Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

7168486 .. 7172279

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1057500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTGCTTCGGACGAAACCCCGTCGGCTAAGAGATGGCTTCCTCTCGAAGCTAACCCTGATGTTATGAATCAGTTCCTTTGGGGCCTGGGTCTTCAAGAGGATGAGGCAGAATGCTATGATGTTTACGGGTTGGATGGAGAACTCTTAGAAATGGTTCCGAATCCTGTACTTGCTGTCCTGTTTCTTTATCCTATAACCGCTAAGACTGAAGAAGAGAGAATGATGCAGGCAAATGAAAAACAGGAACCCAAAGGTAATGTTTATTTTATGAAACAAACTGTGGGCAATGCTTGTGGAACAATTGGACTTCTTCATGCTGTTGGAAACATCACTTCAGAGATCAAACTTGTTGAGGATTCGTTCTTGGATAGGTTTTTCAAAAAAACTGCAAGCATGGATCCATTGCAGCGTGCAGCATTCCTTGAAAGTGACACAGAAGTGGAAGTTGCTCATTCTGTAGCAGCCAATGGTGGCGATACAGAGGCGTCCGACAATGCAGACACTCACTTTATTTGCTTTGCATGCGCGGACGGGGAACTTTATGAGCTTGATGGGAGGAAGTCAGGCCCAATCTCTCATGGTCCATCTTCACCAAACAGTCTATTGCAGGATGCAGCTAAAGTCATACAGGGCATGATCCAGAAAAATCCCGACTCCCTCAACTTCAATGTGATTGCAATTTCGAAGAAATCTGGTGGGTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

237

Amino Acids

25.67

Weight (kDa)

