Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

7036160 .. 7040029

Gene Structure 3870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1051100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTGCTTTGGACGAAGCCCCGTCGGCTAAGAGATGGCTTCCTCTCGAAGCTAACCCTGATGTTATGAACCAGTTCCTTTGGGGCCTGGGTCTTCAAGAGAATGAGGCAGAATGCTTTGATGTTTACGGGTTGGATGGAGAACTCTTAGAAATGGTTCCGAAGCCTGTACTTGCTGTCCTGTTTCTTTATCCTATAACTGCTAAGACTGAAGAAGAGAGAATGATGCAGGCAAATGAAAAACAGGAACCCAAAGGTAGTGTTTATTTTATGAAACAAACTGTGGGCAATGCTTGTGGAACTATTGGGCTTCTTCATGCTGTTGGAAACATCAATTCAGAGATCAAACTTGTTGAGGATTCATTCTTGGATAGGTTTTTCAAAAAAACTGCAAGCATGGATCCATTGCAGCGTGCAGCATTCCTTGAAAGTGACCCAGAAATGGAAGTTGCTCATTCAGTAGCAGCTAATGGTGGCGATACAGAGGCATCCGACAATGTGGACACTCACTTTATTTGCTTTGCATGTGTGGACGGGGAGCTTTATGAGCTTGATGGGAGGAAGTCAGGTCCAATCTCTCACGGTCCATCTTCACCAGACAGTCTATTGCAGGATGCAGCTAAAGTCATACAGGGCATGATCCAGAAAAATCCCGACTCCCTCAACTTCAATGTGATTGCAATTTCGAAGAAATCTGGTGGGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

237

Amino Acids

25.73

Weight (kDa)

4.53

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 215	6.3e-67	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	395, 408, 634
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	98, 382, 428, 670
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	5 cut(s)	53, 467, 541, 550, 620
AluI	AGCT	5 cut(s)	53, 467, 541, 550, 620
AlwI	GGATC	3 cut(s)	395, 408, 634
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	5 cut(s)	5, 409, 416, 464, 617
Asp700I	GAANNNNTTC	2 cut(s)	74, 156
AspS9I	GGNCC	3 cut(s)	85, 569, 584
AsuHPI	GGTGA	1 cut(s)	585
AsuII	TTCGAA	1 cut(s)	686
AvaII	GGWCC	2 cut(s)	569, 584
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	421, 428, 476, 629
BccI	CCATC	4 cut(s)	30, 131, 548, 595
BciT130I	CCWGG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
BlsI	GCNGC	5 cut(s)	7, 411, 418, 466, 619
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	2 cut(s)	569, 584
BmgT120I	GGNCC	3 cut(s)	85, 569, 584
BmiI	GGNNCC	4 cut(s)	86, 159, 249, 402
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	216, 497, 604
BpiI	GAAGAC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	295, 404
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	142, 488, 619
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMI	GCAATG	2 cut(s)	295, 404
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	421, 428, 476, 629
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmI	GAATGC	2 cut(s)	119, 419
BsnI	GGCC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	342, 400, 639
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	86, 159, 249, 402
BspPI	GGATC	3 cut(s)	395, 408, 634
BspT104I	TTCGAA	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	295, 404
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	342, 400, 639
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	283, 584, 602
Bst6I	CTCTTC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	231, 394, 414
BstDEI	CTNAG	3 cut(s)	30, 148, 204
BstF5I	GGATG	3 cut(s)	142, 488, 619
BstKTI	GATC	3 cut(s)	345, 403, 642
BstMBI	GATC	3 cut(s)	342, 400, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 547
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	4 cut(s)	421, 428, 476, 629
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	142, 488, 619
Cac8I	GCNNGC	3 cut(s)	231, 394, 414
Cfr13I	GGNCC	3 cut(s)	85, 569, 584
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	317, 397, 525, 637
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	30, 148, 204
DpnI	GATC	3 cut(s)	344, 402, 641
DpnII	GATC	3 cut(s)	342, 400, 639
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	569, 584
Eco57I	CTGAAG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	320, 400, 528, 640
FaiI	YATR	9 cut(s)	68, 197, 272, 318, 398, 526, 546, 629, 638
FatI	CATG	4 cut(s)	316, 396, 524, 636
Fnu4HI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
FokI	GGATG	3 cut(s)	149, 475, 626
Fsp4HI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
GluI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	320, 400, 528, 640
HinfI	GANTC	2 cut(s)	359, 656
HphI	GGTGA	1 cut(s)	585
Hpy166II	GTNNAC	3 cut(s)	127, 502, 532
Hpy188I	TCNGA	3 cut(s)	162, 340, 493
Hpy188III	TCNNGA	4 cut(s)	47, 98, 643, 653
Hpy8I	GTNNAC	3 cut(s)	127, 502, 532
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	283, 584, 602
HpyCH4V	TGCA	8 cut(s)	229, 392, 409, 416, 524, 610, 617, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 547
HpyF3I	CTNAG	3 cut(s)	30, 148, 204
Hsp92II	CATG	4 cut(s)	320, 400, 528, 640
Kzo9I	GATC	3 cut(s)	342, 400, 639
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	4 cut(s)	421, 428, 476, 629
LweI	GCATC	3 cut(s)	216, 497, 604
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	344, 402, 641
MboI	GATC	3 cut(s)	342, 400, 639
MboII	GAAGA	6 cut(s)	86, 224, 227, 305, 582, 700
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	2 cut(s)	334, 681
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	3 cut(s)	114, 304, 516
MnlI	CCTC	6 cut(s)	54, 100, 349, 478, 552, 671
MroXI	GAANNNNTTC	2 cut(s)	74, 156
MseI	TTAA	1 cut(s)	709
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	2 cut(s)	119, 419
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	26, 547
NdeII	GATC	3 cut(s)	342, 400, 639
NlaIII	CATG	4 cut(s)	320, 400, 528, 640
NlaIV	GGNNCC	4 cut(s)	86, 159, 249, 402
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	686
PctI	GAATGC	2 cut(s)	119, 419
PdmI	GAANNNNTTC	2 cut(s)	74, 156
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	7, 411, 418, 466, 619
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	86, 159, 249, 402
PspPI	GGNCC	3 cut(s)	85, 569, 584
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	709
SatI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
Sau3AI	GATC	3 cut(s)	342, 400, 639
Sau96I	GGNCC	3 cut(s)	85, 569, 584
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	8 cut(s)	55, 259, 377, 469, 543, 552, 571, 622
SfaNI	GCATC	3 cut(s)	216, 497, 604
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	2 cut(s)	569, 584
Sse9I	AATT	2 cut(s)	334, 681
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	283, 584, 602
TaqI	TCGA	2 cut(s)	48, 686
TasI	AATT	2 cut(s)	334, 681
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	709
Tru9I	TTAA	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	5 cut(s)	5, 409, 416, 464, 617
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	83, 252, 287, 305, 351
VpaK11BI	GGWCC	2 cut(s)	569, 584
XceI	RCATGY	1 cut(s)	528
XmnI	GAANNNNTTC	2 cut(s)	74, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.