AT4G17540

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005315
Physical Location & Seq
Forward (+)
9775841 .. 9777835
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17540.1

Sequence Viewer

Length: 885 bp
ATGGAGGAAATTGGCGGCGGAAGCATCAGCAGCAATGGTGTGGTGATGAAGAAGGAAGGATTAGGGTTTTCTAAAAGGGGAATTAAAATAGAGAATCCTTTTGCTTTTAAGGCTCTTCAAGTCTTCACTGGATTTGGCGTTGGTTGTGGAGTTGGTATTGGTAGTGGTGCACCTTTGAATCTCGGTAGTATTCCAATGGTGGGGGAAATTATGAATTCAGCTAGAGGAGCAACCAATGTATTTTCGGGTGCCACACACCACGTGAATGGCGCTTTGCGGAAGCTTGGAGCGAGGAACATTCAAGCAGGTGTTGGCTGTGGAGTTGGCTTTGGTCATGGTTTCGGAGTTGGCATTGCAGTGAAACCAAGTGCCATACACAAACTTCAAGCTTCTATTATGGGAACTGCATCCAACTTGATGACTAAACTTGGAAGAACGAGTGAGACCACCTCAAGTCAAACTGAGACTGAAGACCAGGTGTCTCAATCTGTAACCGGTCACAAGAAACATGTGGACACAAAAGCATCTTTGAAGAACAGTGGTTCCTCTACTAATTCAAGAACGTTTGGTACTCGAACTGAGAAAGTGATCAACAGTTTTCTCGACAACCCTATTCTGAAACACCAGGACACAACTGCGGAAGAACGACAGGTCACACAACTAGAATCGGAGAGCTTAATGCTTCAAATGGTGCTGAAACATCAGAAACTCATTGATGAAGTAATGGAAGAGAACGAAAAGCTTCGAAGGATAATCATAGAAGATCTCAAAGTTTCACCCGAAAAACTGAAATTAGTTTCCTCTTACAATTACGAAACACCACCATGCAAAGATTGCTTTGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

31.75

Weight (kDa)

