Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Reverse (-)

18070381 .. 18074903

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATAACCAAATTGAATTTCAGAAGGGAACTTTTAATATATGTTTCTCTTATTTTCTACATGCAGTTCCTTTGGGGATTGGGTCTTCAAGAGGATGAGGCAGAATGCTATGACGTTTACGGTTTGGATGGAGAACTCTTAGAAATGGTTCCAAAGCCTGTACTTGCTGTGCTGTTTCTTTATCCTTTAACCCCTAAGAGTGAAGAAGAGAGAATGATGCAGTTAAATGAAAAACAGGAAACCAAAGATAATGTTTATTTTATGAAACAAACTGTGGGCAATGCTTGTGGAACTATTGGACTTCTTCATGCTATTGGAAACATCACTTCAGAGATCAAACTTGTTGACGGGTCATTCTTGGATAGATTTTTTAAAAGTACTGCAAGCATGGATCCAATGGAGCGTGCAGCATTCCTTGAAAATGACAATGAAATGGAAGTTGCTCATTCAGTAGCAGCCACTGCTGGTGACACAGAGGCTTCAGATGATGTTGACACTCACTTTATCTGCTATGCATGTGTGGATGGGGAACTATATGAGCTTGATGGGAGGAAGTATGGTCCAATCTCTCACGGCCCGTCTTCACCAACCACTCTATTACAGGATGCAGCTAAAGTCATACAGGGCATGATCCAGAAAAATCCCGAATCTCTCAACTTCAACGTCATTGCCATTTCGAAGAAATCGGGGGGATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

233

Amino Acids

25.96

Weight (kDa)

