Prupe.1G045900_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
3270742 .. 3274994
4253 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G045900.1

Sequence Viewer

Length: 1404 bp
ATGGATTCAGATCAAGGCAAGCTTTTTATTGGTGGGATTTCATGGGAAACCTCGGAGGATAAGCTGAAGGAGTACTTCAGCAACTACGGCGACGTTTTGCAAACAGTGGTTATGAGGGACAAAGTCACGGGACGCCCTAGAGGTTTTGGGTTTGTTGTTTTTGTAGATCCTGCTGTTCTTGATAGGGTTCTTCAGGATAAGCACACCATCGATGGTAGAACGGTTGAGGCTAAGAGGGCCCTATCGAGAGAGGAGCAGCAAACCACTGGCAGAGTTGGAAATGCTAACCCTACTAGAAGTGCTGGAAATGGTGGAAATATTAGGACCAAGAAGATATTTGTTGGAGGGTTGCCTCCCACGCTTAGTGAAGAAGGATTCCGTGAGTATTTTGAAACTTATGGCCATGTAACTGATGTAGTAGTAATGTATGACCAAAGTACCGGACGTCCTCGTGGATTTGGATTTATTTCATTTGATACTGAAGAAGCAGTTGATAGGGTTTTGCACAAAACATTTCATGATTTAAATGGTAAGCAAGTGGAAGTTAAGCGGGCTCTTCCCAAAGATGCCAATCCTGGTGGGGGTGGCCGTAGCATGGGGGGTGGTCAAGGTGGCGGTGGTGCAGCTGGTGGTGGTTATCAAGGATATGGCGCATCTGGTGGCAACCCAAATGCATATGATGGTAGAATGGACTCCAACAGGTACATGCAATCTCAGAGTACTGGAGGTGGTTTTCCACCTTATGGTTCTTCTGGGTATAATGCACCTAGTTATGGGTATGGTCCTACCAGTAATGGAATTGGTTATGGCGGTTATGGAAGTTACGGTGGTACTAATACTGGCTATGGAGGTCCAGCGGCTGCTGCCTATGGAAACCCTAATGCCCCAAATGCTGGCTATGCTAGTGGTCCGCCAGGTGCCCCTAGAAGTTCATGGAGTTCTCAGGCCCCCTCTGGATATGGTGCTATGGGATACGGGAATACTGCTCCTTGGGGTGTTTCAGGTGGCAGTGCAGGTGCAGGCAGTGGCGGCCCTGGTTCTGCACCTGCTGGTCAATCACCTAGTGCAGCGGCTGGGTATGGAGCGCAAGGTTATGGTTATGGTGGGTACAGTGGAAGTGATGCGTCCTATGCAAATCCGTCTGGTTATGGTGCTGTTGGAGGGCGTTCAGGGAGTGTCCCAAATAACAATGTTGGTGGCGCAGGTGGGGAGCAAGGTAGTGGTGGTGGCTATGTTGGGAGTGGCTATGGCGATTCAAATGGAAATACAGGTTATGGAAATGCTGGTTGGAGATCTGATCCATCCCAGGCTTCAGGAAACTATGGTGGTCAGGCAAATGGTGGACAAGTTGGTTATGGTGGTGGGTATGGCAGTGCTCAGGCACGACAATCCCAACAGCAGTAA

Protein Analysis

468

Amino Acids

47.05

Weight (kDa)

