Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005315

Physical Location & Seq

Genomic Coordinates Reverse (-)

5251652 .. 5255673

Gene Structure 4022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGGGGGGCAGCAACAGTAGCAAGAGTGGCGTGGTGGTGGTGACCAATGAGAGAAGGCCAAGTGGGGGAATCCGAATCCAGAATCCGTTTACCTTGAAAGTGGGTCAAGTATTTACAGGCTTTGGCATAGGCTGCGGTGTTGGTATCGGTGTTGGCCGCCCCATAAATCTAGGTGCAATACCAGTACTGAATCAAGTCATGGGTGCTACAAGAGGTGCCACTGATGCATTATCTGGTGCTAGCAGACATGTAAACAACGCTTTGAGGAAGGTGGGAGCCAAGAACATTGAAGCGGGCATTGGATGTGGCGTTGGTATTGGTCATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGGTGTTGCAACAAATTCAGTTTCATTTTGTACAAGGAATGACAAAGATAATGACGAAGTTTGGAATTTCTCCCAATTTAGCCATTGGTCAAGGTGCCCTCCCAAGTTCTTTGCAAAGTGCCATGGGAAATGTAAATGACCCGAGCCAAAATTCAATGGGAAGTAGCATGCCGTTGTCAACAAAACCACCAGACCATACATCTCTAAGTTTGCCTGGATATGGAAATAATGGTACTGGTTCTCCGGTTGATACACCTCTTGGTAGTCGAACAGAAAAAGTTCTCAGCAGTTTTCTTCAGAGTCCACTTCTGAAGGGAGAGGACAGTGAACCAAATGAAGGGGCTGGACGCTTGAGGTCGGAGAACAAAATCCTTCAAATGATATTGAAACACCAGCAAGTCATTGAAGAGCTGATGGAGGAGAACGATAAGCTTCGCCACATACTAGTGGAAGACCTGAAAGTCTCACCTAGCAAGCTGCAAGCAAGTTATTCAAGTAAAAACAGATCTCCATGTACAGATTGTTTTGAGTGTCGAAGAAAACAAAGGAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

32.08

Weight (kDa)

