FvH4_2g20810

Heterogeneous nuclear ribonucleoprotein 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
17386183 .. 17388923
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20810.t1

Sequence Viewer

Length: 1287 bp
ATGGACTCCGACGAGAGCAAGCTCTTCATAGGCGGACTGGCCTGGGACACCACCGAGGAGAAGCTCACCGACTACTTCAACCAGTACGGTGACGTCAGCCAGGCCGTCATCATGCGCGACAAGATCACCGGCCGCCCCCGCGGCTTCGGCTTCGTCGTCTTCTCTGATCCCGCCGTCCTCGATAGGGTCCTCAACGACAAGCACACCATCGACGGCCGTGTGGTGGAAGCAAAAAAGGCTTTGTCAAGAGAAGAGCAGCAAACATCCAATCGAACTGGAAATTTTAATGCCACTAGAAGCTCCGGAGGTGGAGGAAATTTTAAGACTAAGAAAATATTTGTTGGAGGATTGCCTTCCACACTGACAGAAGATGGATTTCGTCAATTCTTTGAAGAGTACGGCAGTGTTACTGATGTAGTAATAATGTATGACCAGAACACTCAACGGCCTCGAGGATTTGGTTTCATAACTTTTGACACTGAAGATGCAGTTGATAGAGTACTACAAAAGAACTTCCATGAGTTGAATGGTAAACTTGTAGAAGTAAAACGAGCACTTCCCAAAGATGCAAATCCTGGCGGTGGAGGTCGTGGTGGGGGCTATCAAGGTTATAGTGCCTCGGGAGCCAGTTCAAATGCATTTGATGGCCGAATGGATGGCAATAGATATATGCAGCCTCAGTCTACGGCAGGTGGTTTCCCTCCGTATTCTGGTTATGGTGCTGCAGGTTATGGTTACGGTGGAAATACTGGTGTTGGTTATGGAGGTTATGGAAGTTATGGTGTTGGTGGTTATGGAAGTGCCACTTCTGGCTTTGGTGGTCCTGCAGGATCATATGGAAATCCAAATTCCCCTGCTGGTTATGTTAGTGGGGCACCCGGTGCATTGAAAAATGCTTGGAGCAGCCAAAGCCCCTCTGGCTATGGTGCTTCAGGCGGCTATGCGGCTGCAGCTTCCTGGGCTGCTCCAGGTGGAAGTGCTCCTTCTGCTCCCAGAGGTCAATCGCCTAGTGCGGTTTCTGGTTATGGAAATCAAGGTTATGGGTATGGCAATTATGGAGGAAGTTACGGTTCTTATCCTGGTGTGTATGGGACTTCTGGGGGGCGTGGTGGAAGCACCCCAACTGGTAACAGTGGTGGTGGAGAGCAACAAGGAACACGAGGTGGCTACATGGGAAGTGCATATGGTGACACAAATGGAAATGCAGGATACTCTAATGCAGCATGGAGAGCAGACCCTTCACAAGCCAGTGGTGGTTATGGTAGTTCTCAGTCCAGGCAGACATAA

Protein Analysis

429

Amino Acids

43.98

Weight (kDa)