6.92

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 1004, 1054, 1193
AatII GACGTC 1 cut(s) 448
Acc36I ACCTGC 3 cut(s) 1004, 1054, 1193
AccB1I GGYRCC 1 cut(s) 917
AccB7I CCANNNNNTGG 2 cut(s) 743, 893
AciI CCGC 7 cut(s) 550, 615, 810, 857, 911, 1029, 1070
AclWI GGATC 2 cut(s) 161, 1292
AcoI YGGCCR 2 cut(s) 400, 586
AcuI CTGAAG 5 cut(s) 61, 86, 176, 501, 1296
AcyI GRCGYC 2 cut(s) 133, 445
AdeI CACNNNGTG 1 cut(s) 1064
AfaI GTAC 6 cut(s) 74, 439, 704, 721, 832, 1109
AfiI CCNNNNNNNGG 5 cut(s) 581, 595, 743, 773, 893
AgsI TTSAA 2 cut(s) 392, 1257
AjnI CCWGG 4 cut(s) 574, 913, 1033, 1305
AjuI GAANNNNNNNTTGG 2 cut(s) 1270, 1302
AluBI AGCT 3 cut(s) 22, 64, 626
AluI AGCT 3 cut(s) 22, 64, 626
Alw21I GWGCWC 1 cut(s) 1378
AlwI GGATC 2 cut(s) 161, 1292
AlwNI CAGNNNCTG 2 cut(s) 860, 1073
AoxI GGCC 5 cut(s) 237, 400, 586, 945, 1030
ApaI GGGCCC 1 cut(s) 241
ApeKI GCWGC 5 cut(s) 256, 623, 860, 863, 1067
AspLEI GCGC 3 cut(s) 653, 1087, 1202
AspS9I GGNCC 8 cut(s) 237, 238, 324, 782, 851, 908, 946, 1031
AsuHPI GGTGA 1 cut(s) 1050
AvaII GGWCC 4 cut(s) 324, 782, 851, 908
BaeGI GKGCMC 2 cut(s) 241, 922
BaeI ACNNNNGTAYC 2 cut(s) 421, 454
BalI TGGCCA 1 cut(s) 402
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 2 cut(s) 241, 556
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 1378
BbvI GCAGC 5 cut(s) 268, 635, 847, 850, 1079
BccI CCATC 4 cut(s) 206, 215, 674, 1309
BceAI ACGGC 2 cut(s) 103, 573
BciT130I CCWGG 4 cut(s) 576, 915, 1035, 1307
BciVI GTATCC 1 cut(s) 965
BfaI CTAG 6 cut(s) 138, 294, 768, 903, 924, 1062
BfuAI ACCTGC 3 cut(s) 1004, 1054, 1193
BfuI GTATCC 1 cut(s) 965
BglII AGATCT 1 cut(s) 1292
BisI GCNGC 8 cut(s) 257, 624, 858, 861, 864, 1030, 1068, 1071
BlsI GCNGC 8 cut(s) 258, 625, 859, 862, 865, 1031, 1069, 1072
BmcAI AGTACT 2 cut(s) 74, 721
Bme1390I CCNGG 4 cut(s) 576, 915, 1035, 1307
Bme18I GGWCC 4 cut(s) 324, 782, 851, 908
BmgT120I GGNCC 8 cut(s) 237, 238, 324, 782, 851, 908, 946, 1031
BmiI GGNNCC 3 cut(s) 239, 919, 948
BmrFI CCNGG 4 cut(s) 576, 915, 1035, 1307
BmsI GCATC 3 cut(s) 556, 662, 1111
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 1377
Bsa29I ATCGAT 1 cut(s) 210
BsaBI GATNNNNATC 2 cut(s) 9, 570
BsaHI GRCGYC 2 cut(s) 133, 445
BsaJI CCNNGG 4 cut(s) 51, 989, 1033, 1305
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 5 cut(s) 581, 595, 743, 773, 893
Bse1I ACTGG 4 cut(s) 271, 727, 789, 844
Bse8I GATNNNNATC 2 cut(s) 9, 570
BseBI CCWGG 4 cut(s) 576, 915, 1035, 1307
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 4 cut(s) 51, 989, 1033, 1305
BseGI GGATG 1 cut(s) 1301
BseJI GATNNNNATC 2 cut(s) 9, 570
BseLI CCNNNNNNNGG 5 cut(s) 581, 595, 743, 773, 893
BseMII CTCAG 3 cut(s) 728, 956, 1391
BseNI ACTGG 4 cut(s) 271, 727, 789, 844
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 2 cut(s) 241, 922
BseXI GCAGC 5 cut(s) 268, 635, 847, 850, 1079
BseYI CCCAGC 1 cut(s) 1073
