Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

31213143 .. 31213851

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCTGCTTCGTACAGAACCCAGTCCGCTAAGAGATGGCTTCCTCTTGAAGCTAATCCAGATGTTATGAACCAGTTCCTTTGGGGATTGGATGTTCAAGAGGGTGAGGCAGAATGCGATGACGTTTACAGTTTGTATGGAGAACTGTTAGAAATGGTTCCAACCTGTACTTGCTGTGCTGTTTCTTATCCCTTAACCCCTACGGTTTTGTATCTCCCTTCAGTTTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

77

Amino Acids

8.72

Weight (kDa)

4.05

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	13 - 55	5.8e-09	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	14, 169
AgsI	TTSAA	2 cut(s)	50, 98
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	2 cut(s)	74, 156
AsuHPI	GGTGA	1 cut(s)	116
BccI	CCATC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	22, 73
BseGI	GGATG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	22, 73
BsmI	GAATGC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	22, 73
Bst4CI	ACNGT	3 cut(s)	131, 147, 205
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	13, 168
CviJI	RGCY	3 cut(s)	5, 40, 53
CviKI_1	RGCY	3 cut(s)	5, 40, 53
CviQI	GTAC	2 cut(s)	13, 168
DdeI	CTNAG	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	204
FaiI	YATR	2 cut(s)	68, 138
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	3 cut(s)	47, 59, 98
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	3 cut(s)	131, 147, 205
HpyCH4IV	ACGT	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	123
LpnPI	CCDG	4 cut(s)	35, 72, 86, 178
MaeII	ACGT	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	54, 94, 100
MroXI	GAANNNNTTC	2 cut(s)	74, 156
MseI	TTAA	2 cut(s)	194, 232
Mva1269I	GAATGC	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	74, 156
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	159
RsaI	GTAC	2 cut(s)	14, 169
RsaNI	GTAC	2 cut(s)	13, 168
SaqAI	TTAA	2 cut(s)	194, 232
SatI	GCNGC	1 cut(s)	6
SetI	ASST	3 cut(s)	55, 126, 167
SgeI	CNNG	7 cut(s)	34, 59, 71, 85, 110, 177, 183
SsiI	CCGC	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	131, 147, 205
TaiI	ACGT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	194, 232
Tru9I	TTAA	2 cut(s)	194, 232
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	83
XmnI	GAANNNNTTC	2 cut(s)	74, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.