Rw0G003680

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00136
OG0010124
Physical Location & Seq
Reverse (-)
28635 .. 29134
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003680.1

Sequence Viewer

Length: 228 bp
ATGTCGAATTCGGAACTTCAAAGGGAGTACTGGAGATTGCAAGTCGGGCTCTACGTCTCCATCCCCATTGTTCTTATGTACACTTTTGCTAACAACAGTAAGAATATCCAGAGATTCATGGGAAATCGTTCTTATGTAGTATATCCACCAGAGGCGCCGAGGCCTCCGTCTCCAGAGGAAATGAGGGAGATGGCACGGGAACTAGCTAGGAAGAACAATTCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

75

Amino Acids

8.91

Weight (kDa)

9.86

Isoelectric Point (pI)

66.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet100 PF09803 15 - 73 4.3e-06 Pet100
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 223
AcsI RAATTY 1 cut(s) 7
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 2 cut(s) 29, 80
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 2 cut(s) 61, 174
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 51
BccI CCATC 2 cut(s) 68, 184
BcoDI GTCTC 2 cut(s) 61, 174
BfaI CTAG 2 cut(s) 203, 207
BfoI RGCGCY 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 156
BpmI CTGGAG 2 cut(s) 52, 156
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 61, 174
BsmBI CGTCTC 2 cut(s) 61, 174
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 78
BspANI GGCC 1 cut(s) 163
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 78
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 158
BssNI GRCGYC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 78
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 61, 174
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstUI CGCG 1 cut(s) 223
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 60
CfoI GCGC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 28, 79
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 49, 163, 206
CviKI_1 RGCY 3 cut(s) 49, 163, 206
CviQI GTAC 2 cut(s) 28, 79
DinI GGCGCC 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 61, 174
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 77, 119, 135, 142
FatI CATG 1 cut(s) 117
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 51
FspBI CTAG 2 cut(s) 203, 207
GlaI GCGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 52, 156
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 163
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 109, 173
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 155
KasI GGCGCC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 16, 122, 162, 186
MaeI CTAG 2 cut(s) 203, 207
MaeII ACGT 1 cut(s) 54
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 7, 217
Mly113I GGCGCC 1 cut(s) 155
MnlI CCTC 5 cut(s) 145, 153, 169, 174, 177
MroXI GAANNNNTTC 1 cut(s) 127
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 155
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 183
PceI AGGCCT 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 114
PluTI GGCGCC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 156
RsaI GTAC 2 cut(s) 29, 80
RsaNI GTAC 2 cut(s) 28, 79
ScaI AGTACT 1 cut(s) 29
SduI GDGCHC 1 cut(s) 51
SetI ASST 2 cut(s) 57, 208
SfoI GGCGCC 1 cut(s) 156
Sse9I AATT 2 cut(s) 7, 217
SseBI AGGCCT 1 cut(s) 163
SspDI GGCGCC 1 cut(s) 154
SspMI CTAG 2 cut(s) 203, 207
StuI AGGCCT 1 cut(s) 163
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 7, 217
TatI WGTACW 2 cut(s) 27, 78
TfiI GAWTC 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 156
XapI RAATTY 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 2 cut(s) 203, 207
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.