Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Reverse (-)

20291527 .. 20296270

Gene Structure 4744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCCCACTACCCAAAACCTATATATATATAAACCACAGTCCACAGCAACAAAACAAGTCTCAGAATTCCCTCAACACACGAAAAGGAGAAGGCAGCAGAACAATATCAAATCCAATCAAATGGCTTCTCCCTACAGAACCCAGGCCGCTAAGAGATGGCTTCCTCTTGAAGCTAATCCCGATGTTATGAACCAGTTCCTTTGGGGATTGGGTCTTCAAGAGGATGAGGCAGAATGCTATGACGTTTACGGTTTGGATGGAGAACTCTTAGAAATGGTTCCAAAGCCTGTACTTGCTGTGCTGTTTCTTTATCCTTTAACCCCCAAGACTGAAGAAGAGAGAATGATGCAGTTAAATGAAAAACAGGAAACCAAAGATAATGTTTATTTTATGAAACAAACCGTGGGCAATGCTTGTGGAACTATTGGACTTCTGCATGCTGTTGGAAACATCACTTCAGAGATCAAACTTGTTGACGGGTCATTCTTGGATAGATTTTTTAAAAGTACTGCAAGCATGGATCCATTGGAGCGTGCAGCATTCCTTGAAAATGACAATGAAATGGAAGTTGCTCATTCAGTAGCAGCTACTGCTGGTGACACGGAGGCTACAGATGAGGTTGACACTCACTTTATCAGCTATGCATGTGTGGACGGGGAACTATATGAGCTTGATGGGAGGAAGTCAGGTCCGATCTCTCACGGCCCGTCTTCACCAACCACTATATTACAGGATGCAGCTAAAGTCATACAGGGCATGATCCAGAAAAATCCCGAGTCTCTCAACTTCAACGTCATTGCCATTTCGAAGAAATCTGGGGGATTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

276

Amino Acids

30.77

Weight (kDa)