BsgI GTGCAG 5 cut(s) 642, 1026, 1032, 1038, 1086
BshFI GGCC 5 cut(s) 239, 402, 588, 947, 1032
BshNI GGYRCC 1 cut(s) 917
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1378
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 3 cut(s) 131, 144, 1163
BslI CCNNNNNNNGG 5 cut(s) 581, 595, 743, 773, 893
BsmFI GGGAC 3 cut(s) 131, 144, 1163
BsnI GGCC 5 cut(s) 239, 402, 588, 947, 1032
Bsp120I GGGCCC 1 cut(s) 237
Bsp1286I GDGCHC 4 cut(s) 241, 556, 922, 1378
Bsp143I GATC 4 cut(s) 10, 166, 1292, 1297
BspACI CCGC 7 cut(s) 550, 615, 810, 857, 911, 1029, 1070
BspANI GGCC 5 cut(s) 239, 402, 588, 947, 1032
BspCNI CTCAG 3 cut(s) 727, 955, 1390
BspDI ATCGAT 1 cut(s) 210
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 239, 919, 948
BspMI ACCTGC 3 cut(s) 1004, 1054, 1193
BspPI GGATC 2 cut(s) 161, 1292
BspQI GCTCTTC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 917
BsrI ACTGG 4 cut(s) 271, 727, 789, 844
BssECI CCNNGG 4 cut(s) 51, 989, 1033, 1305
BssMI GATC 4 cut(s) 10, 166, 1292, 1297
BssNI GRCGYC 2 cut(s) 133, 445
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 989
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 4 cut(s) 576, 915, 1035, 1307
Bst4CI ACNGT 4 cut(s) 106, 223, 827, 1112
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 2 cut(s) 133, 445
BstC8I GCNNGC 4 cut(s) 20, 552, 895, 1021
BstDEI CTNAG 5 cut(s) 231, 362, 714, 942, 1377
BstF5I GGATG 1 cut(s) 1301
BstHHI GCGC 3 cut(s) 653, 1087, 1202
BstKTI GATC 4 cut(s) 13, 169, 1295, 1300
BstMBI GATC 4 cut(s) 10, 166, 1292, 1297
BstMWI GCNNNNNNNGC 8 cut(s) 87, 236, 358, 863, 890, 899, 1029, 1130
BstNI CCWGG 4 cut(s) 576, 915, 1035, 1307
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 4 cut(s) 574, 913, 1033, 1305
BstSLI GKGCMC 2 cut(s) 241, 922
BstV1I GCAGC 5 cut(s) 268, 635, 847, 850, 1079
BstX2I RGATCY 2 cut(s) 166, 1292
BstYI RGATCY 2 cut(s) 166, 1292
Bsu15I ATCGAT 1 cut(s) 210
BsuI GTATCC 1 cut(s) 965
BsuRI GGCC 5 cut(s) 239, 402, 588, 947, 1032
BsuTUI ATCGAT 1 cut(s) 210
BtsCI GGATG 1 cut(s) 1301
BtsI GCAGTG 3 cut(s) 1015, 1030, 1378
BtsIMutI CAGTG 6 cut(s) 111, 264, 1015, 1030, 1117, 1378
BveI ACCTGC 3 cut(s) 1004, 1054, 1193
Cac8I GCNNGC 4 cut(s) 20, 552, 895, 1021
CaiI CAGNNNCTG 2 cut(s) 860, 1073
CciI TCATGA 1 cut(s) 517
CfoI GCGC 3 cut(s) 653, 1087, 1202
Cfr13I GGNCC 8 cut(s) 237, 238, 324, 782, 851, 908, 946, 1031
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 2 cut(s) 141, 1113
Csp6I GTAC 6 cut(s) 73, 438, 703, 720, 831, 1108
CspCI CAANNNNNGTGG 4 cut(s) 559, 594, 1177, 1212
CviAII CATG 6 cut(s) 42, 404, 518, 595, 706, 933
CviQI GTAC 6 cut(s) 73, 438, 703, 720, 831, 1108
DdeI CTNAG 5 cut(s) 231, 362, 714, 942, 1377
DpnI GATC 4 cut(s) 12, 168, 1294, 1299
DpnII GATC 4 cut(s) 10, 166, 1292, 1297
DraI TTTAAA 1 cut(s) 525
DraIII CACNNNGTG 1 cut(s) 1064
EaeI YGGCCR 2 cut(s) 400, 586