9.57

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 248
AciI CCGC 4 cut(s) 15, 18, 277, 638
AclI AACGTT 1 cut(s) 563
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 489
AcvI CACGTG 1 cut(s) 262
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 508
AgeI ACCGGT 1 cut(s) 494
AgsI TTSAA 7 cut(s) 119, 178, 302, 386, 532, 558, 686
AhdI GACNNNNNGTC 1 cut(s) 478
AjnI CCWGG 2 cut(s) 474, 624
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
AluBI AGCT 6 cut(s) 221, 283, 389, 675, 742, 880
AluI AGCT 6 cut(s) 221, 283, 389, 675, 742, 880
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 3 cut(s) 437, 458, 486
Alw44I GTGCAC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 214
AsiGI ACCGGT 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 55, 768
AsuII TTCGAA 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 248
BbrPI CACGTG 1 cut(s) 262
BbsI GAAGAC 2 cut(s) 115, 477
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 476, 626
BclI TGATCA 1 cut(s) 588
BcoDI GTCTC 3 cut(s) 437, 458, 486
BfaI CTAG 2 cut(s) 222, 662
BfoI RGCGCY 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 296
BglII AGATCT 1 cut(s) 763
BisI GCNGC 2 cut(s) 16, 31
BlsI GCNGC 2 cut(s) 17, 32
Bme1390I CCNGG 2 cut(s) 476, 626
BmeRI GACNNNNNGTC 1 cut(s) 478
BmiI GGNNCC 2 cut(s) 250, 544
BmrFI CCNGG 2 cut(s) 476, 626
BmsI GCATC 3 cut(s) 33, 416, 533
BpiI GAAGAC 2 cut(s) 115, 477
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bpu14I TTCGAA 1 cut(s) 745
BpuEI CTTGAG 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 437
BsaWI WCCGGW 1 cut(s) 494
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 40, 351
BseBI CCWGG 2 cut(s) 476, 626
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 2 cut(s) 40, 351
BseMII CTCAG 2 cut(s) 453, 570
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 248
BshTI ACCGGT 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 3 cut(s) 437, 458, 486
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 588, 763
BspACI CCGC 4 cut(s) 15, 18, 277, 638
BspCNI CTCAG 2 cut(s) 454, 571
BspLI GGNNCC 2 cut(s) 250, 544
BspMI ACCTGC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 745
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 437
BsrDI GCAATG 2 cut(s) 40, 351
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 494
BssMI GATC 2 cut(s) 588, 763
Bst2UI CCWGG 2 cut(s) 476, 626
Bst4CI ACNGT 2 cut(s) 539, 596
Bst6I CTCTTC 2 cut(s) 120, 723
BstAPI GCANNNNNTGC 1 cut(s) 834
BstBAI YACGTR 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 745
BstDEI CTNAG 2 cut(s) 462, 579
BstF5I GGATG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 2 cut(s) 591, 766
BstMAI GTCTC 3 cut(s) 437, 458, 486
BstMBI GATC 2 cut(s) 588, 763
BstMWI GCNNNNNNNGC 5 cut(s) 21, 30, 110, 227, 834
BstNI CCWGG 2 cut(s) 476, 626
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 474, 624
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 2 cut(s) 115, 477
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 1 cut(s) 763
BtsCI GGATG 1 cut(s) 407
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 3 cut(s) 126, 363, 544
BveI ACCTGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 1 cut(s) 494
CsiI ACCWGGT 1 cut(s) 474
Csp6I GTAC 1 cut(s) 570
CspAI ACCGGT 1 cut(s) 494
CviAII CATG 3 cut(s) 335, 509, 825
CviJI RGCY 9 cut(s) 113, 221, 283, 315, 327, 389, 675, 742, 880
CviKI_1 RGCY 9 cut(s) 113, 221, 283, 315, 327, 389, 675, 742, 880
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 2 cut(s) 462, 579
DpnI GATC 2 cut(s) 590, 765
DpnII GATC 2 cut(s) 588, 763
DraIII CACNNNGTG 1 cut(s) 262
DriI GACNNNNNGTC 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 120, 723
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 2 cut(s) 120, 723
EciI GGCGGA 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 489
Eco72I CACGTG 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 474, 624
FaeI CATG 3 cut(s) 338, 512, 828
FaiI YATR 7 cut(s) 212, 336, 374, 398, 510, 758, 826
FatI CATG 3 cut(s) 334, 508, 824
FbaI TGATCA 1 cut(s) 588
Fnu4HI GCNGC 2 cut(s) 16, 31
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 16, 31
FspBI CTAG 2 cut(s) 222, 662
GlaI GCGC 1 cut(s) 271
GluI GCNGC 2 cut(s) 16, 31
HaeII RGCGCY 1 cut(s) 273
HapII CCGG 1 cut(s) 495
HhaI GCGC 1 cut(s) 272
Hin1II CATG 3 cut(s) 338, 512, 828
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HindIII AAGCTT 3 cut(s) 281, 387, 740
HinfI GANTC 3 cut(s) 94, 178, 665
HpaII CCGG 1 cut(s) 495
HphI GGTGA 2 cut(s) 55, 768
Hpy166II GTNNAC 2 cut(s) 170, 514
Hpy188I TCNGA 4 cut(s) 344, 618, 670, 705
Hpy188III TCNNGA 2 cut(s) 558, 602
Hpy8I GTNNAC 2 cut(s) 170, 514
HpyAV CCTTC 3 cut(s) 46, 50, 741
HpyCH4III ACNGT 2 cut(s) 539, 596
HpyCH4IV ACGT 2 cut(s) 261, 563
HpyCH4V TGCA 4 cut(s) 170, 356, 407, 828
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 30, 110, 227, 834
HpyF3I CTNAG 2 cut(s) 462, 579
HpySE526I ACGT 2 cut(s) 261, 563
Hsp92II CATG 3 cut(s) 338, 512, 828
HspAI GCGC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 2 cut(s) 588, 763
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 227, 287
LpnPI CCDG 8 cut(s) 114, 291, 461, 488, 508, 611, 635, 638
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 3 cut(s) 33, 416, 533
MabI ACCWGGT 1 cut(s) 474
MaeI CTAG 2 cut(s) 222, 662
MaeII ACGT 2 cut(s) 261, 563
MaeIII GTNAC 3 cut(s) 490, 497, 652
MalI GATC 2 cut(s) 590, 765
MboI GATC 2 cut(s) 588, 763
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 7 cut(s) 9, 81, 207, 214, 553, 791, 808
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 6 cut(s) 218, 285, 460, 556, 811, 863
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 3 cut(s) 84, 108, 677
MslI CAYNNNNRTG 3 cut(s) 264, 356, 823
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 2 cut(s) 476, 626
MvaI CCWGG 2 cut(s) 476, 626
MwoI GCNNNNNNNGC 5 cut(s) 21, 30, 110, 227, 834
NdeII GATC 2 cut(s) 588, 763
NlaIII CATG 3 cut(s) 338, 512, 828
NlaIV GGNNCC 2 cut(s) 250, 544
NmuCI GTSAC 2 cut(s) 497, 652
NspI RCATGY 1 cut(s) 512
NspV TTCGAA 1 cut(s) 745
PaqCI CACCTGC 1 cut(s) 296
PciI ACATGT 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 3 cut(s) 94, 178, 665
PinAI ACCGGT 1 cut(s) 494
PkrI GCNGC 2 cut(s) 17, 32
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 262
PscI ACATGT 1 cut(s) 508
Psp1406I AACGTT 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 474, 624
PspCI CACGTG 1 cut(s) 262
PspGI CCWGG 2 cut(s) 474, 624
PspN4I GGNNCC 2 cut(s) 250, 544
PsrI GAACNNNNNNTAC 2 cut(s) 553, 585
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 3 cut(s) 264, 356, 823
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 84, 108, 677
SatI GCNGC 2 cut(s) 16, 31
Sau3AI GATC 2 cut(s) 588, 763
ScrFI CCNGG 2 cut(s) 476, 626
SduI GDGCHC 1 cut(s) 172
SexAI ACCWGGT 1 cut(s) 474
SfaNI GCATC 3 cut(s) 33, 416, 533
SfuI TTCGAA 1 cut(s) 745
SmiMI CAYNNNNRTG 3 cut(s) 264, 356, 823
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
Sse9I AATT 7 cut(s) 9, 81, 207, 214, 553, 791, 808
SsiI CCGC 4 cut(s) 15, 18, 277, 638
SspMI CTAG 2 cut(s) 222, 662
StyD4I CCNGG 2 cut(s) 474, 624
TaaI ACNGT 2 cut(s) 539, 596
TaiI ACGT 2 cut(s) 264, 566
TaqI TCGA 3 cut(s) 574, 603, 745
TasI AATT 7 cut(s) 9, 81, 207, 214, 553, 791, 808
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 3 cut(s) 94, 178, 665
Tru1I TTAA 3 cut(s) 84, 108, 677
Tru9I TTAA 3 cut(s) 84, 108, 677
TscAI CASTG 3 cut(s) 133, 363, 544
TseFI GTSAC 2 cut(s) 497, 652
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 2 cut(s) 497, 652
TspDTI ATGAA 3 cut(s) 62, 227, 732
TspRI CASTG 3 cut(s) 133, 363, 544
VneI GTGCAC 1 cut(s) 168
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 512
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 2 cut(s) 222, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.