Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005315

Physical Location & Seq

Genomic Coordinates Forward (+)

21648057 .. 21653096

Gene Structure 5040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG231700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGGGAAGCAGTAAGAGTGGCACGGTGGTGGTGGTGGCGGCCAATGAGAGAAAGCCAAGTGGCGGAATCCGGATTGGGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATCGGCTGCGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGCGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGATGCCTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTTTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGCACAAACAATGACAAAAATGATGACAAAATTTGGAATTGCTCCCAATTCACCAATCCTTCAAGGTGCCATTCCAAGTTCATTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCAATCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGTTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCACTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAAGTGGCTGGACGCTTGAGGTCGGAGAATAAAATCCTTCAAATGGTATTGAAACACCAGCAAGTCATTGACGAGCTCACGGAGGAGAATGAGAAGCTTCGCCATATACTAGTGGAAGACCTGAAAGTACCACCTAGCAAGCTGCAAGCACATTATACAAGTAAAATCAAATATCCATGTTCAGATTGCTTTGAATGTCGAAGAAAACAAAGGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

32.91

Weight (kDa)

9.59

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17540
fragaria_vesca	FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140
malus_domestica	MD00G1165000.v1.1 MD04G1050900.v1.1
prunus_persica	Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1
pyrus_communis	pycom04g04500 pycom06g04180
rosa_chinensis	RchiOBHm_Chr7g0205091
rosa_laevigata	RLG00000003402
rosa_multiflora	Rmu_sc0005112.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252580
rosa_rugosa	Rorug07G0087900 Rorug07G0088000 Rorug07G0095500.1
rosa_samantha	Rh7AG218600 Rh7BG215100 Rh7CG231700 Rh7DG226000
rosa_wichuraiana	Rw7G018910 Rw7G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 449
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	4 cut(s)	41, 66, 135, 157
AcoI	YGGCCR	2 cut(s)	42, 154
AcsI	RAATTY	2 cut(s)	369, 413
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	3 cut(s)	180, 589, 840
AfiI	CCNNNNNNNGG	3 cut(s)	65, 575, 754
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	8 cut(s)	97, 374, 446, 597, 697, 752, 763, 905
AhlI	ACTAGT	1 cut(s)	820
AjnI	CCWGG	2 cut(s)	352, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	293, 624, 787, 808, 853
AluI	AGCT	5 cut(s)	293, 624, 787, 808, 853
Alw21I	GWGCWC	1 cut(s)	789
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	3 cut(s)	42, 154, 337
ApeKI	GCWGC	3 cut(s)	132, 383, 853
ApoI	RAATTY	2 cut(s)	369, 413
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	215, 449
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	1 cut(s)	789
BbvI	GCAGC	3 cut(s)	119, 370, 840
BccI	CCATC	2 cut(s)	523, 622
BciT130I	CCWGG	2 cut(s)	354, 570
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	2 cut(s)	821, 846
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	5 cut(s)	42, 133, 157, 384, 854
BlsI	GCNGC	5 cut(s)	43, 134, 158, 385, 855
Bme1390I	CCNGG	2 cut(s)	354, 570
BmiI	GGNNCC	2 cut(s)	217, 451
BmrFI	CCNGG	2 cut(s)	354, 570
BmsI	GCATC	3 cut(s)	135, 214, 247
BpiI	GAAGAC	1 cut(s)	834
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	3 cut(s)	283, 543, 748
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 575, 754
Bse1I	ACTGG	4 cut(s)	121, 182, 629, 689
Bse3DI	GCAATG	1 cut(s)	464
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	354, 570
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	3 cut(s)	65, 575, 754
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	682
BseNI	ACTGG	4 cut(s)	121, 182, 629, 689
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	3 cut(s)	119, 370, 840
BsgI	GTGCAG	2 cut(s)	195, 369
BshFI	GGCC	3 cut(s)	44, 156, 339
BshNI	GGYRCC	2 cut(s)	215, 449
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	65, 575, 754
BsnI	GGCC	3 cut(s)	44, 156, 339
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp13I	TCCGGA	1 cut(s)	72
BspACI	CCGC	4 cut(s)	41, 66, 135, 157
BspANI	GGCC	3 cut(s)	44, 156, 339
BspCNI	CTCAG	1 cut(s)	681
BspEI	TCCGGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	217, 451
BspT107I	GGYRCC	2 cut(s)	215, 449
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	4 cut(s)	121, 182, 629, 689
BssECI	CCNNGG	1 cut(s)	353
BssNI	GRCGYC	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	354, 570
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	295, 851, 858