7.69

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 6 - 69 5e-06 RNA recognition motif
RRM_1 PF00076 8 - 75 2.3e-16 RNA recognition motif
RRM_7 PF16367 110 - 177 1e-06 RNA recognition motif
RRM_1 PF00076 112 - 179 4.4e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 680
AatII GACGTC 1 cut(s) 96
AbsI CCTCGAGG 1 cut(s) 450
Acc36I ACCTGC 2 cut(s) 680, 716
AccB1I GGYRCC 1 cut(s) 874
AccI GTMKAC 1 cut(s) 683
AccII CGCG 2 cut(s) 117, 141
AccIII TCCGGA 1 cut(s) 302
AciI CCGC 9 cut(s) 33, 133, 139, 141, 171, 579, 936, 944, 1013
AclWI GGATC 2 cut(s) 161, 838
AcoI YGGCCR 3 cut(s) 130, 214, 646
AcsI RAATTY 3 cut(s) 280, 316, 847
AcuI CTGAAG 2 cut(s) 501, 915
AcyI GRCGYC 1 cut(s) 93
AdeI CACNNNGTG 2 cut(s) 881, 1163
AfaI GTAC 3 cut(s) 86, 398, 501
AfiI CCNNNNNNNGG 4 cut(s) 184, 223, 581, 710
AgsI TTSAA 5 cut(s) 79, 392, 526, 633, 889
AjnI CCWGG 7 cut(s) 41, 99, 574, 956, 967, 1078, 1274
AluBI AGCT 4 cut(s) 22, 64, 300, 953
AluI AGCT 4 cut(s) 22, 64, 300, 953
Alw21I GWGCWC 2 cut(s) 556, 982
AlwI GGATC 2 cut(s) 161, 838
Ama87I CYCGRG 2 cut(s) 450, 619
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 6 cut(s) 39, 102, 130, 214, 446, 646
ApeKI GCWGC 8 cut(s) 256, 673, 722, 903, 947, 950, 962, 1220
ApoI RAATTY 3 cut(s) 280, 316, 847
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 187, 821
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 4 cut(s) 58, 101, 118, 1199
AvaI CYCGRG 2 cut(s) 450, 619
AvaII GGWCC 2 cut(s) 187, 821
BaeGI GKGCMC 1 cut(s) 877
BanI GGYRCC 1 cut(s) 874
BauI CACGAG 1 cut(s) 1158
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 556, 982
BbvI GCAGC 8 cut(s) 268, 685, 709, 915, 934, 949, 962, 1232
BccI CCATC 4 cut(s) 215, 365, 638, 650
BceAI ACGGC 7 cut(s) 89, 158, 201, 229, 415, 461, 702
BciT130I CCWGG 7 cut(s) 43, 101, 576, 958, 969, 1080, 1276
BciVI GTATCC 1 cut(s) 1202
BcnI CCSGG 1 cut(s) 879
BfaI CTAG 2 cut(s) 294, 1008
BfmI CTRYAG 3 cut(s) 723, 825, 948
BfuAI ACCTGC 2 cut(s) 680, 716
BfuI GTATCC 1 cut(s) 1202
BglI GCCNNNNNGGC 2 cut(s) 141, 918
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 8 cut(s) 43, 101, 576, 879, 958, 969, 1080, 1276
Bme18I GGWCC 2 cut(s) 187, 821
BmeT110I CYCGRG 2 cut(s) 450, 619
BmgT120I GGNCC 2 cut(s) 187, 821
BmiI GGNNCC 3 cut(s) 188, 625, 876
BmrFI CCNGG 8 cut(s) 43, 101, 576, 879, 958, 969, 1080, 1276
BmsI GCATC 2 cut(s) 475, 556
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 951
BpuMI CCSGG 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 570
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 5 cut(s) 42, 54, 139, 618, 957
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 223, 581, 710
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 7 cut(s) 42, 82, 280, 627, 754, 1129, 1248