4.99

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	53 - 255	4.8e-67	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	515, 528, 754
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	2 cut(s)	351, 441
AfaI	GTAC	2 cut(s)	291, 508
AgsI	TTSAA	4 cut(s)	170, 218, 548, 790
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	5 cut(s)	173, 587, 639, 670, 740
AluI	AGCT	5 cut(s)	173, 587, 639, 670, 740
Alw26I	GTCTC	2 cut(s)	64, 783
AlwI	GGATC	3 cut(s)	515, 528, 754
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	144, 703
ApeKI	GCWGC	4 cut(s)	94, 536, 584, 737
ApoI	RAATTY	1 cut(s)	65
Asp700I	GAANNNNTTC	2 cut(s)	194, 276
AspS9I	GGNCC	2 cut(s)	689, 704
AsuHPI	GGTGA	2 cut(s)	608, 705
AsuII	TTCGAA	1 cut(s)	806
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	206, 702
BbvI	GCAGC	4 cut(s)	106, 548, 596, 749
BccI	CCATC	3 cut(s)	150, 251, 668
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	64, 783
BfmI	CTRYAG	2 cut(s)	133, 609
BisI	GCNGC	5 cut(s)	95, 147, 537, 585, 738
BlsI	GCNGC	5 cut(s)	96, 148, 538, 586, 739
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	689, 704
BmiI	GGNNCC	2 cut(s)	279, 522
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	336, 724
BpiI	GAAGAC	2 cut(s)	206, 702
Bpu14I	TTCGAA	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	141, 402
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	2 cut(s)	415, 795
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	141, 402
BseGI	GGATG	3 cut(s)	229, 262, 739
BseMI	GCAATG	2 cut(s)	415, 795
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	4 cut(s)	106, 548, 596, 749
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	146, 705
BsiHKCI	CYCGRG	1 cut(s)	773
BsmAI	GTCTC	2 cut(s)	64, 783
BsmI	GAATGC	2 cut(s)	239, 539
BsnI	GGCC	2 cut(s)	146, 705
BsoBI	CYCGRG	1 cut(s)	773
Bsp119I	TTCGAA	1 cut(s)	806
Bsp143I	GATC	4 cut(s)	462, 520, 693, 759
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	146, 705
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	279, 522
BspPI	GGATC	3 cut(s)	515, 528, 754
BspT104I	TTCGAA	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	415, 795
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	141, 402
BssMI	GATC	4 cut(s)	462, 520, 693, 759
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	3 cut(s)	39, 251, 403
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBI	TTCGAA	1 cut(s)	806
BstC8I	GCNNGC	3 cut(s)	438, 514, 534
BstDEI	CTNAG	3 cut(s)	61, 150, 268
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	229, 262, 739
BstKTI	GATC	4 cut(s)	465, 523, 696, 762
BstMAI	GTCTC	2 cut(s)	64, 783
BstMBI	GATC	4 cut(s)	462, 520, 693, 759
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	440, 648
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	2 cut(s)	133, 609
BstV1I	GCAGC	4 cut(s)	106, 548, 596, 749
BstV2I	GAAGAC	2 cut(s)	206, 702
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	146, 705
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	229, 262, 739
Cac8I	GCNNGC	3 cut(s)	438, 514, 534
CaiI	CAGNNNCTG	1 cut(s)	590
Cfr13I	GGNCC	2 cut(s)	689, 704
Csp6I	GTAC	2 cut(s)	290, 507
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	4 cut(s)	437, 517, 645, 757
CviQI	GTAC	2 cut(s)	290, 507
DdeI	CTNAG	3 cut(s)	61, 150, 268
DpnI	GATC	4 cut(s)	464, 522, 695, 761
DpnII	GATC	4 cut(s)	462, 520, 693, 759
DraI	TTTAAA	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	689
Eco57I	CTGAAG	2 cut(s)	351, 441
Eco88I	CYCGRG	1 cut(s)	773
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	646
FaeI	CATG	4 cut(s)	440, 520, 648, 760
FatI	CATG	4 cut(s)	436, 516, 644, 756
Fnu4HI	GCNGC	5 cut(s)	95, 147, 537, 585, 738
FokI	GGATG	3 cut(s)	236, 269, 746
Fsp4HI	GCNGC	5 cut(s)	95, 147, 537, 585, 738
GluI	GCNGC	5 cut(s)	95, 147, 537, 585, 738
HaeIII	GGCC	2 cut(s)	146, 705
Hin1II	CATG	4 cut(s)	440, 520, 648, 760
HincII	GTYRAC	2 cut(s)	475, 622
HindII	GTYRAC	2 cut(s)	475, 622
HinfI	GANTC	1 cut(s)	776
HphI	GGTGA	2 cut(s)	608, 705
Hpy166II	GTNNAC	5 cut(s)	42, 247, 475, 622, 652
Hpy188I	TCNGA	3 cut(s)	64, 460, 693
Hpy188III	TCNNGA	5 cut(s)	167, 179, 218, 763, 773
Hpy8I	GTNNAC	5 cut(s)	42, 247, 475, 622, 652
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	3 cut(s)	39, 251, 403
HpyCH4IV	ACGT	2 cut(s)	243, 792
HpyCH4V	TGCA	6 cut(s)	349, 436, 512, 536, 644, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	3 cut(s)	61, 150, 268
HpySE526I	ACGT	2 cut(s)	243, 792
Hsp92II	CATG	4 cut(s)	440, 520, 648, 760
Kzo9I	GATC	4 cut(s)	462, 520, 693, 759
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	4 cut(s)	106, 548, 596, 749
LweI	GCATC	2 cut(s)	336, 724
MaeII	ACGT	2 cut(s)	243, 792
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	4 cut(s)	464, 522, 695, 761
MboI	GATC	4 cut(s)	462, 520, 693, 759
MboII	GAAGA	5 cut(s)	206, 344, 347, 702, 820
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	785
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	7 cut(s)	81, 174, 214, 220, 598, 610, 672
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	2 cut(s)	194, 276
MseI	TTAA	4 cut(s)	317, 353, 501, 829
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	2 cut(s)	239, 539
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeII	GATC	4 cut(s)	462, 520, 693, 759
NlaIII	CATG	4 cut(s)	440, 520, 648, 760
NlaIV	GGNNCC	2 cut(s)	279, 522
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	2 cut(s)	440, 648
NspV	TTCGAA	1 cut(s)	806
PaeI	GCATGC	1 cut(s)	440
PctI	GAATGC	2 cut(s)	239, 539
PdmI	GAANNNNTTC	2 cut(s)	194, 276
PkrI	GCNGC	5 cut(s)	96, 148, 538, 586, 739
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	279, 522
PspPI	GGNCC	2 cut(s)	689, 704
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	2 cut(s)	291, 508
RsaNI	GTAC	2 cut(s)	290, 507
SaqAI	TTAA	4 cut(s)	317, 353, 501, 829
SatI	GCNGC	5 cut(s)	95, 147, 537, 585, 738
Sau3AI	GATC	4 cut(s)	462, 520, 693, 759
Sau96I	GGNCC	2 cut(s)	689, 704
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	1 cut(s)	785
ScrFI	CCNGG	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	336, 724
SfcI	CTRYAG	2 cut(s)	133, 609
SfuI	TTCGAA	1 cut(s)	806
SinI	GGWCC	1 cut(s)	689
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	39, 251, 403
TaiI	ACGT	2 cut(s)	246, 795
TaqI	TCGA	1 cut(s)	806
TasI	AATT	1 cut(s)	65
TatI	WGTACW	2 cut(s)	289, 506
TauI	GCSGC	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	317, 353, 501, 829
Tru9I	TTAA	4 cut(s)	317, 353, 501, 829
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	4 cut(s)	94, 536, 584, 737
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	4 cut(s)	203, 372, 407, 573
TspGWI	ACGGA	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	2 cut(s)	440, 648
XmnI	GAANNNNTTC	2 cut(s)	194, 276
ZrmI	AGTACT	1 cut(s)	508
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.