Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005315

Physical Location & Seq

Genomic Coordinates Forward (+)

11869104 .. 11874668

Gene Structure 5565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20140.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGGGAAGCAGTAAGGTGGTGGTGGTGGCCAATGAGAAGAAGCCGATTCGAATAGGGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACTGGGTTTGGCATAGGCTGTGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTGGTAAATCAAGTCATGGGTGCCACAAGAGGTGCCACTGATGCTTTTTCGGGAGTTAGCAGACATGTAACTGACGCCTTAAGGAAGGTTGGAGCAAAGAACATTGAAGCCGGCATTGGTTGTGGCGTTGGTTTTGGACATGGCTTTGGAGTTGGCCTTGCTCTGAAACCAGGGATTTTGCAACAAATTCAACTGTTTTCTATGCAAACAATGGCAAAAATGATGACAAAATTTGGAATTTCTCCCAATTTACCAATCCTTCAAGGTGCCATTCCAAGTTCATTGCAAAGCGGCATTGGCGTTATGAATGATTCATCAAGCCAAAATCCAGTCGGAAATATAATGCAGATGGCAACAAAACCAGCAGACTATGCAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTACATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGTACAGAGAAGGTTCTCAGCAGCTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGATAGTGAACTAAGTGACGTGGCTGGACGCTTGAGGTCGGAGAATAAAATCCTTCAAATGGTATTGAAACACCAGCAAATCATTGACGAGCTCACAGAGGAGAATGAGAAGCTTCGCCATATACTAGTTGAAGACCTGAAAGTACCACCTAGCAAGCTGCAAGCATCTTATACAAGTAAAATCAGATCTCCATGTTCAGATTGCTTTGAATGTCGAAGAAAACAAAGAAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

32.71

Weight (kDa)

