Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

6727143 .. 6731833

Gene Structure 4691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G061500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGGCTTCGGATGAAACTCCATCGGCTAAGAGATGGCTTCCTCTTGAAGCTAACCCTGATGTTATGAACCAGTTCCTTTGGGGTCTGGGTCTTCCAGAGCATGAGGCAGAATGCTGTGACGTTTATGGGTTGGATGGAGAACTCTTAGAAATGGTTCCAAAGCCTGTACTTGCTGTGCTGTTTCTTTATCCTATAACCTCTCAGTCTGAAGAAGAGAGAATGATGCAGGCTAACGAGAAACAGGAACCCAAAGGTAGAGTTTATTTTTTGAAACAAACCGTGGGAAATGCTTGTGGAACTATTGGGCTTCTACATGCTGTAGGAAACATCACTTCCGAGATCAAACTTGTTGAGGAGTCATACTTGGATAGGTTTTTCAAAACTACTGCAACAATGGATCCATCGGAGCGTGCCGCATTCCTTGAAAAGGACAGAGAAATGGAAGTTGCTCATTCAGTAGCAGCTACTGGCGGTGAAACTGAGGCATCAGATAATGTGGACACTCACTTTATCTGCTTCTCATGTGTTGACGGGGAACTTTACGAGCTTGATGGGAGAAAATCAGGTCCAATTTCTCACGGTCCATCATCACCAAACAGCCTATTGCAGGATGCAGCTAAAGTCATACAGGGCATGATCCAAAAAAATCCTGACTCCCTCAACTTCAACGTCATTGCAGTTTCGAAGAAATCGGGGGGCTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

237

Amino Acids

25.83

Weight (kDa)