Bse8I GATNNNNATC 1 cut(s) 570
BseAI TCCGGA 1 cut(s) 302
BseBI CCWGG 7 cut(s) 43, 101, 576, 958, 969, 1080, 1276
BseDI CCNNGG 5 cut(s) 42, 54, 139, 618, 957
BseGI GGATG 2 cut(s) 263, 661
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 4 cut(s) 184, 223, 581, 710
BseMII CTCAG 2 cut(s) 692, 1283
BseNI ACTGG 7 cut(s) 42, 82, 280, 627, 754, 1129, 1248
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 877
BseX3I CGGCCG 2 cut(s) 130, 214
BseXI GCAGC 8 cut(s) 268, 685, 709, 915, 934, 949, 962, 1232
Bsh1236I CGCG 2 cut(s) 117, 141
Bsh1285I CGRYCG 2 cut(s) 133, 217
BshFI GGCC 6 cut(s) 41, 104, 132, 216, 448, 648
BshNI GGYRCC 1 cut(s) 874
BsiEI CGRYCG 2 cut(s) 133, 217
BsiHKAI GWGCWC 2 cut(s) 556, 982
BsiHKCI CYCGRG 2 cut(s) 450, 619
BsiSI CCGG 3 cut(s) 129, 303, 879
BslFI GGGAC 2 cut(s) 59, 1105
BslI CCNNNNNNNGG 4 cut(s) 184, 223, 581, 710
BsmFI GGGAC 2 cut(s) 59, 1105
BsnI GGCC 6 cut(s) 41, 104, 132, 216, 448, 648
BsoBI CYCGRG 2 cut(s) 450, 619
Bsp1286I GDGCHC 3 cut(s) 556, 877, 982
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 123, 166, 830
BspACI CCGC 9 cut(s) 33, 133, 139, 141, 171, 579, 936, 944, 1013
BspANI GGCC 6 cut(s) 41, 104, 132, 216, 448, 648
BspCNI CTCAG 2 cut(s) 691, 1282
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 2 cut(s) 117, 141
BspLI GGNNCC 3 cut(s) 188, 625, 876
BspMAI CTGCAG 3 cut(s) 727, 829, 952
BspMI ACCTGC 2 cut(s) 680, 716
BspPI GGATC 2 cut(s) 161, 838
BspQI GCTCTTC 2 cut(s) 29, 246
BspT107I GGYRCC 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 7 cut(s) 42, 82, 280, 627, 754, 1129, 1248
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 5 cut(s) 42, 54, 139, 618, 957
BssMI GATC 3 cut(s) 123, 166, 830
BssNI GRCGYC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 1158
Bst2BI CACGAG 1 cut(s) 1158
Bst2UI CCWGG 7 cut(s) 43, 101, 576, 958, 969, 1080, 1276
Bst4CI ACNGT 4 cut(s) 89, 740, 1070, 1133
Bst6I CTCTTC 3 cut(s) 29, 246, 387
BstACI GRCGYC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 327, 678, 1269
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 2 cut(s) 263, 661
BstFNI CGCG 2 cut(s) 117, 141
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 126, 169, 833
BstMBI GATC 3 cut(s) 123, 166, 830
BstMCI CGRYCG 2 cut(s) 133, 217
BstNI CCWGG 7 cut(s) 43, 101, 576, 958, 969, 1080, 1276
BstSCI CCNGG 8 cut(s) 41, 99, 574, 877, 956, 967, 1078, 1274
BstSFI CTRYAG 3 cut(s) 723, 825, 948
BstSLI GKGCMC 1 cut(s) 877
BstUI CGCG 2 cut(s) 117, 141
BstV1I GCAGC 8 cut(s) 268, 685, 709, 915, 934, 949, 962, 1232
BstV2I GAAGAC 1 cut(s) 151
BstZI CGGCCG 2 cut(s) 130, 214
BsuI GTATCC 1 cut(s) 1202
BsuRI GGCC 6 cut(s) 41, 104, 132, 216, 448, 648
