Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Reverse (-)

11691000 .. 11694691

Gene Structure 3692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTTCTTCGTACAGAACCCAGTCCGCTAAGAGATGGCTTCCTCTTGAAGCTAATCCCGATGTTATGAACCAGTTCCTTTGGGGACTGGGCCTTCAAGAGGATGACGCAGAATGCTATGACGTTTATGGGTTGGATGGAGAACTCTTAGAAATGGTTCCAAAGCCTGTACTTGCTGTGCTGTTTCTTTATCCTTTAAACCCTAAGACTGAAGAAGAGAGAATGATGCAGTTAAATGAAAACCAGGAAACCAAAGGTAATGTTTATTTTATGAAACAAACCGTGGGCAATGCTTGTGGAACTATTGGACTCCTTCATGCTGTTGGAAACATCACTTCAGAGATCAAACTTGTTGATGGGTCATACTTGGATAGATTTTTCAGAAGTACTGCAAGCATGGATCCATTGCAGCGTGCAGCATTCCTTGAGAATGACAATGAAATGGAAGTTGCTCATTCAGTAGCAGCTACTGCTGGTGACACAGAGGCTTCAGATGATGTTGACACTCACTTTATCTGCTATGCATGTGTGGATGGGGAACTATATGAGCTTGATGGGAGGAAGTCTGGTCCAATCTCTCACGGCCCGTCTTCACCAAACACTCTATTACAGGATGCAGCTAAAGTCATACAAGGGGTGATCCAGAAAAATCCCGAGTCTCTCAACTTCAACGTCATTGCCATTTCGAAGAAATCCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

234

Amino Acids

25.65

Weight (kDa)