BstDEI	CTNAG	1 cut(s)	668
BstF5I	GGATG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
BstNI	CCWGG	2 cut(s)	354, 570
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	352, 568
BstV1I	GCAGC	3 cut(s)	119, 370, 840
BstV2I	GAAGAC	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	44, 156, 339
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	295, 851, 858
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	3 cut(s)	179, 588, 839
CviAII	CATG	5 cut(s)	199, 248, 323, 523, 888
CviQI	GTAC	3 cut(s)	179, 588, 839
DdeI	CTNAG	1 cut(s)	668
DinI	GGCGCC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	42, 154
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	787
Eco24I	GRGCYC	1 cut(s)	789
Eco53kI	GAGCTC	1 cut(s)	787
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	787
EcoRII	CCWGG	2 cut(s)	352, 568
EcoT38I	GRGCYC	1 cut(s)	789
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
FaeI	CATG	5 cut(s)	202, 251, 326, 526, 891
FatI	CATG	5 cut(s)	198, 247, 322, 522, 887
Fnu4HI	GCNGC	5 cut(s)	42, 133, 157, 384, 854
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	5 cut(s)	42, 133, 157, 384, 854
FspBI	CTAG	2 cut(s)	821, 846
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	5 cut(s)	42, 133, 157, 384, 854
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	44, 156, 339
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	732
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	202, 251, 326, 526, 891
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	806
HinfI	GANTC	4 cut(s)	69, 82, 494, 685
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	426
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	348, 515, 736, 895
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	5 cut(s)	262, 452, 655, 691, 758
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	7 cut(s)	176, 364, 386, 469, 526, 554, 856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
HpyF3I	CTNAG	1 cut(s)	668
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	5 cut(s)	202, 251, 326, 526, 891
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	275, 430
Lsp1109I	GCAGC	3 cut(s)	119, 370, 840
LweI	GCATC	3 cut(s)	135, 214, 247
MaeI	CTAG	2 cut(s)	821, 846
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	839, 924
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	7 cut(s)	166, 369, 374, 413, 420, 430, 607
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	2 cut(s)	493, 714
MnlI	CCTC	5 cut(s)	206, 258, 697, 723, 787
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	29, 527
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	354, 570
MvaI	CCWGG	2 cut(s)	354, 570
MwoI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
NarI	GGCGCC	1 cut(s)	216
NlaIII	CATG	5 cut(s)	202, 251, 326, 526, 891
NlaIV	GGNNCC	2 cut(s)	217, 451
NspI	RCATGY	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	29
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	69, 82, 494
PkrI	GCNGC	5 cut(s)	43, 134, 158, 385, 855
PleI	GAGTC	1 cut(s)	693
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	693
PscI	ACATGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	789
Psp6I	CCWGG	2 cut(s)	352, 568
PspGI	CCWGG	2 cut(s)	352, 568
PspN4I	GGNNCC	2 cut(s)	217, 451
RsaI	GTAC	3 cut(s)	180, 589, 840
RsaNI	GTAC	3 cut(s)	179, 588, 839
RseI	CAYNNNNRTG	2 cut(s)	29, 527
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	42, 133, 157, 384, 854
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	2 cut(s)	354, 570
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	3 cut(s)	135, 214, 247
SfoI	GGCGCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	29, 527
SmlI	CTYRAG	3 cut(s)	262, 558, 727
SmoI	CTYRAG	3 cut(s)	262, 558, 727
SpeI	ACTAGT	1 cut(s)	820
Sse9I	AATT	7 cut(s)	166, 369, 374, 413, 420, 430, 607
SsiI	CCGC	4 cut(s)	41, 66, 135, 157
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	821, 846
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	352, 568
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	652, 910
TasI	AATT	7 cut(s)	166, 369, 374, 413, 420, 430, 607
TauI	GCSGC	2 cut(s)	44, 159
TfiI	GAWTC	3 cut(s)	69, 82, 494
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	3 cut(s)	132, 383, 853
TspDTI	ATGAA	3 cut(s)	453, 486, 503
TspGWI	ACGGA	3 cut(s)	75, 671, 806
TspRI	CASTG	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	2 cut(s)	369, 413
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	2 cut(s)	821, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.