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 263, 661
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 5 cut(s) 359, 409, 477, 1138, 1255
BveI ACCTGC 2 cut(s) 680, 716
Cac8I GCNNGC 1 cut(s) 20
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 187, 821
Cfr42I CCGCGG 1 cut(s) 142
Csp6I GTAC 3 cut(s) 85, 397, 500
CviAII CATG 4 cut(s) 112, 518, 1171, 1224
CviQI GTAC 3 cut(s) 85, 397, 500
DdeI CTNAG 3 cut(s) 327, 678, 1269
DpnI GATC 3 cut(s) 125, 168, 832
DpnII GATC 3 cut(s) 123, 166, 830
DraIII CACNNNGTG 2 cut(s) 881, 1163
EaeI YGGCCR 3 cut(s) 130, 214, 646
EagI CGGCCG 2 cut(s) 130, 214
Eam1104I CTCTTC 3 cut(s) 29, 246, 387
EarI CTCTTC 3 cut(s) 29, 246, 387
EciI GGCGGA 1 cut(s) 48
EclXI CGGCCG 2 cut(s) 130, 214
Eco47I GGWCC 2 cut(s) 187, 821
Eco52I CGGCCG 2 cut(s) 130, 214
Eco57I CTGAAG 2 cut(s) 501, 915
Eco88I CYCGRG 2 cut(s) 450, 619
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 7 cut(s) 41, 99, 574, 956, 967, 1078, 1274
EcoT22I ATGCAT 1 cut(s) 640
FaeI CATG 4 cut(s) 115, 521, 1174, 1227
FalI AAGNNNNNCTT 4 cut(s) 790, 822, 967, 999
FaqI GGGAC 2 cut(s) 59, 1105
FatI CATG 4 cut(s) 111, 517, 1170, 1223
FauI CCCGC 2 cut(s) 146, 178
FauNDI CATATG 2 cut(s) 835, 1183
FblI GTMKAC 1 cut(s) 683
FokI GGATG 2 cut(s) 250, 668
FspBI CTAG 2 cut(s) 294, 1008
GlaI GCGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 6 cut(s) 41, 104, 132, 216, 448, 648
HapII CCGG 3 cut(s) 129, 303, 879
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 4 cut(s) 115, 521, 1174, 1227
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 5
HpaII CCGG 3 cut(s) 129, 303, 879
HphI GGTGA 4 cut(s) 58, 101, 118, 1199
Hpy166II GTNNAC 2 cut(s) 533, 684
Hpy188I TCNGA 2 cut(s) 10, 166
Hpy188III TCNNGA 3 cut(s) 246, 303, 621
Hpy8I GTNNAC 2 cut(s) 533, 684
Hpy99I CGWCG 3 cut(s) 14, 158, 215
HpyAV CCTTC 3 cut(s) 363, 993, 1248
HpyCH4III ACNGT 4 cut(s) 89, 740, 1070, 1133
HpyCH4IV ACGT 1 cut(s) 93
HpyF3I CTNAG 3 cut(s) 327, 678, 1269
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 4 cut(s) 115, 521, 1174, 1227
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 302
KspI CCGCGG 1 cut(s) 142
Kzo9I GATC 3 cut(s) 123, 166, 830
LguI GCTCTTC 2 cut(s) 29, 246
LmnI GCTCC 6 cut(s) 305, 623, 900, 970, 985, 994
Lsp1109I GCAGC 8 cut(s) 268, 685, 709, 915, 934, 949, 962, 1232
LweI GCATC 2 cut(s) 475, 556
MaeI CTAG 2 cut(s) 294, 1008
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 6 cut(s) 89, 406, 734, 1064, 1127, 1187
MalI GATC 3 cut(s) 125, 168, 832
MboI GATC 3 cut(s) 123, 166, 830
MboII GAAGA 6 cut(s) 16, 151, 263, 380, 404, 494
MhlI GDGCHC 3 cut(s) 556, 877, 982
MluCI AATT 5 cut(s) 280, 316, 383, 847, 1051
MmeI TCCRAC 2 cut(s) 33, 322
Mph1103I ATGCAT 1 cut(s) 640
MroI TCCGGA 1 cut(s) 302
