Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009072

Physical Location & Seq

Genomic Coordinates Forward (+)

24998267 .. 25000011

Gene Structure 1745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGAATTATATGGGAAATACCTCAACGCACGAAAAGGAAAAGGCACCAGAATATCAAATCAAATCCGAGAAGAAAGCAAATGGCTGCTTCGTACAGAACCCAGTCTGCTAAGAGATGGCTTCCTCTTGAAGCTAATCCAGATGTTATGAACCAGTTCCTTTGGGGATTGGGTGTTCAAGAGGATGAGGCAGAATGCCATGACGTTTACAGTTTGTATGGAGAACTGTTAGAAATGCTCCAAAGCCTGTACTTGTTGTGTTGTTTCTTATCCTTTAACCCCTACGGTTTTGTATCTCCCTCCAGTTTATTATTAATTCTTAACTTCGTGGATGGCTATCAATATTTTGTTACACATTTTGAAAGTATACTTGTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0003824 GO:0004300 GO:0004843 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006464 GO:0006508 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016579 GO:0016787 GO:0016829 GO:0016835 GO:0016836 GO:0019395 GO:0019538 GO:0019752 GO:0019783 GO:0030258 GO:0032787 GO:0034440 GO:0036211 GO:0036459 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0055114 GO:0070011 GO:0070646 GO:0070647 GO:0071704 GO:0072329 GO:0097159 GO:0101005 GO:0140096 GO:1901363 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C12

Protein Analysis

126

Amino Acids

14.77

Weight (kDa)

6.82

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C12	PF01088	40 - 81	2.7e-09	Ubiquitin carboxyl-terminal hydrolase, family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17510
fragaria_vesca	FvH4_5g19870
malus_domestica	MD04G1057500.v1.1 MD06G1051100.v1.1
prunus_persica	Prupe.5G061500_v2.0.a1
pyrus_communis	pycom06g04330
rosa_chinensis	RchiOBHm_Chr7g0204661 RchiOBHm_Chr7g0214021
rosa_laevigata	RLG00000003440
rosa_multiflora	Rmu_sc0007104.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245580 Rroxscaffold_3G00252890 Rroxscaffold_4G00300770
rosa_rugosa	Rorug07G0085400 Rorug07G0145300
rosa_samantha	Rh7AG215300 Rh7BG212500 Rh7BG272200 Rh7CG228400 Rh7CG297700 Rh7DG223000
rosa_wichuraiana	Rw7G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	367
AfaI	GTAC	2 cut(s)	95, 251
AgsI	TTSAA	3 cut(s)	131, 179, 362
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	86
AseI	ATTAAT	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	111, 326
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	286
BsaBI	GATNNNNATC	1 cut(s)	336
Bse1I	ACTGG	3 cut(s)	103, 154, 303
Bse8I	GATNNNNATC	1 cut(s)	336
BseGI	GGATG	2 cut(s)	190, 337
BseJI	GATNNNNATC	1 cut(s)	336
BseNI	ACTGG	3 cut(s)	103, 154, 303
BseXI	GCAGC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	103, 154, 303
BssNAI	GTATAC	1 cut(s)	368
Bst1107I	GTATAC	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	212, 228, 287
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	190, 337
BstV1I	GCAGC	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	190, 337
Csp6I	GTAC	2 cut(s)	94, 250
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	5 cut(s)	86, 121, 134, 246, 336
CviKI_1	RGCY	5 cut(s)	86, 121, 134, 246, 336
CviQI	GTAC	2 cut(s)	94, 250
DdeI	CTNAG	1 cut(s)	111
FaeI	CATG	1 cut(s)	203
FaiI	YATR	6 cut(s)	11, 13, 149, 201, 219, 368
FatI	CATG	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	197, 344
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	286
Hin1II	CATG	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	208, 368
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	4 cut(s)	128, 140, 179, 378
Hpy8I	GTNNAC	2 cut(s)	208, 368
HpyCH4III	ACNGT	3 cut(s)	212, 228, 287
HpyCH4IV	ACGT	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	62, 116, 153, 167, 260, 316
Lsp1109I	GCAGC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	349
MboII	GAAGA	1 cut(s)	84
MluCI	AATT	2 cut(s)	6, 315
MnlI	CCTC	5 cut(s)	33, 135, 175, 181, 310
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	3 cut(s)	276, 314, 321
Mva1269I	GAATGC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	47
PctI	GAATGC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	95, 251
RsaNI	GTAC	2 cut(s)	94, 250
SaqAI	TTAA	3 cut(s)	276, 314, 321
SatI	GCNGC	1 cut(s)	87
SetI	ASST	3 cut(s)	25, 136, 207
Sse9I	AATT	2 cut(s)	6, 315
SspI	AATATT	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	212, 228, 287
TaiI	ACGT	1 cut(s)	207
TasI	AATT	2 cut(s)	6, 315
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	276, 314, 321
Tru9I	TTAA	3 cut(s)	276, 314, 321
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	164
VspI	ATTAAT	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.