4.67

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 417, 474
AclWI	GGATC	3 cut(s)	395, 408, 634
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	430, 610
AgsI	TTSAA	5 cut(s)	50, 274, 382, 428, 670
AluBI	AGCT	4 cut(s)	53, 467, 550, 620
AluI	AGCT	4 cut(s)	53, 467, 550, 620
AlwI	GGATC	3 cut(s)	395, 408, 634
AlwNI	CAGNNNCTG	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	464, 617
Asp700I	GAANNNNTTC	2 cut(s)	74, 156
AspS9I	GGNCC	2 cut(s)	569, 584
AsuHPI	GGTGA	2 cut(s)	488, 585
AsuII	TTCGAA	1 cut(s)	686
AvaII	GGWCC	2 cut(s)	569, 584
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	476, 629
BccI	CCATC	6 cut(s)	30, 31, 131, 412, 548, 595
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	4 cut(s)	6, 417, 465, 618
BlsI	GCNGC	4 cut(s)	7, 418, 466, 619
Bme18I	GGWCC	2 cut(s)	569, 584
BmgT120I	GGNCC	2 cut(s)	569, 584
BmiI	GGNNCC	3 cut(s)	159, 249, 402
BmsI	GCATC	3 cut(s)	216, 497, 604
BpiI	GAAGAC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	686
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 610
Bse1I	ACTGG	2 cut(s)	73, 475
Bse3DI	GCAATG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	3 cut(s)	19, 142, 619
BseLI	CCNNNNNNNGG	2 cut(s)	430, 610
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	218, 474
BseNI	ACTGG	2 cut(s)	73, 475
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	476, 629
BslI	CCNNNNNNNGG	2 cut(s)	430, 610
BsmI	GAATGC	2 cut(s)	119, 419
Bsp119I	TTCGAA	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	342, 400, 639
BspACI	CCGC	3 cut(s)	5, 417, 474
BspCNI	CTCAG	2 cut(s)	217, 475
BspLI	GGNNCC	3 cut(s)	159, 249, 402
BspPI	GGATC	3 cut(s)	395, 408, 634
BspT104I	TTCGAA	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	73, 475
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	342, 400, 639
Bst4CI	ACNGT	2 cut(s)	283, 584
Bst6I	CTCTTC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	231, 414
BstDEI	CTNAG	4 cut(s)	30, 148, 204, 483
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	2 cut(s)	428, 608
BstF5I	GGATG	3 cut(s)	19, 142, 619
BstKTI	GATC	3 cut(s)	345, 403, 642
BstMBI	GATC	3 cut(s)	342, 400, 639
BstNSI	RCATGY	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	476, 629
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	19, 142, 619
Cac8I	GCNNGC	2 cut(s)	231, 414
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	569, 584
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	4 cut(s)	104, 317, 525, 637
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	4 cut(s)	30, 148, 204, 483
DpnI	GATC	3 cut(s)	344, 402, 641
DpnII	GATC	3 cut(s)	342, 400, 639
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	569, 584
Eco57I	CTGAAG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	2 cut(s)	428, 608
FaeI	CATG	4 cut(s)	107, 320, 528, 640
FaiI	YATR	9 cut(s)	68, 105, 129, 197, 318, 364, 526, 629, 638
FatI	CATG	4 cut(s)	103, 316, 524, 636
Fnu4HI	GCNGC	4 cut(s)	6, 417, 465, 618
FokI	GGATG	3 cut(s)	26, 149, 626
Fsp4HI	GCNGC	4 cut(s)	6, 417, 465, 618
GluI	GCNGC	4 cut(s)	6, 417, 465, 618
Hin1II	CATG	4 cut(s)	107, 320, 528, 640
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	2 cut(s)	359, 656
HphI	GGTGA	2 cut(s)	488, 585
Hpy166II	GTNNAC	2 cut(s)	502, 532
Hpy188I	TCNGA	5 cut(s)	13, 211, 340, 409, 493
Hpy188III	TCNNGA	3 cut(s)	47, 98, 653
Hpy8I	GTNNAC	2 cut(s)	502, 532
HpyCH4III	ACNGT	2 cut(s)	283, 584
HpyCH4IV	ACGT	2 cut(s)	123, 672
HpyCH4V	TGCA	5 cut(s)	229, 392, 610, 617, 680
HpyF3I	CTNAG	4 cut(s)	30, 148, 204, 483
HpySE526I	ACGT	2 cut(s)	123, 672
Hsp92II	CATG	4 cut(s)	107, 320, 528, 640
Kzo9I	GATC	3 cut(s)	342, 400, 639
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	2 cut(s)	476, 629
LweI	GCATC	3 cut(s)	216, 497, 604
MaeII	ACGT	2 cut(s)	123, 672
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	3 cut(s)	344, 402, 641
MboI	GATC	3 cut(s)	342, 400, 639
MboII	GAAGA	4 cut(s)	86, 224, 227, 700
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	368, 650
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	6 cut(s)	54, 100, 211, 349, 478, 671
MroXI	GAANNNNTTC	2 cut(s)	74, 156
MseI	TTAA	1 cut(s)	709
Mva1269I	GAATGC	2 cut(s)	119, 419
NdeII	GATC	3 cut(s)	342, 400, 639
NlaIII	CATG	4 cut(s)	107, 320, 528, 640
NlaIV	GGNNCC	3 cut(s)	159, 249, 402
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	320
NspV	TTCGAA	1 cut(s)	686
PctI	GAATGC	2 cut(s)	119, 419
PdmI	GAANNNNTTC	2 cut(s)	74, 156
PkrI	GCNGC	4 cut(s)	7, 418, 466, 619
PleI	GAGTC	2 cut(s)	367, 650
PpsI	GAGTC	2 cut(s)	367, 650
PspN4I	GGNNCC	3 cut(s)	159, 249, 402
PspPI	GGNCC	2 cut(s)	569, 584
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	709
SatI	GCNGC	4 cut(s)	6, 417, 465, 618
Sau3AI	GATC	3 cut(s)	342, 400, 639
Sau96I	GGNCC	2 cut(s)	569, 584
SchI	GAGTC	2 cut(s)	368, 650
SfaNI	GCATC	3 cut(s)	216, 497, 604
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	686
SinI	GGWCC	2 cut(s)	569, 584
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	3 cut(s)	5, 417, 474
TaaI	ACNGT	2 cut(s)	283, 584
TaiI	ACGT	2 cut(s)	126, 675
TaqI	TCGA	1 cut(s)	686
TasI	AATT	1 cut(s)	573
TatI	WGTACW	1 cut(s)	169
TauI	GCSGC	2 cut(s)	8, 419
Tru1I	TTAA	1 cut(s)	709
Tru9I	TTAA	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	464, 617
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	30, 83
VpaK11BI	GGWCC	2 cut(s)	569, 584
XagI	CCTNNNNNAGG	2 cut(s)	428, 608
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	2 cut(s)	74, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.