Rw4G001930

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010124
Physical Location & Seq
Reverse (-)
3510897 .. 3512432
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001930.1

Sequence Viewer

Length: 165 bp
ATGTCGAATATCGGAACTTCAAAGGGAGTACTGGAGATTGCAAAGTTCGGGCTCTACGTCTCCATCCCCATTGTTCTTATGTACACTTTTGCTAACAACAGTAAGAATATCCAGAGATTCATGGGAAATGTGAGCTCTCTATTTCTGTTATTCATGTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

54

Amino Acids

6.07

Weight (kDa)

9.82

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet100 PF09803 9 - 33 7.5e-07 Pet100
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 30, 83
AgsI TTSAA 1 cut(s) 21
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 64
BanII GRGCYC 2 cut(s) 54, 137
Bbv12I GWGCWC 1 cut(s) 137
BccI CCATC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 54, 137
Bsp1407I TGTACA 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 81
BstF5I GGATG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 63
Csp6I GTAC 2 cut(s) 29, 82
CviAII CATG 2 cut(s) 121, 154
CviJI RGCY 2 cut(s) 52, 135
CviKI_1 RGCY 2 cut(s) 52, 135
CviQI GTAC 2 cut(s) 29, 82
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 54, 137
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoT38I GRGCYC 2 cut(s) 54, 137
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 124, 157
FaiI YATR 3 cut(s) 80, 122, 155
FatI CATG 2 cut(s) 120, 153
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 2 cut(s) 54, 137
GsuI CTGGAG 1 cut(s) 53
Hin1II CATG 2 cut(s) 124, 157
HinfI GANTC 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 124, 157
LpnPI CCDG 2 cut(s) 17, 125
MaeII ACGT 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 54, 137
NlaIII CATG 2 cut(s) 124, 157
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 137
RsaI GTAC 2 cut(s) 30, 83
RsaNI GTAC 2 cut(s) 29, 82
SacI GAGCTC 1 cut(s) 137
ScaI AGTACT 1 cut(s) 30
SduI GDGCHC 2 cut(s) 54, 137
SetI ASST 2 cut(s) 60, 137
SgeI CNNG 4 cut(s) 44, 61, 124, 133
SstI GAGCTC 1 cut(s) 137
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 5
TatI WGTACW 2 cut(s) 28, 81
TfiI GAWTC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 109, 142
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.