Rmu_sc0001395.1_g000011

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001395.1
OG0010124
Physical Location & Seq
Forward (+)
67216 .. 68106
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001395.1_g000011.1.cds

Sequence Viewer

Length: 240 bp
ctggtgaaaatgtcgaatatcggaacttcaaagggagtactggagattgccaagttcgggctctacgtttccatccccattgttcttatgtacacttttgctaacaacagtaagaacatccagagattcatgggaaatcgttcttatgtagtatatccaccagaggcgccgaggcctccgtctccagaggaaatgagggagatggcacgggaactagctaggaagaacaattcgcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

79

Amino Acids

9.01

Weight (kDa)

10.08

Isoelectric Point (pI)

66.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 2 cut(s) 39, 92
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 186
AoxI GGCC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 63
BccI CCATC 2 cut(s) 80, 196
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 215, 219
BfoI RGCGCY 1 cut(s) 170
BmcAI AGTACT 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 168
BpmI CTGGAG 2 cut(s) 62, 168
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 72, 117
BseLI CCNNNNNNNGG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 63
Bsp1407I TGTACA 1 cut(s) 90
BspANI GGCC 1 cut(s) 175
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 170
BssNI GRCGYC 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 90
BstF5I GGATG 2 cut(s) 72, 117
BstFNI CGCG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 186
BstUI CGCG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 72, 117
CfoI GCGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 38, 91
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 61, 175, 218
CviKI_1 RGCY 3 cut(s) 61, 175, 218
CviQI GTAC 2 cut(s) 38, 91
DinI GGCGCC 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 89, 131, 147, 154
FatI CATG 1 cut(s) 129
FokI GGATG 2 cut(s) 59, 104
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 2 cut(s) 215, 219
GlaI GCGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 62, 168
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 1 cut(s) 175
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 126
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 121, 185
Hpy8I GTNNAC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 167
KasI GGCGCC 1 cut(s) 166
LpnPI CCDG 4 cut(s) 26, 134, 174, 198
MaeI CTAG 2 cut(s) 215, 219
MaeII ACGT 1 cut(s) 66
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 229
Mly113I GGCGCC 1 cut(s) 167
MnlI CCTC 5 cut(s) 157, 165, 181, 186, 189
MroXI GAANNNNTTC 1 cut(s) 139
MvnI CGCG 1 cut(s) 235
NarI GGCGCC 1 cut(s) 167
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 195
PceI AGGCCT 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 126
PluTI GGCGCC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 168
RsaI GTAC 2 cut(s) 39, 92
RsaNI GTAC 2 cut(s) 38, 91
ScaI AGTACT 1 cut(s) 39
SduI GDGCHC 1 cut(s) 63
SetI ASST 2 cut(s) 69, 220
SfoI GGCGCC 1 cut(s) 168
Sse9I AATT 1 cut(s) 229
SseBI AGGCCT 1 cut(s) 175
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 2 cut(s) 215, 219
StuI AGGCCT 1 cut(s) 175
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 229
TatI WGTACW 2 cut(s) 37, 90
TfiI GAWTC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 118
TspGWI ACGGA 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 215, 219
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.