Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Reverse (-)

9766894 .. 9768831

Gene Structure 1938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGACCGCAAGCGAGAGTTCTTCATCTAAGAGATGGCTTCCACTTGAATCTAACCCAGATGTTATGAATCAGTATCTCTGGGGACTTGGTCTTGCCCCTGATGAAGCAGAGTGCAATGATGTGTATGGGTTAGACGATGAACTTCTAGAGATGGTTCCAAAGCCTGTTCTTGCTGTTCTCTTCCTTTACCCAATCACCAAAAAGAGTGAAGAAGAGAGAATCGAGCAAGACAAGGAAATTAAGGAAAAGGTGCATAGCGATAAAGTTTACTTTATGAAACAAACTGTTGGTAATGCTTGTGGAACCATTGGTCTTCTTCATGCTATTGGGAATATTACCTCTGAAATCAAACTCTCCGACGGATCGTTCTTGGATAGATTCTTCAAATCCACTGCCAACATGACTCCTATGGAGCGTGCCAAGTTTCTCGAGAATGACAGTCAAATAGAAGATGCTCATTCTGTAGCTGTTATAGCTGGTGATACACCTGCTTCAGAAGACGCAGACACGCATTTCATTTGTTTAGCTTGTGTAGAAGGTGAGCTCTATGAACTTGATGGAAGAAAGGCAGGACCGATTTCACACGGTGCTTCCTCTCCAGCTACCCTCCTGAAGGACGCAACAAAAGTGATAAAGAAGATGATCGAGAAGAATCCGGGCTCTCTCAACTTCAACCTGATAGCCATCTCTAAGAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

234

Amino Acids

25.71

Weight (kDa)

4.91

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 217	1.1e-67	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	373
AcuI	CTGAAG	2 cut(s)	480, 635
AdeI	CACNNNGTG	1 cut(s)	590
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	50, 388, 676
AluBI	AGCT	5 cut(s)	470, 479, 530, 547, 605
AluI	AGCT	5 cut(s)	470, 479, 530, 547, 605
Alw21I	GWGCWC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	3 cut(s)	190, 494, 554
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	575
BanII	GRGCYC	2 cut(s)	549, 665
BbsI	GAAGAC	2 cut(s)	308, 507
Bbv12I	GWGCWC	1 cut(s)	549
BccI	CCATC	4 cut(s)	30, 148, 554, 695
BcnI	CCSGG	1 cut(s)	660
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	159, 307
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	2 cut(s)	308, 507
BpmI	CTGGAG	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	686
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmFI	GGGAC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	549, 665
Bsp143I	GATC	2 cut(s)	365, 645
BspACI	CCGC	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	159, 307
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	124
BssMI	GATC	2 cut(s)	365, 645
Bst4CI	ACNGT	3 cut(s)	289, 443, 590
Bst6I	CTCTTC	2 cut(s)	188, 210
BstC8I	GCNNGC	2 cut(s)	13, 420
BstDEI	CTNAG	2 cut(s)	30, 693
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstKTI	GATC	2 cut(s)	368, 648
BstMBI	GATC	2 cut(s)	365, 645
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	465
BstV2I	GAAGAC	2 cut(s)	308, 507
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	13, 420
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	2 cut(s)	512, 629
CviAII	CATG	2 cut(s)	323, 403
CviJI	RGCY	9 cut(s)	40, 166, 470, 479, 530, 547, 605, 663, 686
CviKI_1	RGCY	9 cut(s)	40, 166, 470, 479, 530, 547, 605, 663, 686
DdeI	CTNAG	2 cut(s)	30, 693
DpnI	GATC	2 cut(s)	367, 647
DpnII	GATC	2 cut(s)	365, 645
DraIII	CACNNNGTG	1 cut(s)	590
Eam1104I	CTCTTC	2 cut(s)	188, 210
EarI	CTCTTC	2 cut(s)	188, 210
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	549, 665
Eco47I	GGWCC	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	480, 635
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoT38I	GRGCYC	2 cut(s)	549, 665
FaeI	CATG	2 cut(s)	326, 406
FaiI	YATR	9 cut(s)	68, 129, 258, 278, 324, 404, 413, 476, 552
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	322, 402
FriOI	GRGCYC	2 cut(s)	549, 665
FspBI	CTAG	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	585
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	2 cut(s)	512, 629
Hin1II	CATG	2 cut(s)	326, 406
HinfI	GANTC	6 cut(s)	50, 70, 222, 381, 406, 655
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	3 cut(s)	190, 494, 554
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	346, 361, 499
Hpy188III	TCNNGA	5 cut(s)	149, 431, 433, 613, 649
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	533, 610
HpyCH4III	ACNGT	3 cut(s)	289, 443, 590
HpyCH4V	TGCA	2 cut(s)	117, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	2 cut(s)	30, 693
Hsp92II	CATG	2 cut(s)	326, 406
Kzo9I	GATC	2 cut(s)	365, 645
LmnI	GCTCC	1 cut(s)	415
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	149
MalI	GATC	2 cut(s)	367, 647
MboI	GATC	2 cut(s)	365, 645
MhlI	GDGCHC	2 cut(s)	549, 665
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	352, 607, 620
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	660
NdeII	GATC	2 cut(s)	365, 645
NlaIII	CATG	2 cut(s)	326, 406
NlaIV	GGNNCC	2 cut(s)	159, 307
PaeR7I	CTCGAG	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	499
PfeI	GAWTC	5 cut(s)	50, 70, 222, 381, 655
PflFI	GACNNNGTC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp124BI	GAGCTC	1 cut(s)	549
PspN4I	GGNNCC	2 cut(s)	159, 307
PspPI	GGNCC	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	365, 645
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	2 cut(s)	549, 665
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	658
TaaI	ACNGT	3 cut(s)	289, 443, 590
TaqI	TCGA	3 cut(s)	225, 432, 648
TaqII	GACCGA	1 cut(s)	592
TasI	AATT	1 cut(s)	240
TfiI	GAWTC	5 cut(s)	50, 70, 222, 381, 655
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	8 cut(s)	15, 83, 120, 156, 293, 311, 508, 567
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	400
Tth111I	GACNNNGTC	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	614
XbaI	TCTAGA	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	431
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.