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
EciI GGCGGA 1 cut(s) 900
Eco130I CCWWGG 1 cut(s) 989
Eco24I GRGCYC 2 cut(s) 241, 556
Eco47I GGWCC 4 cut(s) 324, 782, 851, 908
Eco57I CTGAAG 5 cut(s) 61, 86, 176, 501, 1296
EcoO109I RGGNCCY 3 cut(s) 237, 238, 946
EcoRII CCWGG 4 cut(s) 574, 913, 1033, 1305
EcoT14I CCWWGG 1 cut(s) 989
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 241, 556
ErhI CCWWGG 1 cut(s) 989
FaeI CATG 6 cut(s) 45, 407, 521, 598, 709, 936
FalI AAGNNNNNCTT 3 cut(s) 38, 59, 91
FaqI GGGAC 3 cut(s) 131, 144, 1163
FatI CATG 6 cut(s) 41, 403, 517, 594, 705, 932
FauI CCCGC 1 cut(s) 543
FauNDI CATATG 1 cut(s) 676
Fnu4HI GCNGC 8 cut(s) 257, 624, 858, 861, 864, 1030, 1068, 1071
FokI GGATG 1 cut(s) 1288
FriOI GRGCYC 2 cut(s) 241, 556
Fsp4HI GCNGC 8 cut(s) 257, 624, 858, 861, 864, 1030, 1068, 1071
FspBI CTAG 6 cut(s) 138, 294, 768, 903, 924, 1062
GlaI GCGC 3 cut(s) 652, 1086, 1201
GluI GCNGC 8 cut(s) 257, 624, 858, 861, 864, 1030, 1068, 1071
GsaI CCCAGC 1 cut(s) 1077
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 5 cut(s) 239, 402, 588, 947, 1032
HapII CCGG 1 cut(s) 441
HgaI GACGC 2 cut(s) 141, 1113
HhaI GCGC 3 cut(s) 653, 1087, 1202
Hin1I GRCGYC 2 cut(s) 133, 445
Hin1II CATG 6 cut(s) 45, 407, 521, 598, 709, 936
Hin6I GCGC 3 cut(s) 651, 1085, 1200
HinP1I GCGC 3 cut(s) 651, 1085, 1200
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 4 cut(s) 5, 375, 692, 1253
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 1050
Hpy166II GTNNAC 1 cut(s) 1343
Hpy188I TCNGA 4 cut(s) 10, 55, 717, 1297
Hpy188III TCNNGA 6 cut(s) 179, 194, 246, 518, 954, 1314
Hpy8I GTNNAC 1 cut(s) 1343
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 61, 365
HpyCH4III ACNGT 4 cut(s) 106, 223, 827, 1112
HpyCH4IV ACGT 2 cut(s) 93, 445
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 236, 358, 863, 890, 899, 1029, 1130
HpyF3I CTNAG 5 cut(s) 231, 362, 714, 942, 1377
HpySE526I ACGT 2 cut(s) 93, 445
Hsp92I GRCGYC 2 cut(s) 133, 445
Hsp92II CATG 6 cut(s) 45, 407, 521, 598, 709, 936
HspAI GCGC 3 cut(s) 651, 1085, 1200
Kzo9I GATC 4 cut(s) 10, 166, 1292, 1297
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 4 cut(s) 253, 991, 1082, 1210
Lsp1109I GCAGC 5 cut(s) 268, 635, 847, 850, 1079
LweI GCATC 3 cut(s) 556, 662, 1111
MaeI CTAG 6 cut(s) 138, 294, 768, 903, 924, 1062
MaeII ACGT 2 cut(s) 93, 445
MaeIII GTNAC 3 cut(s) 124, 406, 821
MalI GATC 4 cut(s) 12, 168, 1294, 1299
MboI GATC 4 cut(s) 10, 166, 1292, 1297
MboII GAAGA 6 cut(s) 182, 343, 380, 494, 548, 741
MflI RGATCY 2 cut(s) 166, 1292
MhlI GDGCHC 4 cut(s) 241, 556, 922, 1378
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 1 cut(s) 798
MluNI TGGCCA 1 cut(s) 402
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 5 cut(s) 256, 322, 720, 1138, 1268
Mox20I TGGCCA 1 cut(s) 402
Mph1103I ATGCAT 1 cut(s) 676
MscI TGGCCA 1 cut(s) 402
