RLG00000010003

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010124
Physical Location & Seq
Forward (+)
61626813 .. 61627921
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010003

Sequence Viewer

Length: 354 bp
ATGCAAACATTGGTCGTTCCATCAACTCCCATTCCTATAAACGGTTCCCCTTCTTCACTCCTCGAGCTTCTTCTTCAATATTTCTGGAATCCGCCCTCTAAAATCCTCGAGCTTCTGGTGAAAATGTCGAATATCGGAACTTCAAAGGGAGTACTGGAGATTGCCAAGTTCGGGCTCTACGTTTCCATCCCCATTGTTCTTATGTACACTTTTGCTAACAACAGTAAGAACATCCAGAGATTCATGGGAAATCGTTCTTATGTAGTATATCCACCAGAGGCGCCGAGGCCTCCGTCTCCAGAGGAAATGAGGGAGATGGCACGGGAACTAGCTAGGAAGAACAATTCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

118

Amino Acids

13.22

Weight (kDa)

9.75

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet100 PF09803 51 - 115 6e-10 Pet100
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccII CGCG 1 cut(s) 349
AciI CCGC 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 2 cut(s) 153, 206
AfiI CCNNNNNNNGG 2 cut(s) 41, 171
AgsI TTSAA 2 cut(s) 77, 144
AluBI AGCT 3 cut(s) 67, 112, 332
AluI AGCT 3 cut(s) 67, 112, 332
Alw26I GTCTC 1 cut(s) 300
Ama87I CYCGRG 2 cut(s) 62, 107
AoxI GGCC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 253
AspLEI GCGC 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 2 cut(s) 62, 107
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 177
BccI CCATC 3 cut(s) 28, 194, 310
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 2 cut(s) 329, 333
BfoI RGCGCY 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 153
BmeT110I CYCGRG 2 cut(s) 62, 107
BmiI GGNNCC 2 cut(s) 46, 282
BpmI CTGGAG 2 cut(s) 176, 282
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 171
Bse1I ACTGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 186, 231
BseLI CCNNNNNNNGG 2 cut(s) 41, 171
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 280
BsiHKCI CYCGRG 2 cut(s) 62, 107
BslI CCNNNNNNNGG 2 cut(s) 41, 171
BsmAI GTCTC 1 cut(s) 300
BsmBI CGTCTC 1 cut(s) 300
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 62, 107
Bsp1286I GDGCHC 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 204
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 289
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 2 cut(s) 46, 282
BspT107I GGYRCC 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 284
BssNI GRCGYC 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 44, 224
BstACI GRCGYC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 204
BstF5I GGATG 2 cut(s) 186, 231
BstFNI CGCG 1 cut(s) 349
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 300
BstUI CGCG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 186, 231
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 152, 205
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 67, 112, 175, 289, 332
CviKI_1 RGCY 5 cut(s) 67, 112, 175, 289, 332
CviQI GTAC 2 cut(s) 152, 205
DinI GGCGCC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 177
Eco88I CYCGRG 2 cut(s) 62, 107
EcoT38I GRGCYC 1 cut(s) 177
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 300
FaeI CATG 1 cut(s) 247
FaiI YATR 5 cut(s) 38, 203, 245, 261, 268
FatI CATG 1 cut(s) 243
FokI GGATG 2 cut(s) 173, 218
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 2 cut(s) 329, 333
GlaI GCGC 1 cut(s) 282
GsuI CTGGAG 2 cut(s) 176, 282
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 289
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 2 cut(s) 88, 240
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 3 cut(s) 85, 235, 299
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 2 cut(s) 44, 224
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 281
KasI GGCGCC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 70, 101, 140, 248, 288, 312
MaeI CTAG 2 cut(s) 329, 333
MaeII ACGT 1 cut(s) 180
MboII GAAGA 4 cut(s) 45, 62, 65, 349
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 343
Mly113I GGCGCC 1 cut(s) 281
MnlI CCTC 8 cut(s) 71, 106, 116, 271, 279, 295, 300, 303
MroXI GAANNNNTTC 1 cut(s) 253
MvnI CGCG 1 cut(s) 349
NarI GGCGCC 1 cut(s) 281
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 46, 282
NmeAIII GCCGAG 1 cut(s) 309
PaeR7I CTCGAG 2 cut(s) 62, 107
PceI AGGCCT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 88, 240
PluTI GGCGCC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 46, 282
PspXI VCTCGAGB 2 cut(s) 62, 107
RsaI GTAC 2 cut(s) 153, 206
RsaNI GTAC 2 cut(s) 152, 205
ScaI AGTACT 1 cut(s) 153
SduI GDGCHC 1 cut(s) 177
SetI ASST 4 cut(s) 69, 114, 183, 334
SfoI GGCGCC 1 cut(s) 282
Sfr274I CTCGAG 2 cut(s) 62, 107
SlaI CTCGAG 2 cut(s) 62, 107
SmlI CTYRAG 2 cut(s) 62, 107
SmoI CTYRAG 2 cut(s) 62, 107
Sse9I AATT 1 cut(s) 343
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 1 cut(s) 92
SspDI GGCGCC 1 cut(s) 280
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 329, 333
StuI AGGCCT 1 cut(s) 289
TaaI ACNGT 2 cut(s) 44, 224
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 63, 108, 128
TasI AATT 1 cut(s) 343
TatI WGTACW 2 cut(s) 151, 204
TfiI GAWTC 2 cut(s) 88, 240
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 282
XhoI CTCGAG 2 cut(s) 62, 107
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 329, 333
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.