9.71

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17540
fragaria_vesca	FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140
malus_domestica	MD00G1165000.v1.1 MD04G1050900.v1.1
prunus_persica	Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1
pyrus_communis	pycom04g04500 pycom06g04180
rosa_chinensis	RchiOBHm_Chr7g0205091
rosa_laevigata	RLG00000003402
rosa_multiflora	Rmu_sc0005112.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252580
rosa_rugosa	Rorug07G0087900 Rorug07G0088000 Rorug07G0095500.1
rosa_samantha	Rh7AG218600 Rh7BG215100 Rh7CG231700 Rh7DG226000
rosa_wichuraiana	Rw7G018910 Rw7G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	818
AccB1I	GGYRCC	2 cut(s)	218, 452
AciI	CCGC	3 cut(s)	138, 160, 296
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	372, 423, 508
AcuI	CTGAAG	3 cut(s)	371, 638, 689
AfaI	GTAC	4 cut(s)	189, 390, 592, 874
AfiI	CCNNNNNNNGG	3 cut(s)	68, 578, 695
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	7 cut(s)	100, 293, 513, 734, 745, 764, 852
AhlI	ACTAGT	1 cut(s)	802
AjnI	CCWGG	2 cut(s)	355, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	3 cut(s)	769, 790, 835
AluI	AGCT	3 cut(s)	769, 790, 835
Alw26I	GTCTC	1 cut(s)	826
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	59, 157, 340
ApeKI	GCWGC	3 cut(s)	12, 135, 835
ApoI	RAATTY	3 cut(s)	372, 423, 508
Asp700I	GAANNNNTTC	1 cut(s)	636
AsuHPI	GGTGA	2 cut(s)	55, 816
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	2 cut(s)	218, 452
BbsI	GAAGAC	1 cut(s)	816
BbvI	GCAGC	3 cut(s)	24, 122, 822
BccI	CCATC	1 cut(s)	766
BceAI	ACGGC	1 cut(s)	514
BciT130I	CCWGG	2 cut(s)	357, 573
BcoDI	GTCTC	1 cut(s)	826
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	4 cut(s)	173, 243, 803, 828
BglII	AGATCT	1 cut(s)	863
BisI	GCNGC	4 cut(s)	13, 136, 160, 836
BlsI	GCNGC	4 cut(s)	14, 137, 161, 837
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	357, 573
BmeT110I	CYCGRG	1 cut(s)	499
BmiI	GGNNCC	3 cut(s)	220, 280, 454
BmrFI	CCNGG	2 cut(s)	357, 573
BmsI	GCATC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	730
BsaJI	CCNNGG	2 cut(s)	356, 480
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 578, 695
Bse1I	ACTGG	2 cut(s)	185, 598
BseBI	CCWGG	2 cut(s)	357, 573
BseDI	CCNNGG	2 cut(s)	356, 480
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	3 cut(s)	68, 578, 695
BseMII	CTCAG	1 cut(s)	655
BseNI	ACTGG	2 cut(s)	185, 598
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	24, 122, 822
BshFI	GGCC	3 cut(s)	61, 159, 342
BshNI	GGYRCC	2 cut(s)	218, 452
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	68, 578, 695
BsmAI	GTCTC	1 cut(s)	826
BsnI	GGCC	3 cut(s)	61, 159, 342
BsoBI	CYCGRG	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp1407I	TGTACA	2 cut(s)	388, 872
Bsp143I	GATC	1 cut(s)	863
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	3 cut(s)	138, 160, 296
BspANI	GGCC	3 cut(s)	61, 159, 342
BspCNI	CTCAG	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	220, 280, 454
BspOI	GCTAGC	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	759
BspT107I	GGYRCC	2 cut(s)	218, 452
BsrGI	TGTACA	2 cut(s)	388, 872
BsrI	ACTGG	2 cut(s)	185, 598
BssECI	CCNNGG	2 cut(s)	356, 480
BssMI	GATC	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	357, 573
Bst4CI	ACNGT	2 cut(s)	20, 683
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstAUI	TGTACA	2 cut(s)	388, 872
BstC8I	GCNNGC	5 cut(s)	244, 298, 527, 833, 840
BstDEI	CTNAG	2 cut(s)	563, 641
BstDSI	CCRYGG	1 cut(s)	480
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	866
BstMAI	GTCTC	1 cut(s)	826
BstMBI	GATC	1 cut(s)	863
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 30, 135, 227
BstNI	CCWGG	2 cut(s)	357, 573
BstNSI	RCATGY	2 cut(s)	254, 529
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	355, 571
BstSLI	GKGCMC	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	24, 122, 822
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	863
BstYI	RGATCY	1 cut(s)	863
BsuRI	GGCC	3 cut(s)	61, 159, 342
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	222, 688
Cac8I	GCNNGC	5 cut(s)	244, 298, 527, 833, 840
CseI	GACGC	1 cut(s)	714
Csp6I	GTAC	4 cut(s)	188, 389, 591, 873