9.53

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17540
fragaria_vesca	FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140
malus_domestica	MD00G1165000.v1.1 MD04G1050900.v1.1
prunus_persica	Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1
pyrus_communis	pycom04g04500 pycom06g04180
rosa_chinensis	RchiOBHm_Chr7g0205091
rosa_laevigata	RLG00000003402
rosa_multiflora	Rmu_sc0005112.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252580
rosa_rugosa	Rorug07G0087900 Rorug07G0088000 Rorug07G0095500.1
rosa_samantha	Rh7AG218600 Rh7BG215100 Rh7CG231700 Rh7DG226000
rosa_wichuraiana	Rw7G018910 Rw7G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	182, 194, 428
AciI	CCGC	2 cut(s)	136, 453
AcoI	YGGCCR	2 cut(s)	30, 133
AcsI	RAATTY	3 cut(s)	348, 392, 399
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	159, 571, 637, 831
AfiI	CCNNNNNNNGG	2 cut(s)	557, 745
AflII	CTTAAG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	226
AhlI	ACTAGT	1 cut(s)	811
AjiI	CACGTC	1 cut(s)	706
AjnI	CCWGG	2 cut(s)	331, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	5 cut(s)	606, 657, 778, 799, 844
AluI	AGCT	5 cut(s)	606, 657, 778, 799, 844
Alw21I	GWGCWC	1 cut(s)	780
AoxI	GGCC	3 cut(s)	30, 133, 316
ApeKI	GCWGC	2 cut(s)	654, 844
ApoI	RAATTY	3 cut(s)	348, 392, 399
AseI	ATTAAT	1 cut(s)	144
AsuII	TTCGAA	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	3 cut(s)	182, 194, 428
BanII	GRGCYC	1 cut(s)	780
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	2 cut(s)	666, 831
BccI	CCATC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	333, 552
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	2 cut(s)	812, 837
BfrI	CTTAAG	1 cut(s)	241
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	4 cut(s)	136, 454, 655, 845
BlsI	GCNGC	4 cut(s)	137, 455, 656, 846
Bme1390I	CCNGG	2 cut(s)	333, 552
BmgBI	CACGTC	1 cut(s)	706
BmiI	GGNNCC	3 cut(s)	184, 196, 430
BmrFI	CCNGG	2 cut(s)	333, 552
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	193, 860
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	525, 739
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 745
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	5 cut(s)	100, 161, 491, 611, 671
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	333, 552
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	557, 745
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	664
BseNI	ACTGG	5 cut(s)	100, 161, 491, 611, 671
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	666, 831
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	32, 135, 318
BshNI	GGYRCC	3 cut(s)	182, 194, 428
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	557, 745
BsnI	GGCC	3 cut(s)	32, 135, 318
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	1 cut(s)	872
BspACI	CCGC	2 cut(s)	136, 453
BspANI	GGCC	3 cut(s)	32, 135, 318
BspCNI	CTCAG	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	184, 196, 430
BspT104I	TTCGAA	1 cut(s)	52
BspT107I	GGYRCC	3 cut(s)	182, 194, 428
BspTI	CTTAAG	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	5 cut(s)	100, 161, 491, 611, 671
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	872
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	333, 552
Bst4CI	ACNGT	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	4 cut(s)	274, 548, 842, 849
BstDEI	CTNAG	2 cut(s)	650, 698
BstKTI	GATC	1 cut(s)	875
BstMBI	GATC	1 cut(s)	872
BstMWI	GCNNNNNNNGC	4 cut(s)	135, 203, 459, 533
BstNI	CCWGG	2 cut(s)	333, 552
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	331, 550
BstV1I	GCAGC	2 cut(s)	666, 831
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	872
BstYI	RGATCY	1 cut(s)	872
BsuRI	GGCC	3 cut(s)	32, 135, 318
BtrI	CACGTC	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	168, 198
Cac8I	GCNNGC	4 cut(s)	274, 548, 842, 849
Cfr10I	RCCGGY	1 cut(s)	272
CseI	GACGC	2 cut(s)	245, 723
Csp6I	GTAC	4 cut(s)	158, 570, 636, 830
CviAII	CATG	4 cut(s)	178, 227, 302, 879
CviQI	GTAC	4 cut(s)	158, 570, 636, 830
DdeI	CTNAG	2 cut(s)	650, 698
DpnI	GATC	1 cut(s)	874
DpnII	GATC	1 cut(s)	872
EaeI	YGGCCR	2 cut(s)	30, 133
Ecl136II	GAGCTC	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	780
Eco53kI	GAGCTC	1 cut(s)	778
EcoICRI	GAGCTC	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	331, 550
EcoT38I	GRGCYC	1 cut(s)	780
FaeI	CATG	4 cut(s)	181, 230, 305, 882
FatI	CATG	4 cut(s)	177, 226, 301, 878
Fnu4HI	GCNGC	4 cut(s)	136, 454, 655, 845
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	4 cut(s)	136, 454, 655, 845
FspBI	CTAG	2 cut(s)	812, 837
GluI	GCNGC	4 cut(s)	136, 454, 655, 845
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	32, 135, 318
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	2 cut(s)	245, 723
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	181, 230, 305, 882
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	4 cut(s)	49, 61, 473, 667
HpaII	CCGG	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	69, 695
Hpy188I	TCNGA	5 cut(s)	327, 497, 727, 872, 886
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	2 cut(s)	69, 695
HpyAV	CCTTC	5 cut(s)	241, 431, 637, 673, 749
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	7 cut(s)	155, 343, 367, 448, 508, 536, 847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	135, 203, 459, 533
HpyF3I	CTNAG	2 cut(s)	650, 698
HpySE526I	ACGT	1 cut(s)	705
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	181, 230, 305, 882
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	872
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	2 cut(s)	666, 831
LweI	GCATC	2 cut(s)	193, 860
MaeI	CTAG	2 cut(s)	812, 837
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	229, 701
MalI	GATC	1 cut(s)	874
MboI	GATC	1 cut(s)	872
MboII	GAAGA	3 cut(s)	52, 830, 915
MflI	RGATCY	1 cut(s)	872
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	6 cut(s)	145, 348, 392, 399, 409, 589
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	676
MmeI	TCCRAC	3 cut(s)	232, 475, 705
MnlI	CCTC	4 cut(s)	185, 679, 714, 778
Mox20I	TGGCCA	1 cut(s)	32
MroNI	GCCGGC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	2 cut(s)	144, 242
Msp20I	TGGCCA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	333, 552
MvaI	CCWGG	2 cut(s)	333, 552
MwoI	GCNNNNNNNGC	4 cut(s)	135, 203, 459, 533
NaeI	GCCGGC	1 cut(s)	274
NdeII	GATC	1 cut(s)	872
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	4 cut(s)	181, 230, 305, 882
NlaIV	GGNNCC	3 cut(s)	184, 196, 430
NmuCI	GTSAC	1 cut(s)	701
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	49, 61, 473
PkrI	GCNGC	4 cut(s)	137, 455, 656, 846
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
PscI	ACATGT	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	331, 550
PspGI	CCWGG	2 cut(s)	331, 550
PspN4I	GGNNCC	3 cut(s)	184, 196, 430
PsuI	RGATCY	1 cut(s)	872
RsaI	GTAC	4 cut(s)	159, 571, 637, 831
RsaNI	GTAC	4 cut(s)	158, 570, 636, 830
SacI	GAGCTC	1 cut(s)	780
SaqAI	TTAA	2 cut(s)	144, 242
SatI	GCNGC	4 cut(s)	136, 454, 655, 845
Sau3AI	GATC	1 cut(s)	872
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	2 cut(s)	333, 552
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	2 cut(s)	193, 860
SfuI	TTCGAA	1 cut(s)	52
SmlI	CTYRAG	3 cut(s)	241, 540, 718
SmoI	CTYRAG	3 cut(s)	241, 540, 718
SpeI	ACTAGT	1 cut(s)	811
Sse9I	AATT	6 cut(s)	145, 348, 392, 399, 409, 589
SsiI	CCGC	2 cut(s)	136, 453
SspMI	CTAG	2 cut(s)	812, 837
SstI	GAGCTC	1 cut(s)	780
StyD4I	CCNGG	2 cut(s)	331, 550
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	52, 901
TasI	AATT	6 cut(s)	145, 348, 392, 399, 409, 589
TauI	GCSGC	2 cut(s)	138, 456
TfiI	GAWTC	3 cut(s)	49, 61, 473
Tru1I	TTAA	2 cut(s)	144, 242
Tru9I	TTAA	2 cut(s)	144, 242
TscAI	CASTG	2 cut(s)	168, 205
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	2 cut(s)	654, 844
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	432, 465, 482
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	168, 205
Vha464I	CTTAAG	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	144
XapI	RAATTY	3 cut(s)	348, 392, 399
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	2 cut(s)	812, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.