Rh4CG029200

Pet100

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010124
Physical Location & Seq
Reverse (-)
5436995 .. 5439965
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG029200.1

Sequence Viewer

Length: 321 bp
ATGTACGTCACAATCCCATTCCTATTAACGCTTCCTCTTCTTCAATTTTTCTGGAATCCGCTCTCTAAAATCCTCGAGCTTCTGGTGAAAATGTCGAATATCGGAACTTCAAAGGGAGTACTGGAGATTGCAAAGTTCGGGCTCTACGTCTCCATCCCGATTGTTCTTATGTACACTTTTGCTAACAACAGTAAGAATATCCAGAGATTCATGGGAAATCGTTCTTATGTAGTATATCCACCAGAGGCACCGAGGCCTCCGTCTCCAGAGGAAATGAGGGAGATGGCACGGGAACTAGCTAGGAAGAACAATTCGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pet100

Protein Analysis

106

Amino Acids

12.24

Weight (kDa)

9.91

Isoelectric Point (pI)

60.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet100 PF09803 40 - 104 4.5e-10 Pet100
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52825 AT1G52825 AT4G14615
fragaria_vesca FvH4_4g02000
malus_domestica MD13G1203300.v1.1 MD16G1204700.v1.1
prunus_persica Prupe.1G025800_v2.0.a1
pyrus_communis pycom13g17660
rosa_chinensis RchiOBHm_Chr4g0388961
rosa_laevigata RLG00000010003
rosa_multiflora Rmu_sc0001395.1_g000011 Rmu_sc0013650.1_g000001
rosa_roxburghii Rroxscaffold_5G00335280
rosa_rugosa Rorug03G0321700
rosa_samantha Rh4AG026200 Rh4BG019400 Rh4CG029200 Rh4DG019900
rosa_wichuraiana Rw0G003680 Rw4G001890 Rw4G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AccBSI CCGCTC 1 cut(s) 61
AccII CGCG 1 cut(s) 316
AciI CCGC 1 cut(s) 59
AfaI GTAC 3 cut(s) 5, 120, 173
AgsI TTSAA 2 cut(s) 44, 111
AluBI AGCT 2 cut(s) 79, 299
AluI AGCT 2 cut(s) 79, 299
Alw26I GTCTC 2 cut(s) 154, 267
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 74
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 144
BccI CCATC 2 cut(s) 161, 277
BcoDI GTCTC 2 cut(s) 154, 267
BfaI CTAG 2 cut(s) 296, 300
BmcAI AGTACT 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 143, 249
BsaJI CCNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 154, 267
BsmBI CGTCTC 2 cut(s) 154, 267
BsnI GGCC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 171
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 256
BspFNI CGCG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 171
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 316
BstMAI GTCTC 2 cut(s) 154, 267
BstUI CGCG 1 cut(s) 316
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 153
Csp6I GTAC 3 cut(s) 4, 119, 172
CviAII CATG 1 cut(s) 211
CviJI RGCY 4 cut(s) 79, 142, 256, 299
CviKI_1 RGCY 4 cut(s) 79, 142, 256, 299
CviQI GTAC 3 cut(s) 4, 119, 172
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco147I AGGCCT 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 144
Esp3I CGTCTC 2 cut(s) 154, 267
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 170, 212, 228, 235
FatI CATG 1 cut(s) 210
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 144
FspBI CTAG 2 cut(s) 296, 300
GsuI CTGGAG 2 cut(s) 143, 249
HaeIII GGCC 1 cut(s) 256
Hin1II CATG 1 cut(s) 214
HinfI GANTC 2 cut(s) 55, 207
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 4 cut(s) 52, 157, 202, 266
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 2 cut(s) 6, 147
HpyCH4V TGCA 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 6, 147
Hsp92II CATG 1 cut(s) 214
LpnPI CCDG 6 cut(s) 37, 68, 107, 215, 255, 279
MaeI CTAG 2 cut(s) 296, 300
MaeII ACGT 2 cut(s) 6, 147
MaeIII GTNAC 1 cut(s) 7
MbiI CCGCTC 1 cut(s) 61
MboII GAAGA 3 cut(s) 29, 32, 316
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 44, 310
MnlI CCTC 7 cut(s) 45, 83, 238, 246, 262, 267, 270
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 1 cut(s) 26
MvnI CGCG 1 cut(s) 316
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 7
PaeR7I CTCGAG 1 cut(s) 74
PceI AGGCCT 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 55, 207
PspN4I GGNNCC 1 cut(s) 249
PspXI VCTCGAGB 1 cut(s) 74
RsaI GTAC 3 cut(s) 5, 120, 173
RsaNI GTAC 3 cut(s) 4, 119, 172
SaqAI TTAA 1 cut(s) 26
ScaI AGTACT 1 cut(s) 120
SduI GDGCHC 1 cut(s) 144
SetI ASST 4 cut(s) 9, 81, 150, 301
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 44, 310
SseBI AGGCCT 1 cut(s) 256
SsiI CCGC 1 cut(s) 59
SspMI CTAG 2 cut(s) 296, 300
StuI AGGCCT 1 cut(s) 256
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 2 cut(s) 9, 150
TaqI TCGA 2 cut(s) 75, 95
TasI AATT 2 cut(s) 44, 310
TatI WGTACW 2 cut(s) 118, 171
TfiI GAWTC 2 cut(s) 55, 207
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 249
XhoI CTCGAG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 296, 300
ZrmI AGTACT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.