Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Reverse (-)

21309428 .. 21313421

Gene Structure 3994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG228400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTTCTCCCTACAGAACCCAGGCCGCCAAGAGATGGCTTCCTCTTGAAGCTAATCCCGATGTTATGAACCAGTTTCTTTGGGGATTGGGTCTTCAAGAGGATGAGGCAGAATGCTATGACGTTTACGGTTTGGATGGAGAACTCTTAGAAATGGTTCCAAAGCCTGTACTTGCTGTGCTGTTTCTTTATCCTTTAACCCCCAAGACTGAAGAAGAGAGAATGATGCAGTTAAATGAAAAACAGGAAACCAAAGATAATGTTTATTTTATGAAACAAACCGTGGGCAATGCTTGTGGAACTATTGGACTTCTGCATGCTGTTGGAAACATCACTTCAGAGATCAAACTTGTTGACGGGTCATTCTTGGATAGATTTTTTAAAAGTACTGCAAGCATGGATCCATTGGAGCGTGCAGCATTCCTTGAAAATGACAATGAAATGGAAGTTGCTCATTCAGTAGCAGCTACTGCTGGTGACACAGAGGTGATATATTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

167

Amino Acids

18.78

Weight (kDa)

4.48

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 162	3e-46	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	36
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	395, 408
AcuI	CTGAAG	2 cut(s)	231, 321
AfaI	GTAC	2 cut(s)	171, 388
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	50, 98, 428
AjnI	CCWGG	1 cut(s)	21
AleI	CACNNNNGTG	1 cut(s)	485
AluBI	AGCT	2 cut(s)	53, 467
AluI	AGCT	2 cut(s)	53, 467
AlwI	GGATC	2 cut(s)	395, 408
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	416, 464
Asp700I	GAANNNNTTC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	488, 499
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	428, 476
BccI	CCATC	2 cut(s)	30, 131
BciT130I	CCWGG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	3 cut(s)	27, 417, 465
BlsI	GCNGC	3 cut(s)	28, 418, 466
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	159, 402
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	21, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	21, 282
BseGI	GGATG	2 cut(s)	109, 142
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	428, 476
BsgI	GTGCAG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmI	GAATGC	2 cut(s)	119, 419
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	342, 400
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	159, 402
BspPI	GGATC	2 cut(s)	395, 408
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	21, 282
BssMI	GATC	2 cut(s)	342, 400
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	131, 283
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	318, 394, 414
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	109, 142
BstKTI	GATC	2 cut(s)	345, 403
BstMBI	GATC	2 cut(s)	342, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	428, 476
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	109, 142
Cac8I	GCNNGC	3 cut(s)	318, 394, 414
CaiI	CAGNNNCTG	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	170, 387
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	2 cut(s)	317, 397
CviJI	RGCY	6 cut(s)	5, 26, 40, 53, 166, 467
CviKI_1	RGCY	6 cut(s)	5, 26, 40, 53, 166, 467
CviQI	GTAC	2 cut(s)	170, 387
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	2 cut(s)	344, 402
DpnII	GATC	2 cut(s)	342, 400
DraI	TTTAAA	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	231, 321
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	320, 400
FaiI	YATR	6 cut(s)	68, 120, 272, 318, 398, 493
FatI	CATG	2 cut(s)	316, 396
Fnu4HI	GCNGC	3 cut(s)	27, 417, 465
FokI	GGATG	2 cut(s)	116, 149
Fsp4HI	GCNGC	3 cut(s)	27, 417, 465
GluI	GCNGC	3 cut(s)	27, 417, 465
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	320, 400
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HphI	GGTGA	2 cut(s)	488, 499
Hpy166II	GTNNAC	2 cut(s)	127, 355
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	3 cut(s)	47, 59, 98
Hpy8I	GTNNAC	2 cut(s)	127, 355
HpyCH4III	ACNGT	2 cut(s)	131, 283
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	229, 316, 392, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	320, 400
Kzo9I	GATC	2 cut(s)	342, 400
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	6 cut(s)	8, 35, 86, 180, 230, 459
Lsp1109I	GCAGC	2 cut(s)	428, 476
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	344, 402
MboI	GATC	2 cut(s)	342, 400
MboII	GAAGA	3 cut(s)	86, 224, 227
MflI	RGATCY	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	54, 94, 100, 478
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	4 cut(s)	197, 233, 381, 498
MslI	CAYNNNNRTG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	2 cut(s)	119, 419
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	2 cut(s)	342, 400
NlaIII	CATG	2 cut(s)	320, 400
NlaIV	GGNNCC	2 cut(s)	159, 402
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	485
PaeI	GCATGC	1 cut(s)	320
PctI	GAATGC	2 cut(s)	119, 419
PdmI	GAANNNNTTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	3 cut(s)	28, 418, 466
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	159, 402
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	2 cut(s)	171, 388
RsaNI	GTAC	2 cut(s)	170, 387
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	4 cut(s)	197, 233, 381, 498
SatI	GCNGC	3 cut(s)	27, 417, 465
Sau3AI	GATC	2 cut(s)	342, 400
ScaI	AGTACT	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	4 cut(s)	55, 126, 469, 489
SfaNI	GCATC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	485
SphI	GCATGC	1 cut(s)	320
SsiI	CCGC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	131, 283
TaiI	ACGT	1 cut(s)	126
TatI	WGTACW	2 cut(s)	169, 386
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	4 cut(s)	197, 233, 381, 498
Tru9I	TTAA	4 cut(s)	197, 233, 381, 498
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	2 cut(s)	416, 464
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	4 cut(s)	83, 252, 287, 453
Van91I	CCANNNNNTGG	1 cut(s)	36
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.