4.48

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 215	4.2e-66	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	530
AciI	CCGC	2 cut(s)	201, 530
AclWI	GGATC	3 cut(s)	395, 408, 634
AcuI	CTGAAG	2 cut(s)	231, 321
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	98, 382, 428, 670
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	3 cut(s)	53, 550, 620
AluI	AGCT	3 cut(s)	53, 550, 620
AlwI	GGATC	3 cut(s)	395, 408, 634
AoxI	GGCC	2 cut(s)	85, 568
ApeKI	GCWGC	5 cut(s)	5, 409, 416, 464, 617
Asp700I	GAANNNNTTC	2 cut(s)	74, 156
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	3 cut(s)	85, 569, 584
AsuHPI	GGTGA	1 cut(s)	585
AsuII	TTCGAA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	4 cut(s)	421, 428, 476, 629
BccI	CCATC	4 cut(s)	30, 131, 548, 595
BciT130I	CCWGG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
BlsI	GCNGC	5 cut(s)	7, 411, 418, 466, 619
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	85, 569, 584
BmiI	GGNNCC	4 cut(s)	86, 159, 249, 402
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	216, 604
BpiI	GAAGAC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	88
Bse3DI	GCAATG	2 cut(s)	295, 404
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	109, 142, 619
BseMI	GCAATG	2 cut(s)	295, 404
BseXI	GCAGC	4 cut(s)	421, 428, 476, 629
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	530
BshFI	GGCC	2 cut(s)	87, 570
BsmI	GAATGC	2 cut(s)	119, 419
BsnI	GGCC	2 cut(s)	87, 570
Bsp119I	TTCGAA	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	342, 400, 639
BspACI	CCGC	2 cut(s)	201, 530
BspANI	GGCC	2 cut(s)	87, 570
BspFNI	CGCG	1 cut(s)	530
BspLI	GGNNCC	4 cut(s)	86, 159, 249, 402
BspPI	GGATC	3 cut(s)	395, 408, 634
BspT104I	TTCGAA	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	295, 404
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	342, 400, 639
BssNI	GRCGYC	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	283, 602
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	4 cut(s)	231, 394, 414, 526
BstDEI	CTNAG	3 cut(s)	30, 148, 204
BstF5I	GGATG	3 cut(s)	109, 142, 619
BstFNI	CGCG	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	3 cut(s)	345, 403, 642
BstMBI	GATC	3 cut(s)	342, 400, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	525
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	530
BstV1I	GCAGC	4 cut(s)	421, 428, 476, 629
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	87, 570
BtsCI	GGATG	3 cut(s)	109, 142, 619
Cac8I	GCNNGC	4 cut(s)	231, 394, 414, 526
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	3 cut(s)	85, 569, 584
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	5 cut(s)	317, 397, 525, 581, 637
CviJI	RGCY	9 cut(s)	5, 29, 40, 53, 87, 467, 550, 570, 620
CviKI_1	RGCY	9 cut(s)	5, 29, 40, 53, 87, 467, 550, 570, 620
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	30, 148, 204
DpnI	GATC	3 cut(s)	344, 402, 641
DpnII	GATC	3 cut(s)	342, 400, 639
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	2 cut(s)	231, 321
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	320, 400, 528, 584, 640
FatI	CATG	5 cut(s)	316, 396, 524, 580, 636
Fnu4HI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
FokI	GGATG	3 cut(s)	116, 149, 626
Fsp4HI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
HaeIII	GGCC	2 cut(s)	87, 570
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	320, 400, 528, 584, 640
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	4 cut(s)	70, 163, 359, 656
HphI	GGTGA	1 cut(s)	585
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	4 cut(s)	13, 162, 340, 493
Hpy188III	TCNNGA	4 cut(s)	47, 98, 643, 653
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	283, 602
HpyCH4V	TGCA	9 cut(s)	229, 392, 409, 416, 500, 524, 610, 617, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	525
HpyF3I	CTNAG	3 cut(s)	30, 148, 204
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	5 cut(s)	320, 400, 528, 584, 640
HspAI	GCGC	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	342, 400, 639
Lsp1109I	GCAGC	4 cut(s)	421, 428, 476, 629
LweI	GCATC	2 cut(s)	216, 604
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	344, 402, 641
MboI	GATC	3 cut(s)	342, 400, 639
MboII	GAAGA	6 cut(s)	86, 224, 227, 305, 582, 700
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	2 cut(s)	303, 681
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	3 cut(s)	114, 304, 516
MnlI	CCTC	7 cut(s)	54, 94, 100, 349, 478, 552, 671
MroXI	GAANNNNTTC	2 cut(s)	74, 156
MseI	TTAA	1 cut(s)	709
MslI	CAYNNNNRTG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	119, 419
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	525
NdeII	GATC	3 cut(s)	342, 400, 639
NlaIII	CATG	5 cut(s)	320, 400, 528, 584, 640
NlaIV	GGNNCC	4 cut(s)	86, 159, 249, 402
NmuCI	GTSAC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	686
OliI	CACNNNNGTG	1 cut(s)	440
PaeI	GCATGC	1 cut(s)	528
PctI	GAATGC	2 cut(s)	119, 419
PdmI	GAANNNNTTC	2 cut(s)	74, 156
PfeI	GAWTC	3 cut(s)	70, 163, 359
PkrI	GCNGC	5 cut(s)	7, 411, 418, 466, 619
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	4 cut(s)	86, 159, 249, 402
PspPI	GGNCC	3 cut(s)	85, 569, 584
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	709
SatI	GCNGC	5 cut(s)	6, 410, 417, 465, 618
Sau3AI	GATC	3 cut(s)	342, 400, 639
Sau96I	GGNCC	3 cut(s)	85, 569, 584
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	5 cut(s)	55, 259, 377, 552, 622
SfaNI	GCATC	2 cut(s)	216, 604
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	2 cut(s)	303, 681
SsiI	CCGC	2 cut(s)	201, 530
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	283, 602
TaqI	TCGA	2 cut(s)	48, 686
TasI	AATT	2 cut(s)	303, 681
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	3 cut(s)	70, 163, 359
Tru1I	TTAA	1 cut(s)	709
Tru9I	TTAA	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	5 cut(s)	5, 409, 416, 464, 617
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	4 cut(s)	83, 252, 287, 305
VpaK11BI	GGWCC	1 cut(s)	584
XceI	RCATGY	1 cut(s)	528
XmnI	GAANNNNTTC	2 cut(s)	74, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.