4.54

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 214	7.9e-67	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	395, 408, 634
AcuI	CTGAAG	3 cut(s)	231, 321, 474
AfaI	GTAC	3 cut(s)	14, 171, 388
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	50, 98, 670
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	53, 467, 550, 620
AluI	AGCT	4 cut(s)	53, 467, 550, 620
Alw26I	GTCTC	1 cut(s)	663
AlwI	GGATC	3 cut(s)	395, 408, 634
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	2 cut(s)	91, 583
ApeKI	GCWGC	4 cut(s)	409, 416, 464, 617
Asp700I	GAANNNNTTC	2 cut(s)	74, 156
AspS9I	GGNCC	3 cut(s)	91, 569, 584
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	3 cut(s)	488, 585, 649
AsuII	TTCGAA	1 cut(s)	686
AvaI	CYCGRG	1 cut(s)	653
AvaII	GGWCC	1 cut(s)	569
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	4 cut(s)	421, 428, 476, 629
BccI	CCATC	5 cut(s)	30, 131, 350, 527, 548
BceAI	ACGGC	1 cut(s)	598
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	1 cut(s)	663
BisI	GCNGC	4 cut(s)	410, 417, 465, 618
BlsI	GCNGC	4 cut(s)	411, 418, 466, 619
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	245, 697
Bme18I	GGWCC	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	3 cut(s)	91, 569, 584
BmiI	GGNNCC	2 cut(s)	159, 402
BmrFI	CCNGG	2 cut(s)	245, 697
BmrI	ACTGGG	2 cut(s)	16, 98
BmsI	GCATC	2 cut(s)	216, 604
BmuI	ACTGGG	2 cut(s)	16, 98
BpiI	GAAGAC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	3 cut(s)	22, 73, 93
Bse3DI	GCAATG	3 cut(s)	295, 404, 675
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	4 cut(s)	109, 142, 538, 619
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	3 cut(s)	295, 404, 675
BseNI	ACTGG	3 cut(s)	22, 73, 93
BseXI	GCAGC	4 cut(s)	421, 428, 476, 629
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	93, 585
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	696
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	2 cut(s)	119, 419
BsnI	GGCC	2 cut(s)	93, 585
BsoBI	CYCGRG	1 cut(s)	653
Bsp119I	TTCGAA	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	342, 400, 639
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	93, 585
BspLI	GGNNCC	2 cut(s)	159, 402
BspPI	GGATC	3 cut(s)	395, 408, 634
BspT104I	TTCGAA	1 cut(s)	686
BsrDI	GCAATG	3 cut(s)	295, 404, 675
BsrI	ACTGG	3 cut(s)	22, 73, 93
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	342, 400, 639
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	394, 414
BstDEI	CTNAG	3 cut(s)	30, 148, 204
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	4 cut(s)	109, 142, 538, 619
BstKTI	GATC	3 cut(s)	345, 403, 642
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	3 cut(s)	342, 400, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	243, 695
BstV1I	GCAGC	4 cut(s)	421, 428, 476, 629
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	93, 585
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	4 cut(s)	109, 142, 538, 619
Cac8I	GCNNGC	2 cut(s)	394, 414
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	91, 569, 584
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	13, 170, 387
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	3 cut(s)	317, 397, 525
CviQI	GTAC	3 cut(s)	13, 170, 387
DdeI	CTNAG	3 cut(s)	30, 148, 204
DpnI	GATC	3 cut(s)	344, 402, 641
DpnII	GATC	3 cut(s)	342, 400, 639
DraI	TTTAAA	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	3 cut(s)	231, 321, 474
Eco88I	CYCGRG	1 cut(s)	653
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	526
FaeI	CATG	3 cut(s)	320, 400, 528
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	3 cut(s)	316, 396, 524
Fnu4HI	GCNGC	4 cut(s)	410, 417, 465, 618
FokI	GGATG	4 cut(s)	116, 149, 545, 626
Fsp4HI	GCNGC	4 cut(s)	410, 417, 465, 618
GluI	GCNGC	4 cut(s)	410, 417, 465, 618
HaeIII	GGCC	2 cut(s)	93, 585
HapII	CCGG	1 cut(s)	696
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	320, 400, 528
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	309, 656
HpaII	CCGG	1 cut(s)	696
HphI	GGTGA	3 cut(s)	488, 585, 649
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	3 cut(s)	340, 383, 493
Hpy188III	TCNNGA	5 cut(s)	47, 59, 98, 643, 653
Hpy8I	GTNNAC	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	104, 323
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	123, 672
HpyCH4V	TGCA	6 cut(s)	229, 392, 409, 416, 524, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	3 cut(s)	30, 148, 204
HpySE526I	ACGT	2 cut(s)	123, 672
Hsp92II	CATG	3 cut(s)	320, 400, 528
Kzo9I	GATC	3 cut(s)	342, 400, 639
Lsp1109I	GCAGC	4 cut(s)	421, 428, 476, 629
LweI	GCATC	2 cut(s)	216, 604
MaeII	ACGT	2 cut(s)	123, 672
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	3 cut(s)	344, 402, 641
MboI	GATC	3 cut(s)	342, 400, 639
MboII	GAAGA	4 cut(s)	224, 227, 582, 700
MflI	RGATCY	1 cut(s)	400
MlyI	GAGTC	2 cut(s)	303, 665
MmeI	TCCRAC	2 cut(s)	114, 304
MnlI	CCTC	4 cut(s)	54, 94, 478, 552
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	2 cut(s)	74, 156
MseI	TTAA	2 cut(s)	197, 233
MspI	CCGG	1 cut(s)	696
MspR9I	CCNGG	2 cut(s)	245, 697
Mva1269I	GAATGC	2 cut(s)	119, 419
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	470
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	3 cut(s)	342, 400, 639
NlaIII	CATG	3 cut(s)	320, 400, 528
NlaIV	GGNNCC	2 cut(s)	159, 402
NmuCI	GTSAC	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	686
PctI	GAATGC	2 cut(s)	119, 419
PdmI	GAANNNNTTC	2 cut(s)	74, 156
PkrI	GCNGC	4 cut(s)	411, 418, 466, 619
PleI	GAGTC	2 cut(s)	303, 664
PpsI	GAGTC	2 cut(s)	303, 664
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	159, 402
PspPI	GGNCC	3 cut(s)	91, 569, 584
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	3 cut(s)	14, 171, 388
RsaNI	GTAC	3 cut(s)	13, 170, 387
SaqAI	TTAA	2 cut(s)	197, 233
SatI	GCNGC	4 cut(s)	410, 417, 465, 618
Sau3AI	GATC	3 cut(s)	342, 400, 639
Sau96I	GGNCC	3 cut(s)	91, 569, 584
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	2 cut(s)	303, 665
ScrFI	CCNGG	2 cut(s)	245, 697
SetI	ASST	7 cut(s)	55, 126, 259, 469, 552, 622, 675
SfaNI	GCATC	2 cut(s)	216, 604
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SsiI	CCGC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	243, 695
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	2 cut(s)	126, 675
TaqI	TCGA	1 cut(s)	686
TatI	WGTACW	2 cut(s)	169, 386
Tru1I	TTAA	2 cut(s)	197, 233
Tru9I	TTAA	2 cut(s)	197, 233
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	4 cut(s)	409, 416, 464, 617
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	5 cut(s)	83, 252, 287, 305, 453
VpaK11BI	GGWCC	1 cut(s)	569
XagI	CCTNNNNNAGG	1 cut(s)	98
XceI	RCATGY	1 cut(s)	528
XmnI	GAANNNNTTC	2 cut(s)	74, 156
ZrmI	AGTACT	1 cut(s)	388
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.