Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Reverse (-)

19940168 .. 19945145

Gene Structure 4978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGCCTTGAAACAGCGTCACTCGCACTAGTTGAAAGCAGATGCCCACTACCCAAAACCTATAAATATATAAACCACAGTAACAAAAGAAGTCTCAGAATTCCCTCAACACACGAAAAGGAAAAGGCAGCAGAACAATATCAAATCCCTGAGATGGCTTCTCCCTACAGAACCCAGGCCGCTAAGAGATGGCTTCCTCTTGAAGCTAATCCCGATGTTATGAACCAGTTCCTTTGGGGATTGGGTCTTCAAGAGGATGAGGCAGAATGCTATGACGTTTACGGTTTGGATGGAGAACTCTTAGAAATGGTTCCAAAGCCTGTACTTGCTGTGCTGTTTCTTTATCCTTTAACCCCCAAGACTGAAGAAGAGAGAATGATGCAGTTAAATGAAAAACAGGAAACCAAAGATAATGTTTATTTTATGAAACAAACCGTGGGCAATGCTTGTGGAACTATTGGACTTCTGCATGCTGTTGGAAACATCACTTCAGAGATCAAACTTGTTGACGGGTCATTCTTGGATAGATTTTTCAAAAGTACTGCAAGCATGGATCCATTGGAGCGTGCAGCATTCCTTGAAAATGACAATGAAATGGAAGTTGCTCATTCAGTAGCAGCTACTGCTGGTGACACAGAGGTTATATATTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

218

Amino Acids

24.62

Weight (kDa)

4.9

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	64 - 213	7.5e-46	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	548, 561
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	2 cut(s)	384, 474
AfaI	GTAC	2 cut(s)	324, 541
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	6 cut(s)	11, 35, 203, 251, 535, 581
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	206, 620
AluI	AGCT	2 cut(s)	206, 620
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	548, 561
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	4, 177
ApeKI	GCWGC	3 cut(s)	128, 569, 617
ApoI	RAATTY	1 cut(s)	99
Asp700I	GAANNNNTTC	2 cut(s)	227, 309
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	140, 581, 629
BccI	CCATC	3 cut(s)	148, 183, 284
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	98
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	4 cut(s)	129, 180, 570, 618
BlsI	GCNGC	4 cut(s)	130, 181, 571, 619
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	312, 555
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	32, 369
BpiI	GAAGAC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	174, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	174, 435
BseGI	GGATG	2 cut(s)	262, 295
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	109, 141
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	140, 581, 629
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	2 cut(s)	6, 179
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	2 cut(s)	272, 572
BsnI	GGCC	2 cut(s)	6, 179
Bsp143I	GATC	2 cut(s)	495, 553
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	2 cut(s)	6, 179
BspCNI	CTCAG	2 cut(s)	108, 142
BspLI	GGNNCC	2 cut(s)	312, 555
BspPI	GGATC	2 cut(s)	548, 561
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	174, 435
BssMI	GATC	2 cut(s)	495, 553
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	80, 284, 436
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	471, 547, 567
BstDEI	CTNAG	4 cut(s)	95, 150, 183, 301
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	262, 295
BstKTI	GATC	2 cut(s)	498, 556
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	495, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 623
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	140, 581, 629
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	6, 179
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	262, 295
Cac8I	GCNNGC	3 cut(s)	471, 547, 567
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	323, 540
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	2 cut(s)	470, 550
CviJI	RGCY	7 cut(s)	6, 158, 179, 193, 206, 319, 620
CviKI_1	RGCY	7 cut(s)	6, 158, 179, 193, 206, 319, 620
CviQI	GTAC	2 cut(s)	323, 540
DdeI	CTNAG	4 cut(s)	95, 150, 183, 301
DpnI	GATC	2 cut(s)	497, 555
DpnII	GATC	2 cut(s)	495, 553
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco57I	CTGAAG	2 cut(s)	384, 474
EcoRI	GAATTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	473, 553
FatI	CATG	2 cut(s)	469, 549
Fnu4HI	GCNGC	4 cut(s)	129, 180, 570, 618
FokI	GGATG	2 cut(s)	269, 302
Fsp4HI	GCNGC	4 cut(s)	129, 180, 570, 618
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	4 cut(s)	129, 180, 570, 618
HaeIII	GGCC	2 cut(s)	6, 179
HgaI	GACGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	473, 553
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	2 cut(s)	280, 508
Hpy188I	TCNGA	2 cut(s)	98, 493
Hpy188III	TCNNGA	3 cut(s)	200, 212, 251
Hpy8I	GTNNAC	2 cut(s)	280, 508
HpyCH4III	ACNGT	3 cut(s)	80, 284, 436
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	382, 469, 545, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 623
HpyF3I	CTNAG	4 cut(s)	95, 150, 183, 301
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	473, 553
Kzo9I	GATC	2 cut(s)	495, 553
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	7 cut(s)	161, 162, 188, 239, 333, 383, 612
Lsp1109I	GCAGC	3 cut(s)	140, 581, 629
LweI	GCATC	2 cut(s)	32, 369
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	18, 80, 629
MalI	GATC	2 cut(s)	497, 555
MboI	GATC	2 cut(s)	495, 553
MboII	GAAGA	3 cut(s)	239, 377, 380
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	5 cut(s)	115, 207, 247, 253, 631
MroXI	GAANNNNTTC	2 cut(s)	227, 309
MseI	TTAA	3 cut(s)	350, 386, 651
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	2 cut(s)	272, 572
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	23, 623
NdeII	GATC	2 cut(s)	495, 553
NlaIII	CATG	2 cut(s)	473, 553
NlaIV	GGNNCC	2 cut(s)	312, 555
NmuCI	GTSAC	2 cut(s)	18, 629
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PctI	GAATGC	2 cut(s)	272, 572
PdmI	GAANNNNTTC	2 cut(s)	227, 309
PkrI	GCNGC	4 cut(s)	130, 181, 571, 619
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	312, 555
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	2 cut(s)	324, 541
RsaNI	GTAC	2 cut(s)	323, 540
SaqAI	TTAA	3 cut(s)	350, 386, 651
SatI	GCNGC	4 cut(s)	129, 180, 570, 618
Sau3AI	GATC	2 cut(s)	495, 553
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	62, 208, 279, 622, 642
SfaNI	GCATC	2 cut(s)	32, 369
SfcI	CTRYAG	1 cut(s)	166
SpeI	ACTAGT	1 cut(s)	28
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	80, 284, 436
TaiI	ACGT	1 cut(s)	279
TasI	AATT	1 cut(s)	99
TatI	WGTACW	2 cut(s)	322, 539
TauI	GCSGC	1 cut(s)	182
Tru1I	TTAA	3 cut(s)	350, 386, 651
Tru9I	TTAA	3 cut(s)	350, 386, 651
TseFI	GTSAC	2 cut(s)	18, 629
TseI	GCWGC	3 cut(s)	128, 569, 617
Tsp45I	GTSAC	2 cut(s)	18, 629
TspDTI	ATGAA	4 cut(s)	236, 405, 440, 606
XapI	RAATTY	1 cut(s)	99
XceI	RCATGY	1 cut(s)	473
XmnI	GAANNNNTTC	2 cut(s)	227, 309
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.