Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005315

Physical Location & Seq

Genomic Coordinates Forward (+)

20708814 .. 20713862

Gene Structure 5049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAGGGAAGCAGTAAGAGTGGCACGGTGGTGGTGGTGGCGGCCAATGAGAGAAAGCCAAGTGGCGGAATCCGGATTGGGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATCGGCTGCGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGCGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGACGCCTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTTTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGTACAAACAATGACAAAAATGATGACAAAATTTGGAATTGCTCCCAATTCACCAATCCTTCAAGGTGCCATTCCAAGTTCATTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCAAAATTCAGTCGGAAATAGCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTCGATACACCTTTTGGCAGTCGAACAGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAAGTGGCTGGACGCTTGAGGTCGGAGAATAAAATCCTTCAAATGGTAGTAACTATTATTGACTTGTGGTTTCCAATTGATTCTGTTCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

27.82

Weight (kDa)

9.45

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17540
fragaria_vesca	FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140
malus_domestica	MD00G1165000.v1.1 MD04G1050900.v1.1
prunus_persica	Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1
pyrus_communis	pycom04g04500 pycom06g04180
rosa_chinensis	RchiOBHm_Chr7g0205091
rosa_laevigata	RLG00000003402
rosa_multiflora	Rmu_sc0005112.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252580
rosa_rugosa	Rorug07G0087900 Rorug07G0088000 Rorug07G0095500.1
rosa_samantha	Rh7AG218600 Rh7BG215100 Rh7CG231700 Rh7DG226000
rosa_wichuraiana	Rw7G018910 Rw7G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 449
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	4 cut(s)	41, 66, 135, 157
AcoI	YGGCCR	2 cut(s)	42, 154
AcsI	RAATTY	3 cut(s)	369, 413, 508
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	2 cut(s)	216, 258
AfaI	GTAC	3 cut(s)	180, 387, 592
AfiI	CCNNNNNNNGG	3 cut(s)	65, 578, 757
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	6 cut(s)	97, 374, 446, 600, 700, 755
AjnI	CCWGG	2 cut(s)	352, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	293, 627
AluI	AGCT	2 cut(s)	293, 627
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	3 cut(s)	42, 154, 337
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	3 cut(s)	369, 413, 508
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	215, 449
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	2 cut(s)	526, 625
BciT130I	CCWGG	2 cut(s)	354, 573
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	3 cut(s)	42, 133, 157
BlsI	GCNGC	3 cut(s)	43, 134, 158
Bme1390I	CCNGG	2 cut(s)	354, 573
BmiI	GGNNCC	2 cut(s)	217, 451
BmrFI	CCNGG	2 cut(s)	354, 573
BmsI	GCATC	2 cut(s)	135, 214
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	3 cut(s)	283, 546, 751
BsaHI	GRCGYC	2 cut(s)	216, 258
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 578, 757
Bse1I	ACTGG	4 cut(s)	121, 182, 632, 692
Bse3DI	GCAATG	1 cut(s)	464
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	354, 573
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	3 cut(s)	65, 578, 757
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	4 cut(s)	121, 182, 632, 692
BseXI	GCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	44, 156, 339
BshNI	GGYRCC	2 cut(s)	215, 449
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	65, 578, 757
BsnI	GGCC	3 cut(s)	44, 156, 339
Bsp13I	TCCGGA	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	385
BspACI	CCGC	4 cut(s)	41, 66, 135, 157
BspANI	GGCC	3 cut(s)	44, 156, 339
BspCNI	CTCAG	1 cut(s)	684
BspEI	TCCGGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	217, 451
BspT107I	GGYRCC	2 cut(s)	215, 449
BsrDI	GCAATG	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	121, 182, 632, 692
BssECI	CCNNGG	1 cut(s)	353
BssNI	GRCGYC	2 cut(s)	216, 258
Bst2UI	CCWGG	2 cut(s)	354, 573
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	2 cut(s)	216, 258