4.57

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	21 - 212	1.3e-60	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	386, 399, 625
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	312, 465
AfaI	GTAC	2 cut(s)	162, 379
AgsI	TTSAA	4 cut(s)	16, 89, 419, 661
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	541, 611
AluI	AGCT	2 cut(s)	541, 611
AlwI	GGATC	3 cut(s)	386, 399, 625
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	3 cut(s)	407, 455, 608
ApoI	RAATTY	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	560, 575
AsuHPI	GGTGA	2 cut(s)	479, 576
AsuII	TTCGAA	1 cut(s)	677
AvaII	GGWCC	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	391
BbsI	GAAGAC	2 cut(s)	77, 573
BbvI	GCAGC	3 cut(s)	419, 467, 620
BccI	CCATC	3 cut(s)	122, 518, 539
BceAI	ACGGC	1 cut(s)	589
BisI	GCNGC	3 cut(s)	408, 456, 609
BlsI	GCNGC	3 cut(s)	409, 457, 610
BmcAI	AGTACT	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	2 cut(s)	560, 575
BmiI	GGNNCC	2 cut(s)	150, 393
BmsI	GCATC	2 cut(s)	207, 595
BpiI	GAAGAC	2 cut(s)	77, 573
Bpu14I	TTCGAA	1 cut(s)	677
Bse3DI	GCAATG	2 cut(s)	286, 666
BseGI	GGATG	4 cut(s)	100, 133, 529, 610
BseMI	GCAATG	2 cut(s)	286, 666
BseXI	GCAGC	3 cut(s)	419, 467, 620
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	576
BsmI	GAATGC	2 cut(s)	110, 410
BsnI	GGCC	1 cut(s)	576
Bsp119I	TTCGAA	1 cut(s)	677
Bsp143I	GATC	3 cut(s)	333, 391, 630
BspANI	GGCC	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	150, 393
BspPI	GGATC	3 cut(s)	386, 399, 625
BspT104I	TTCGAA	1 cut(s)	677
BsrDI	GCAATG	2 cut(s)	286, 666
BssMI	GATC	3 cut(s)	333, 391, 630
Bst4CI	ACNGT	2 cut(s)	122, 274
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	385, 405
BstDEI	CTNAG	2 cut(s)	139, 195
BstF5I	GGATG	4 cut(s)	100, 133, 529, 610
BstKTI	GATC	3 cut(s)	336, 394, 633
BstMBI	GATC	3 cut(s)	333, 391, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	2 cut(s)	64, 519
BstV1I	GCAGC	3 cut(s)	419, 467, 620
BstV2I	GAAGAC	2 cut(s)	77, 573
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	576
BtsCI	GGATG	4 cut(s)	100, 133, 529, 610
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	385, 405
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	560, 575
Csp6I	GTAC	2 cut(s)	161, 378
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	5 cut(s)	61, 308, 388, 516, 628
CviJI	RGCY	6 cut(s)	157, 458, 479, 541, 576, 611
CviKI_1	RGCY	6 cut(s)	157, 458, 479, 541, 576, 611
CviQI	GTAC	2 cut(s)	161, 378
DdeI	CTNAG	2 cut(s)	139, 195
DpnI	GATC	3 cut(s)	335, 393, 632
DpnII	GATC	3 cut(s)	333, 391, 630
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	2 cut(s)	312, 465
EcoT22I	ATGCAT	1 cut(s)	517
FaeI	CATG	5 cut(s)	64, 311, 391, 519, 631
FatI	CATG	5 cut(s)	60, 307, 387, 515, 627
Fnu4HI	GCNGC	3 cut(s)	408, 456, 609
FokI	GGATG	4 cut(s)	107, 140, 536, 617
Fsp4HI	GCNGC	3 cut(s)	408, 456, 609
GluI	GCNGC	3 cut(s)	408, 456, 609
HaeIII	GGCC	1 cut(s)	576
Hin1II	CATG	5 cut(s)	64, 311, 391, 519, 631
HincII	GTYRAC	2 cut(s)	346, 493
HindII	GTYRAC	2 cut(s)	346, 493
HinfI	GANTC	1 cut(s)	647
HphI	GGTGA	2 cut(s)	479, 576
Hpy166II	GTNNAC	3 cut(s)	118, 346, 493
Hpy188I	TCNGA	3 cut(s)	23, 331, 484
Hpy188III	TCNNGA	3 cut(s)	89, 634, 644
Hpy8I	GTNNAC	3 cut(s)	118, 346, 493
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	122, 274
HpyCH4IV	ACGT	2 cut(s)	114, 663
HpyCH4V	TGCA	6 cut(s)	64, 220, 383, 407, 515, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	139, 195
HpySE526I	ACGT	2 cut(s)	114, 663
Hsp92II	CATG	5 cut(s)	64, 311, 391, 519, 631
Kzo9I	GATC	3 cut(s)	333, 391, 630
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	6 cut(s)	171, 221, 450, 587, 608, 647
Lsp1109I	GCAGC	3 cut(s)	419, 467, 620
LweI	GCATC	2 cut(s)	207, 595
MaeII	ACGT	2 cut(s)	114, 663
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	3 cut(s)	335, 393, 632
MboI	GATC	3 cut(s)	333, 391, 630
MboII	GAAGA	6 cut(s)	77, 215, 218, 296, 573, 691
MflI	RGATCY	1 cut(s)	391
MluCI	AATT	2 cut(s)	11, 16
MnlI	CCTC	4 cut(s)	85, 91, 469, 543
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	5 cut(s)	35, 188, 224, 372, 700
Mva1269I	GAATGC	2 cut(s)	110, 410
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	3 cut(s)	333, 391, 630
NlaIII	CATG	5 cut(s)	64, 311, 391, 519, 631
NlaIV	GGNNCC	2 cut(s)	150, 393
NmuCI	GTSAC	1 cut(s)	467
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	2 cut(s)	64, 519
NspV	TTCGAA	1 cut(s)	677
PctI	GAATGC	2 cut(s)	110, 410
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	409, 457, 610
PspN4I	GGNNCC	2 cut(s)	150, 393
PspPI	GGNCC	2 cut(s)	560, 575
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	2 cut(s)	162, 379
RsaNI	GTAC	2 cut(s)	161, 378
SaqAI	TTAA	5 cut(s)	35, 188, 224, 372, 700
SatI	GCNGC	3 cut(s)	408, 456, 609
Sau3AI	GATC	3 cut(s)	333, 391, 630
Sau96I	GGNCC	2 cut(s)	560, 575
ScaI	AGTACT	1 cut(s)	379
SetI	ASST	4 cut(s)	117, 543, 613, 666
SfaNI	GCATC	2 cut(s)	207, 595
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	560
Sse9I	AATT	2 cut(s)	11, 16
TaaI	ACNGT	2 cut(s)	122, 274
TaiI	ACGT	2 cut(s)	117, 666
TaqI	TCGA	1 cut(s)	677
TasI	AATT	2 cut(s)	11, 16
TatI	WGTACW	2 cut(s)	160, 377
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	5 cut(s)	35, 188, 224, 372, 700
Tru9I	TTAA	5 cut(s)	35, 188, 224, 372, 700
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	3 cut(s)	407, 455, 608
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	4 cut(s)	243, 278, 296, 444
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	2 cut(s)	64, 519
XmnI	GAANNNNTTC	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.