MseI TTAA 2 cut(s) 524, 546
Msp20I TGGCCA 1 cut(s) 402
MspA1I CMGCKG 3 cut(s) 626, 857, 1070
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 4 cut(s) 576, 915, 1035, 1307
MvaI CCWGG 4 cut(s) 576, 915, 1035, 1307
MwoI GCNNNNNNNGC 8 cut(s) 87, 236, 358, 863, 890, 899, 1029, 1130
NdeI CATATG 1 cut(s) 676
NdeII GATC 4 cut(s) 10, 166, 1292, 1297
NlaIII CATG 6 cut(s) 45, 407, 521, 598, 709, 936
NlaIV GGNNCC 3 cut(s) 239, 919, 948
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 517
PaqCI CACCTGC 3 cut(s) 1004, 1054, 1193
PciSI GCTCTTC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 5, 375, 1253
PflFI GACNNNGTC 1 cut(s) 122
PflMI CCANNNNNTGG 2 cut(s) 743, 893
PkrI GCNGC 8 cut(s) 258, 625, 859, 862, 865, 1031, 1069, 1072
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
Psp6I CCWGG 4 cut(s) 574, 913, 1033, 1305
PspFI CCCAGC 1 cut(s) 1073
PspGI CCWGG 4 cut(s) 574, 913, 1033, 1305
PspN4I GGNNCC 3 cut(s) 239, 919, 948
PspOMI GGGCCC 1 cut(s) 237
PspPI GGNCC 8 cut(s) 237, 238, 324, 782, 851, 908, 946, 1031
PstNI CAGNNNCTG 2 cut(s) 860, 1073
PsuI RGATCY 2 cut(s) 166, 1292
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 6 cut(s) 74, 439, 704, 721, 832, 1109
RsaNI GTAC 6 cut(s) 73, 438, 703, 720, 831, 1108
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 2 cut(s) 524, 546
SatI GCNGC 8 cut(s) 257, 624, 858, 861, 864, 1030, 1068, 1071
Sau3AI GATC 4 cut(s) 10, 166, 1292, 1297
Sau96I GGNCC 8 cut(s) 237, 238, 324, 782, 851, 908, 946, 1031
ScaI AGTACT 2 cut(s) 74, 721
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 4 cut(s) 576, 915, 1035, 1307
SduI GDGCHC 4 cut(s) 241, 556, 922, 1378
SfaNI GCATC 3 cut(s) 556, 662, 1111
SinI GGWCC 4 cut(s) 324, 782, 851, 908
SmiI ATTTAAAT 1 cut(s) 525
Sse9I AATT 1 cut(s) 798
SsiI CCGC 7 cut(s) 550, 615, 810, 857, 911, 1029, 1070
SspI AATATT 1 cut(s) 319
SspMI CTAG 6 cut(s) 138, 294, 768, 903, 924, 1062
StyD4I CCNGG 4 cut(s) 574, 913, 1033, 1305
StyI CCWWGG 1 cut(s) 989
SwaI ATTTAAAT 1 cut(s) 525
TaaI ACNGT 4 cut(s) 106, 223, 827, 1112
TaiI ACGT 2 cut(s) 96, 448
TaqI TCGA 2 cut(s) 210, 245
TasI AATT 1 cut(s) 798
TatI WGTACW 2 cut(s) 72, 719
TauI GCSGC 3 cut(s) 860, 1032, 1073
TfiI GAWTC 3 cut(s) 5, 375, 1253
Tru1I TTAA 2 cut(s) 524, 546
Tru9I TTAA 2 cut(s) 524, 546
TscAI CASTG 6 cut(s) 111, 271, 1015, 1030, 1117, 1378
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 5 cut(s) 256, 623, 860, 863, 1067
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 30, 459, 506, 921
TspGWI ACGGA 2 cut(s) 368, 1128
TspRI CASTG 6 cut(s) 111, 271, 1015, 1030, 1117, 1378
Tth111I GACNNNGTC 1 cut(s) 122
Van91I CCANNNNNTGG 2 cut(s) 743, 893
VpaK11BI GGWCC 4 cut(s) 324, 782, 851, 908
XceI RCATGY 1 cut(s) 709
XspI CTAG 6 cut(s) 138, 294, 768, 903, 924, 1062
ZraI GACGTC 1 cut(s) 446
ZrmI AGTACT 2 cut(s) 74, 721
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.