CviAII	CATG	6 cut(s)	202, 251, 326, 481, 526, 870
CviQI	GTAC	4 cut(s)	188, 389, 591, 873
DdeI	CTNAG	2 cut(s)	563, 641
DpnI	GATC	1 cut(s)	865
DpnII	GATC	1 cut(s)	863
DrdI	GACNNNNNNGTC	1 cut(s)	818
DseDI	GACNNNNNNGTC	1 cut(s)	818
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco130I	CCWWGG	1 cut(s)	480
Eco57I	CTGAAG	3 cut(s)	371, 638, 689
Eco88I	CYCGRG	1 cut(s)	499
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	355, 571
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	6 cut(s)	205, 254, 329, 484, 529, 873
FatI	CATG	6 cut(s)	201, 250, 325, 480, 525, 869
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	13, 136, 160, 836
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	4 cut(s)	13, 136, 160, 836
FspBI	CTAG	4 cut(s)	173, 243, 803, 828
GluI	GCNGC	4 cut(s)	13, 136, 160, 836
HaeIII	GGCC	3 cut(s)	61, 159, 342
HapII	CCGG	1 cut(s)	602
HgaI	GACGC	1 cut(s)	714
Hin1II	CATG	6 cut(s)	205, 254, 329, 484, 529, 873
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	5 cut(s)	72, 78, 85, 193, 658
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	2 cut(s)	55, 816
Hpy166II	GTNNAC	5 cut(s)	93, 256, 537, 662, 686
Hpy188I	TCNGA	5 cut(s)	77, 351, 657, 669, 718
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	5 cut(s)	93, 256, 537, 662, 686
HpyAV	CCTTC	5 cut(s)	51, 265, 664, 689, 740
HpyCH4III	ACNGT	2 cut(s)	20, 683
HpyCH4V	TGCA	5 cut(s)	179, 230, 367, 472, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 30, 135, 227
HpyF3I	CTNAG	2 cut(s)	563, 641
Hsp92II	CATG	6 cut(s)	205, 254, 329, 484, 529, 873
Kzo9I	GATC	1 cut(s)	863
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	3 cut(s)	24, 122, 822
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	173, 243, 803, 828
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	865
MboI	GATC	1 cut(s)	863
MboII	GAAGA	4 cut(s)	644, 776, 821, 906
MflI	RGATCY	1 cut(s)	863
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	372, 423, 433, 508
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	7 cut(s)	209, 261, 467, 624, 670, 705, 769
Mph1103I	ATGCAT	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	803
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	357, 573
MvaI	CCWGG	2 cut(s)	357, 573
MwoI	GCNNNNNNNGC	4 cut(s)	21, 30, 135, 227
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	1 cut(s)	863
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	6 cut(s)	205, 254, 329, 484, 529, 873
NlaIV	GGNNCC	3 cut(s)	220, 280, 454
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	254, 529
PaeI	GCATGC	1 cut(s)	529
PciI	ACATGT	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	72, 78, 85, 193
PkrI	GCNGC	4 cut(s)	14, 137, 161, 837
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
PscI	ACATGT	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	355, 571
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	355, 571
PspN4I	GGNNCC	3 cut(s)	220, 280, 454
PsuI	RGATCY	1 cut(s)	863
RsaI	GTAC	4 cut(s)	189, 390, 592, 874
RsaNI	GTAC	4 cut(s)	188, 389, 591, 873
RseI	CAYNNNNRTG	1 cut(s)	803
SapI	GCTCTTC	1 cut(s)	759
SatI	GCNGC	4 cut(s)	13, 136, 160, 836
Sau3AI	GATC	1 cut(s)	863
ScaI	AGTACT	1 cut(s)	189
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	357, 573
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
SpeI	ACTAGT	1 cut(s)	802
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	4 cut(s)	372, 423, 433, 508
SsiI	CCGC	3 cut(s)	138, 160, 296
SspMI	CTAG	4 cut(s)	173, 243, 803, 828
StyD4I	CCNGG	2 cut(s)	355, 571
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	20, 683
TaqI	TCGA	2 cut(s)	625, 892
TasI	AATT	4 cut(s)	372, 423, 433, 508
TatI	WGTACW	3 cut(s)	187, 388, 872
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	4 cut(s)	72, 78, 85, 193
TscAI	CASTG	2 cut(s)	229, 688
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	12, 135, 835
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	371, 708
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	229, 688
XapI	RAATTY	3 cut(s)	372, 423, 508
XceI	RCATGY	2 cut(s)	254, 529
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	4 cut(s)	173, 243, 803, 828
ZrmI	AGTACT	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.