RLG00000003402

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005315
Physical Location & Seq
Reverse (-)
48072064 .. 48077045
4982 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003402

Sequence Viewer

Length: 939 bp
ATGGAGGGAAGTAAGAGTGGCACGGTGGTGGTGGTGGCGGCCAATGAGAGAAAGCCAAGTGGCGGAATCCGGATTGGGAATCCGTTTACTTTGAAAGTGGGACAAGTATTTACTGGCTTTGGCATAGGCTGTGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGCGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGACGCTTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTTTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGTACAAACAATGACAAAAATGATGGCAAAGTTTGGAGTTGCTCCCAATTCACCAATCCTTCAAGGTGCCATTCCAAGTTCGTTGCAAAGTGGCATTGGCATTATGAATGATTCATCAACTCAAGGCCAAAATTCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAAGTGGCTGGACGCTTGAGGTCGGAGAATAAAATCCTTCAAATGGTATTGAAACACCAGCAAGTCATTGACGAGCTCACGGAGGAGAATGAGAAGCTTCGCCGTATACTAGTGGAAGACCTGAAAGTACCACCTAGCAAGCTGCAGGCACATTATACAAGTAAAATCAAATATCCATGTTCAGATTGCTTTGAATGTCGAAGAAAACAAAGGAGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

33.13

Weight (kDa)

