Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

6717041 .. 6717754

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0085400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCAGTTGACAGCACAACAAGGCTTATCCTTGCTAATGCATTATACTTTAAAGGAGATTGGACTGAGAAGTTCGACGCATCACTTACAAAAACAGATGATTTCCACCTTATCGATGGGAGGAGGTCAGTAAAGGCACCCTTCATGACCAGCTGGAATAAACAATTCATAAGTGCCTTTGACGGTTTCAAAGTCTTAAAGCTTCCTTACGAACAAGATGGAGATCACATTCGGCGTTTCTCCATGTATGTGTATCTTCCAAATGCAATAGATGGCCTGCCAGCTTTAGTTGAGAGAGTTTGTTCAGAGTCTGGATTTGTGGATCGCTATCTTCCCCACTTTGCAGTTAAAGTTGGTAGATTTTTAATCCCGAAGTTTAAGTTCTCTGCTGGCTTTGAGGTTAAAGAAGTTCTGCGAACTTTAGGACTAGACTTGCCATTTCGTCCTGGAAGTTTGTCACAGATGGTGGACTCATCTTTGGGGCTTTTTATTTCTCGCATACTCCATAAATCCTTCATTGAAGTTAATGAAGATGGCACAGAAGCTGCGGCTGTTACTGTTGCTTTTGCTTTTTATGACTGTTGCTCAATCATAGATCCTCCTCCTCCGATAGACTTTGTGGCAGATCACCCATTCCTTTTCCTGATCAGAGAAGAAATGTCTGGAGCAGTGCTGTTCATCGGTCATGTCCTCAATCCCATTGCAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

237

Amino Acids

26.69

Weight (kDa)

5.51

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	3 - 233	9.8e-56	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	2 cut(s)	330, 590
AgsI	TTSAA	2 cut(s)	190, 521
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	153, 202, 284, 545
AluI	AGCT	4 cut(s)	153, 202, 284, 545
AlwI	GGATC	2 cut(s)	330, 590
AlwNI	CAGNNNCTG	2 cut(s)	311, 545
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	5 cut(s)	110, 212, 266, 457, 527
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	645
BfaI	CTAG	1 cut(s)	428
BisI	GCNGC	2 cut(s)	546, 549
BlsI	GCNGC	2 cut(s)	547, 550
Bme1390I	CCNGG	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	684
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	2 cut(s)	222, 327
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	2 cut(s)	222, 327
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	114
BseJI	GATNNNNATC	2 cut(s)	222, 327
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	3 cut(s)	136, 591, 594
BseXI	GCAGC	1 cut(s)	532
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	114
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	330, 590
BspT107I	GGYRCC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	699
BssMI	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	185, 559, 581
BstC8I	GCNNGC	3 cut(s)	278, 282, 391
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	6 cut(s)	226, 325, 598, 628, 648, 709
BstMBI	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	532
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	3 cut(s)	278, 282, 391
CaiI	CAGNNNCTG	2 cut(s)	311, 545
CciI	TCATGA	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	86
CviAII	CATG	3 cut(s)	145, 244, 686
CviJI	RGCY	9 cut(s)	25, 153, 202, 276, 284, 393, 484, 545, 551
CviKI_1	RGCY	9 cut(s)	25, 153, 202, 276, 284, 393, 484, 545, 551
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	6 cut(s)	225, 324, 597, 627, 647, 708
DpnII	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
DraI	TTTAAA	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	3 cut(s)	148, 247, 689
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	3 cut(s)	144, 243, 685
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	2 cut(s)	546, 549
Fsp4HI	GCNGC	2 cut(s)	546, 549
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	2 cut(s)	546, 549
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	1 cut(s)	276
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	148, 247, 689
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	308, 470
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	2 cut(s)	10, 469
Hpy188I	TCNGA	3 cut(s)	307, 609, 650
Hpy188III	TCNNGA	5 cut(s)	145, 312, 370, 643, 663
Hpy8I	GTNNAC	2 cut(s)	10, 469
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	151, 523
HpyCH4III	ACNGT	3 cut(s)	185, 559, 581
HpyCH4V	TGCA	4 cut(s)	41, 266, 344, 704
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	148, 247, 689
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	456, 553
MalI	GATC	6 cut(s)	225, 324, 597, 627, 647, 708
MboI	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
MboII	GAAGA	4 cut(s)	248, 323, 542, 665
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	2 cut(s)	317, 464
MnlI	CCTC	7 cut(s)	114, 117, 391, 609, 612, 615, 701
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	7 cut(s)	51, 197, 348, 365, 378, 402, 525
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
NdeII	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
NlaIII	CATG	3 cut(s)	148, 247, 689
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	43
PagI	TCATGA	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	2 cut(s)	547, 550
PleI	GAGTC	2 cut(s)	316, 464
PpsI	GAGTC	2 cut(s)	316, 464
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	138
PstNI	CAGNNNCTG	2 cut(s)	311, 545
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	7 cut(s)	51, 197, 348, 365, 378, 402, 525
SatI	GCNGC	2 cut(s)	546, 549
Sau3AI	GATC	6 cut(s)	223, 322, 595, 625, 645, 706
SchI	GAGTC	2 cut(s)	317, 464
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	7 cut(s)	111, 128, 155, 204, 286, 402, 547
SfaNI	GCATC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	185, 559, 581
TaqI	TCGA	2 cut(s)	75, 114
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	551
Tru1I	TTAA	7 cut(s)	51, 197, 348, 365, 378, 402, 525
Tru9I	TTAA	7 cut(s)	51, 197, 348, 365, 378, 402, 525
TscAI	CASTG	1 cut(s)	675
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	5 cut(s)	133, 157, 505, 543, 667
TspRI	CASTG	1 cut(s)	675
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.