MseI TTAA 2 cut(s) 285, 321
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 3 cut(s) 129, 303, 879
MspR9I CCNGG 8 cut(s) 43, 101, 576, 879, 958, 969, 1080, 1276
MvaI CCWGG 7 cut(s) 43, 101, 576, 958, 969, 1080, 1276
MvnI CGCG 2 cut(s) 117, 141
NciI CCSGG 1 cut(s) 879
NdeI CATATG 2 cut(s) 835, 1183
NdeII GATC 3 cut(s) 123, 166, 830
NlaIII CATG 4 cut(s) 115, 521, 1174, 1227
NlaIV GGNNCC 3 cut(s) 188, 625, 876
NmuCI GTSAC 2 cut(s) 89, 1187
NsiI ATGCAT 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 450
PaqCI CACCTGC 1 cut(s) 680
PciSI GCTCTTC 2 cut(s) 29, 246
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 7 cut(s) 41, 99, 574, 956, 967, 1078, 1274
PspGI CCWGG 7 cut(s) 41, 99, 574, 956, 967, 1078, 1274
PspN4I GGNNCC 3 cut(s) 188, 625, 876
PspPI GGNCC 2 cut(s) 187, 821
PspPPI RGGWCCY 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 450
PstI CTGCAG 3 cut(s) 727, 829, 952
RsaI GTAC 3 cut(s) 86, 398, 501
RsaNI GTAC 3 cut(s) 85, 397, 500
SacII CCGCGG 1 cut(s) 142
SapI GCTCTTC 2 cut(s) 29, 246
SaqAI TTAA 2 cut(s) 285, 321
Sau3AI GATC 3 cut(s) 123, 166, 830
Sau96I GGNCC 2 cut(s) 187, 821
SbfI CCTGCAGG 1 cut(s) 829
ScaI AGTACT 1 cut(s) 501
ScrFI CCNGG 8 cut(s) 43, 101, 576, 879, 958, 969, 1080, 1276
SdaI CCTGCAGG 1 cut(s) 829
SduI GDGCHC 3 cut(s) 556, 877, 982
SfaNI GCATC 2 cut(s) 475, 556
SfcI CTRYAG 3 cut(s) 723, 825, 948
Sfr274I CTCGAG 1 cut(s) 450
Sfr303I CCGCGG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 142
SinI GGWCC 2 cut(s) 187, 821
SlaI CTCGAG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 450
SmoI CTYRAG 1 cut(s) 450
Sse8387I CCTGCAGG 1 cut(s) 829
Sse9I AATT 5 cut(s) 280, 316, 383, 847, 1051
SsiI CCGC 9 cut(s) 33, 133, 139, 141, 171, 579, 936, 944, 1013
SspI AATATT 1 cut(s) 336
SspMI CTAG 2 cut(s) 294, 1008
StyD4I CCNGG 8 cut(s) 41, 99, 574, 877, 956, 967, 1078, 1274
TaaI ACNGT 4 cut(s) 89, 740, 1070, 1133
TaiI ACGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 180, 210, 271, 451
TasI AATT 5 cut(s) 280, 316, 383, 847, 1051
TatI WGTACW 1 cut(s) 499
TauI GCSGC 4 cut(s) 135, 144, 939, 947
Tru1I TTAA 2 cut(s) 285, 321
Tru9I TTAA 2 cut(s) 285, 321
TscAI CASTG 5 cut(s) 366, 409, 484, 1138, 1255
TseFI GTSAC 2 cut(s) 89, 1187
TseI GCWGC 8 cut(s) 256, 673, 722, 903, 947, 950, 962, 1220
Tsp45I GTSAC 2 cut(s) 89, 1187
TspDTI ATGAA 2 cut(s) 16, 454
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 5 cut(s) 366, 409, 484, 1138, 1255
VpaK11BI GGWCC 2 cut(s) 187, 821
XapI RAATTY 3 cut(s) 280, 316, 847
XcmI CCANNNNNNNNNTGG 2 cut(s) 524, 914
XhoI CTCGAG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 683
XspI CTAG 2 cut(s) 294, 1008
ZraI GACGTC 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.