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	295, 527, 569
BstDEI	CTNAG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
BstNI	CCWGG	2 cut(s)	354, 573
BstNSI	RCATGY	2 cut(s)	251, 529
BstSCI	CCNGG	2 cut(s)	352, 571
BstV1I	GCAGC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	44, 156, 339
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	295, 527, 569
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	2 cut(s)	266, 735
Csp6I	GTAC	3 cut(s)	179, 386, 591
CviAII	CATG	4 cut(s)	199, 248, 323, 526
CviQI	GTAC	3 cut(s)	179, 386, 591
DdeI	CTNAG	1 cut(s)	671
DinI	GGCGCC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	42, 154
EciI	GGCGGA	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	352, 571
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
FaeI	CATG	4 cut(s)	202, 251, 326, 529
FaiI	YATR	9 cut(s)	200, 249, 287, 324, 488, 527, 555, 579, 606
FatI	CATG	4 cut(s)	198, 247, 322, 525
Fnu4HI	GCNGC	3 cut(s)	42, 133, 157
FokI	GGATG	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	42, 133, 157
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	42, 133, 157
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	44, 156, 339
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	2 cut(s)	266, 735
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	2 cut(s)	216, 258
Hin1II	CATG	4 cut(s)	202, 251, 326, 529
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	5 cut(s)	69, 82, 494, 688, 794
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	426
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	348, 518, 739
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	5 cut(s)	262, 452, 658, 694, 761
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	176, 364, 469, 529, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
HpyF3I	CTNAG	1 cut(s)	671
Hsp92I	GRCGYC	2 cut(s)	216, 258
Hsp92II	CATG	4 cut(s)	202, 251, 326, 529
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	275, 430
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	135, 214
MaeIII	GTNAC	2 cut(s)	250, 763
MfeI	CAATTG	1 cut(s)	789
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	2 cut(s)	496, 717
MnlI	CCTC	4 cut(s)	206, 258, 700, 726
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	2 cut(s)	165, 808
MslI	CAYNNNNRTG	2 cut(s)	29, 530
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	354, 573
MunI	CAATTG	1 cut(s)	789
MvaI	CCWGG	2 cut(s)	354, 573
MwoI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
NarI	GGCGCC	1 cut(s)	216
NlaIII	CATG	4 cut(s)	202, 251, 326, 529
NlaIV	GGNNCC	2 cut(s)	217, 451
NspI	RCATGY	2 cut(s)	251, 529
OliI	CACNNNNGTG	1 cut(s)	29
PaeI	GCATGC	1 cut(s)	529
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	69, 82, 494, 794
PkrI	GCNGC	3 cut(s)	43, 134, 158
PleI	GAGTC	1 cut(s)	696
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	696
PscI	ACATGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	352, 571
PspGI	CCWGG	2 cut(s)	352, 571
PspN4I	GGNNCC	2 cut(s)	217, 451
RsaI	GTAC	3 cut(s)	180, 387, 592
RsaNI	GTAC	3 cut(s)	179, 386, 591
RseI	CAYNNNNRTG	2 cut(s)	29, 530
SaqAI	TTAA	2 cut(s)	165, 808
SatI	GCNGC	3 cut(s)	42, 133, 157
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	354, 573
SetI	ASST	9 cut(s)	175, 273, 295, 451, 598, 629, 646, 669, 737
SfaNI	GCATC	2 cut(s)	135, 214
SfoI	GGCGCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	29, 530
SmlI	CTYRAG	3 cut(s)	262, 561, 730
SmoI	CTYRAG	3 cut(s)	262, 561, 730
SphI	GCATGC	1 cut(s)	529
SsiI	CCGC	4 cut(s)	41, 66, 135, 157
SspDI	GGCGCC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	352, 571
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	636, 655
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	2 cut(s)	44, 159
TfiI	GAWTC	4 cut(s)	69, 82, 494, 794
Tru1I	TTAA	2 cut(s)	165, 808
Tru9I	TTAA	2 cut(s)	165, 808
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	3 cut(s)	453, 486, 503
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	3 cut(s)	369, 413, 508
XceI	RCATGY	2 cut(s)	251, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.