AT4G14615

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010124
Physical Location & Seq
Forward (+)
8383727 .. 8385249
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14615.1

Sequence Viewer

Length: 231 bp
ATGTCATCTGTTGGAACATCGAAAGGGGTTCTGGAGATCGTCAAGTTCGGTGTCTATGTCGCTGTTCCGATCGTCCTTATGTACACATTCGCCAACAACAGCACCAATATCAAGAAATTCATGGGCAATCGTTCATATGTTGTTTATCCTGAAGAGGCACCTAGACCTCCTTCACCCGATGAGCTAAGAGAGATGGCACGAGAGCTTGCCCGTAAGAAGAACATCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

76

Amino Acids

8.59

Weight (kDa)

9.82

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet100 PF09803 10 - 73 9.7e-09 Pet100
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 83
AluBI AGCT 2 cut(s) 184, 205
AluI AGCT 2 cut(s) 184, 205
ApoI RAATTY 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 157
BauI CACGAG 1 cut(s) 198
BccI CCATC 1 cut(s) 187
BfaI CTAG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 225
BseGI GGATG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 72
BsiSI CCGG 1 cut(s) 226
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 2 cut(s) 36, 69
BspLI GGNNCC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 81
BssMI GATC 2 cut(s) 36, 69
BssSI CACGAG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 39, 72
BstMBI GATC 2 cut(s) 36, 69
BstMCI CGRYCG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 121
CviJI RGCY 2 cut(s) 184, 205
CviKI_1 RGCY 2 cut(s) 184, 205
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 38, 71
DpnII GATC 2 cut(s) 36, 69
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 171
FaeI CATG 1 cut(s) 124
FaiI YATR 5 cut(s) 57, 80, 122, 136, 138
FatI CATG 1 cut(s) 120
FauNDI CATATG 1 cut(s) 136
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 53
HapII CCGG 1 cut(s) 226
Hin1II CATG 1 cut(s) 124
HpaII CCGG 1 cut(s) 226
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 32, 112, 149
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 2 cut(s) 36, 69
LpnPI CCDG 2 cut(s) 17, 162
MaeI CTAG 1 cut(s) 162
MalI GATC 2 cut(s) 38, 71
MboI GATC 2 cut(s) 36, 69
MboII GAAGA 2 cut(s) 164, 229
MluCI AATT 1 cut(s) 116
MnlI CCTC 2 cut(s) 148, 177
MspI CCGG 1 cut(s) 226
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 36, 69
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 159
Ple19I CGATCG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 159
PvuI CGATCG 1 cut(s) 72
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 36, 69
SetI ASST 4 cut(s) 163, 169, 186, 207
Sse9I AATT 1 cut(s) 116
SspMI CTAG 1 cut(s) 162
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 116
TatI WGTACW 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 109, 123
XapI RAATTY 1 cut(s) 116
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.