9.66

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 212, 446
AccI GTMKAC 1 cut(s) 823
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 3 cut(s) 38, 63, 154
AcoI YGGCCR 2 cut(s) 39, 151
AcsI RAATTY 2 cut(s) 366, 511
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 4 cut(s) 177, 384, 595, 846
AfiI CCNNNNNNNGG 3 cut(s) 62, 581, 760
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 8 cut(s) 94, 371, 443, 603, 703, 758, 769, 911
AhlI ACTAGT 1 cut(s) 826
AjnI CCWGG 2 cut(s) 349, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 290, 630, 793, 814, 859
AluI AGCT 5 cut(s) 290, 630, 793, 814, 859
Alw21I GWGCWC 1 cut(s) 795
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 4 cut(s) 39, 151, 334, 505
ApeKI GCWGC 1 cut(s) 859
ApoI RAATTY 2 cut(s) 366, 511
AseI ATTAAT 1 cut(s) 162
AspLEI GCGC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 423
BanI GGYRCC 2 cut(s) 212, 446
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 1 cut(s) 846
BccI CCATC 3 cut(s) 397, 529, 628
BceAI ACGGC 1 cut(s) 804
BciT130I CCWGG 2 cut(s) 351, 576
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 2 cut(s) 827, 852
BfmI CTRYAG 1 cut(s) 860
BfoI RGCGCY 1 cut(s) 216
BisI GCNGC 3 cut(s) 39, 154, 860
BlsI GCNGC 3 cut(s) 40, 155, 861
Bme1390I CCNGG 2 cut(s) 351, 576
BmiI GGNNCC 2 cut(s) 214, 448
BmrFI CCNGG 2 cut(s) 351, 576
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 1 cut(s) 618
BpuEI CTTGAG 3 cut(s) 486, 549, 754
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 581, 760
Bse1I ACTGG 4 cut(s) 118, 179, 635, 695
BseAI TCCGGA 1 cut(s) 69
BseBI CCWGG 2 cut(s) 351, 576
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 3 cut(s) 62, 581, 760
BseMII CTCAG 1 cut(s) 688
BseNI ACTGG 4 cut(s) 118, 179, 635, 695
BseRI GAGGAG 1 cut(s) 815
BseXI GCAGC 1 cut(s) 846
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 4 cut(s) 41, 153, 336, 507
BshNI GGYRCC 2 cut(s) 212, 446
BsiHKAI GWGCWC 1 cut(s) 795
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 3 cut(s) 62, 581, 760
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 4 cut(s) 41, 153, 336, 507
Bsp1286I GDGCHC 1 cut(s) 795
Bsp13I TCCGGA 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 382
BspACI CCGC 3 cut(s) 38, 63, 154
BspANI GGCC 4 cut(s) 41, 153, 336, 507
BspCNI CTCAG 1 cut(s) 687
BspEI TCCGGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 214, 448
BspMAI CTGCAG 1 cut(s) 864
BspT107I GGYRCC 2 cut(s) 212, 446
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 4 cut(s) 118, 179, 635, 695
BssECI CCNNGG 1 cut(s) 350
BssNAI GTATAC 1 cut(s) 824
BssNI GRCGYC 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 824
Bst2UI CCWGG 2 cut(s) 351, 576
Bst4CI ACNGT 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 4 cut(s) 292, 572, 857, 864
BstDEI CTNAG 1 cut(s) 674
BstF5I GGATG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 153, 221
BstNI CCWGG 2 cut(s) 351, 576
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 349, 574
BstSFI CTRYAG 1 cut(s) 860
BstV1I GCAGC 1 cut(s) 846
BstV2I GAAGAC 1 cut(s) 840
BstZ17I GTATAC 1 cut(s) 824
BsuRI GGCC 4 cut(s) 41, 153, 336, 507
BtsCI GGATG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 292, 572, 857, 864
CfoI GCGC 1 cut(s) 215
CseI GACGC 2 cut(s) 263, 738
Csp6I GTAC 4 cut(s) 176, 383, 594, 845
CviAII CATG 5 cut(s) 196, 245, 320, 529, 894
CviQI GTAC 4 cut(s) 176, 383, 594, 845
DdeI CTNAG 1 cut(s) 674
DinI GGCGCC 1 cut(s) 214
EaeI YGGCCR 2 cut(s) 39, 151
EciI GGCGGA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 793
Eco24I GRGCYC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 349, 574
EcoT38I GRGCYC 1 cut(s) 795
EgeI GGCGCC 1 cut(s) 214
EheI GGCGCC 1 cut(s) 214
FaeI CATG 5 cut(s) 199, 248, 323, 532, 897
FaqI GGGAC 1 cut(s) 114
FatI CATG 5 cut(s) 195, 244, 319, 528, 893
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 3 cut(s) 39, 154, 860
FokI GGATG 1 cut(s) 312
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 3 cut(s) 39, 154, 860
FspBI CTAG 2 cut(s) 827, 852
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 39, 154, 860
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 4 cut(s) 41, 153, 336, 507
HapII CCGG 1 cut(s) 70
HgaI GACGC 2 cut(s) 263, 738
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 5 cut(s) 199, 248, 323, 532, 897
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 4 cut(s) 66, 79, 491, 691
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 423
Hpy166II GTNNAC 2 cut(s) 87, 824
Hpy188I TCNGA 4 cut(s) 345, 521, 742, 901
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 87, 824
HpyAV CCTTC 5 cut(s) 259, 449, 661, 697, 764
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 6 cut(s) 173, 361, 466, 532, 560, 862
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 221
HpyF3I CTNAG 1 cut(s) 674
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 199, 248, 323, 532, 897
HspAI GCGC 1 cut(s) 213
KasI GGCGCC 1 cut(s) 212
Kpn2I TCCGGA 1 cut(s) 69
LmnI GCTCC 2 cut(s) 272, 427
Lsp1109I GCAGC 1 cut(s) 846
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 827, 852
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 2 cut(s) 845, 930
MhlI GDGCHC 1 cut(s) 795
MluCI AATT 6 cut(s) 163, 366, 371, 427, 511, 613
Mly113I GGCGCC 1 cut(s) 213
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 2 cut(s) 499, 720
MnlI CCTC 5 cut(s) 203, 255, 703, 729, 793
MroI TCCGGA 1 cut(s) 69
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 2 cut(s) 26, 533
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 2 cut(s) 351, 576
MvaI CCWGG 2 cut(s) 351, 576
MwoI GCNNNNNNNGC 2 cut(s) 153, 221
NarI GGCGCC 1 cut(s) 213
NlaIII CATG 5 cut(s) 199, 248, 323, 532, 897
NlaIV GGNNCC 2 cut(s) 214, 448
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 26
PciI ACATGT 1 cut(s) 244
PfeI GAWTC 3 cut(s) 66, 79, 491
PkrI GCNGC 3 cut(s) 40, 155, 861
PleI GAGTC 1 cut(s) 699
PluTI GGCGCC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 699
PscI ACATGT 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 349, 574
PspGI CCWGG 2 cut(s) 349, 574
PspN4I GGNNCC 2 cut(s) 214, 448
PstI CTGCAG 1 cut(s) 864
RsaI GTAC 4 cut(s) 177, 384, 595, 846
RsaNI GTAC 4 cut(s) 176, 383, 594, 845
RseI CAYNNNNRTG 2 cut(s) 26, 533
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 39, 154, 860
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 351, 576
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 1 cut(s) 211
SfcI CTRYAG 1 cut(s) 860
SfoI GGCGCC 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 26, 533
SmlI CTYRAG 3 cut(s) 501, 564, 733
SmoI CTYRAG 3 cut(s) 501, 564, 733
SpeI ACTAGT 1 cut(s) 826
Sse9I AATT 6 cut(s) 163, 366, 371, 427, 511, 613
SsiI CCGC 3 cut(s) 38, 63, 154
SspDI GGCGCC 1 cut(s) 212
SspMI CTAG 2 cut(s) 827, 852
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 2 cut(s) 349, 574
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 658, 916
TasI AATT 6 cut(s) 163, 366, 371, 427, 511, 613
TatI WGTACW 1 cut(s) 382
TauI GCSGC 2 cut(s) 41, 156
TfiI GAWTC 3 cut(s) 66, 79, 491
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 859
TspDTI ATGAA 2 cut(s) 483, 500
TspGWI ACGGA 3 cut(s) 72, 677, 812
TspRI CASTG 1 cut(s) 223
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 2 cut(s) 366, 511
XceI RCATGY 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 823
XspI CTAG 2 cut(s) 827, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.