MD16G1204700.v1.1

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0010124
Physical Location & Seq
Reverse (-)
18865159 .. 18866524
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1204700.v1.1.491

Sequence Viewer

Length: 231 bp
ATGTCGAATGTGGGAACATCAAAGGGAATTCTGGAGATCGGAAAATTTGGGCTGTACGTCGCCATCCCCATGGTGCTTATGTACACCTTCGCCAACAACTCTAAGAATCTCCAGAGATTCATGGGCAATCATTCGTATGTAGTGTATCCACCGGAGGCACCGAGACCTCCATCACCGGAGGAAATGAGGGAGATGGCACGAGAGCTAGCTCGGAAGAAGGCTGCCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

77

Amino Acids

8.59

Weight (kDa)

9.89

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet100 PF09803 10 - 75 8.2e-10 Pet100
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AcsI RAATTY 2 cut(s) 27, 44
AfaI GTAC 2 cut(s) 56, 83
AluBI AGCT 2 cut(s) 205, 209
AluI AGCT 2 cut(s) 205, 209
Alw26I GTCTC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 27, 44
AsuHPI GGTGA 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 157
BauI CACGAG 1 cut(s) 198
BbvI GCAGC 1 cut(s) 208
BccI CCATC 3 cut(s) 71, 178, 187
BciVI GTATCC 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 159
BmtI GCTAGC 1 cut(s) 209
BpmI CTGGAG 2 cut(s) 53, 95
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 2 cut(s) 151, 175
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 152, 176
BsmAI GTCTC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 159
BspOI GCTAGC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuI GTATCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 55, 82
CviAII CATG 2 cut(s) 70, 121
CviJI RGCY 4 cut(s) 52, 205, 209, 221
CviKI_1 RGCY 4 cut(s) 52, 205, 209, 221
CviQI GTAC 2 cut(s) 55, 82
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 73, 124
FaiI YATR 4 cut(s) 71, 80, 122, 138
FatI CATG 2 cut(s) 69, 120
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 53, 95
HapII CCGG 2 cut(s) 152, 176
Hin1II CATG 2 cut(s) 73, 124
HinfI GANTC 2 cut(s) 106, 117
HpaII CCGG 2 cut(s) 152, 176
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 41, 213
Hpy188III TCNNGA 2 cut(s) 32, 112
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 97, 211
HpyCH4IV ACGT 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 73, 124
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 4 cut(s) 17, 125, 165, 189
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 226
MluCI AATT 2 cut(s) 27, 44
MnlI CCTC 4 cut(s) 148, 172, 177, 180
MslI CAYNNNNRTG 2 cut(s) 68, 135
MspI CCGG 2 cut(s) 152, 176
NcoI CCATGG 1 cut(s) 69
NdeII GATC 1 cut(s) 36
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 2 cut(s) 73, 124
NlaIV GGNNCC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 106, 117
PkrI GCNGC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 159
RsaI GTAC 2 cut(s) 56, 83
RsaNI GTAC 2 cut(s) 55, 82
RseI CAYNNNNRTG 2 cut(s) 68, 135
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 36
SetI ASST 5 cut(s) 60, 89, 169, 207, 211
SmiMI CAYNNNNRTG 2 cut(s) 68, 135
Sse9I AATT 2 cut(s) 27, 44
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 27, 44
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 2 cut(s) 106, 117
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 109
XapI RAATTY 2 cut(s) 27, 44
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.