3 cut(s) 363, 367, 520
TasI AATT 6 cut(s) 187, 254, 265, 522, 925, 1084
TatI WGTACW 4 cut(s) 370, 500, 620, 833
TfiI GAWTC 1 cut(s) 715
Tru1I TTAA 3 cut(s) 69, 156, 192
Tru9I TTAA 3 cut(s) 69, 156, 192
TscAI CASTG 3 cut(s) 355, 490, 1141
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 4 cut(s) 544, 818, 821, 1062
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 3 cut(s) 17, 325, 372
TspRI CASTG 3 cut(s) 355, 490, 1141
Van91I CCANNNNNTGG 2 cut(s) 452, 581
VpaK11BI GGWCC 1 cut(s) 695
XapI RAATTY 2 cut(s) 187, 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmaJI CCTAGG 1 cut(s) 866
XspI CTAG 2 cut(s) 867, 1017
ZrmI AGTACT 2 cut(s) 372, 835
Zsp2I ATGCAT 2 cut(s) 511, 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.