Rh7AG218600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005315
Physical Location & Seq
Forward (+)
20341865 .. 20346881
5017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG218600.1

Sequence Viewer

Length: 708 bp
ATGGACTTTGGGAGGCTCTTCAAGCCCAAAAATGGTGAAACCCATCACACACAAGCTTCTAAGAGACCATGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGCGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGACGCCTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTTTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGTACAAACAATGACAAAAATGATGACAAAATTTGGAATTGCTCCCAATTCACCAATCCTTCAAGGTGCCGTTCCAAGTTCATTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCAAAATTCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAAGTGGCTGGACGCTTGAGGTCGGAGAATAAAATCCTTCAAATGGTAGTAACTATTATTGACTTGTGGTTTCCAATTGATTCCGTTCTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

24.88

Weight (kDa)

9.3

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 113, 347
AcsI RAATTY 3 cut(s) 267, 311, 406
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 2 cut(s) 114, 156
AfaI GTAC 3 cut(s) 78, 285, 490
AfiI CCNNNNNNNGG 3 cut(s) 32, 476, 655
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 6 cut(s) 22, 272, 344, 498, 598, 653
AjnI CCWGG 2 cut(s) 250, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 3 cut(s) 56, 191, 525
AluI AGCT 3 cut(s) 56, 191, 525
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 3 cut(s) 267, 311, 406
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 47, 324
BanI GGYRCC 2 cut(s) 113, 347
BccI CCATC 3 cut(s) 51, 424, 523
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 2 cut(s) 252, 471
BcoDI GTCTC 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 252, 471
BmiI GGNNCC 2 cut(s) 115, 349
BmrFI CCNGG 2 cut(s) 252, 471
BmsI GCATC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 3 cut(s) 181, 444, 649
BsaHI GRCGYC 2 cut(s) 114, 156
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 476, 655
Bse1I ACTGG 3 cut(s) 80, 530, 590
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 2 cut(s) 252, 471
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 32, 476, 655
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 583
BseNI ACTGG 3 cut(s) 80, 530, 590
BsgI GTGCAG 1 cut(s) 93
BshFI GGCC 1 cut(s) 237
BshNI GGYRCC 2 cut(s) 113, 347
BslI CCNNNNNNNGG 3 cut(s) 32, 476, 655
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 283
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 115, 349
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 2 cut(s) 113, 347
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 3 cut(s) 80, 530, 590
BssECI CCNNGG 1 cut(s) 251
BssNI GRCGYC 2 cut(s) 114, 156
Bst2UI CCWGG 2 cut(s) 252, 471
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 2 cut(s) 114, 156
BstAUI TGTACA 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 193, 467
BstDEI CTNAG 2 cut(s) 60, 569
BstF5I GGATG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 22, 122
BstNI CCWGG 2 cut(s) 252, 471
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 250, 469
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 193, 467
CfoI GCGC 1 cut(s) 116
CseI GACGC 2 cut(s) 164, 633
Csp6I GTAC 3 cut(s) 77, 284, 489
CviAII CATG 5 cut(s) 69, 97, 146, 221, 424
CviQI GTAC 3 cut(s) 77, 284, 489
DdeI CTNAG 2 cut(s) 60, 569
DinI GGCGCC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 250, 469
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
FaeI CATG 5 cut(s) 72, 100, 149, 224, 427
FatI CATG 5 cut(s) 68, 96, 145, 220, 423
FokI GGATG 1 cut(s) 213
GlaI GCGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 2 cut(s) 164, 633
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 2 cut(s) 114, 156
Hin1II CATG 5 cut(s) 72, 100, 149, 224, 427
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 3 cut(s) 392, 586, 692
HphI GGTGA 2 cut(s) 47, 324
Hpy188I TCNGA 3 cut(s) 246, 416, 637
HpyAV CCTTC 5 cut(s) 160, 350, 556, 592, 659
HpyCH4V TGCA 5 cut(s) 74, 262, 367, 427, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 122
HpyF3I CTNAG 2 cut(s) 60, 569
Hsp92I GRCGYC 2 cut(s) 114, 156
Hsp92II CATG 5 cut(s) 72, 100, 149, 224, 427
HspAI GCGC 1 cut(s) 114
KasI GGCGCC 1 cut(s) 113
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 173, 328
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 148, 661
MboII GAAGA 1 cut(s) 10
MfeI CAATTG 1 cut(s) 687
MluCI AATT 9 cut(s) 267, 272, 311, 318, 328, 406, 508, 687, 702
Mly113I GGCGCC 1 cut(s) 114
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 2 cut(s) 394, 615
MnlI CCTC 5 cut(s) 6, 104, 156, 598, 624
MseI TTAA 1 cut(s) 706
MslI CAYNNNNRTG 1 cut(s) 428
MspR9I CCNGG 2 cut(s) 252, 471
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 2 cut(s) 252, 471
MwoI GCNNNNNNNGC 2 cut(s) 22, 122
NarI GGCGCC 1 cut(s) 114
NlaIII CATG 5 cut(s) 72, 100, 149, 224, 427
NlaIV GGNNCC 2 cut(s) 115, 349
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 392, 692
PleI GAGTC 1 cut(s) 594
PluTI GGCGCC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 594
PscI ACATGT 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 250, 469
PspGI CCWGG 2 cut(s) 250, 469
PspN4I GGNNCC 2 cut(s) 115, 349
RsaI GTAC 3 cut(s) 78, 285, 490
RsaNI GTAC 3 cut(s) 77, 284, 489
RseI CAYNNNNRTG 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 706
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 2 cut(s) 252, 471
SetI ASST 9 cut(s) 58, 171, 193, 349, 496, 527, 544, 567, 635
SfaNI GCATC 1 cut(s) 112
SfoI GGCGCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 3 cut(s) 160, 459, 628
SmoI CTYRAG 3 cut(s) 160, 459, 628
Sse9I AATT 9 cut(s) 267, 272, 311, 318, 328, 406, 508, 687, 702
SspDI GGCGCC 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 250, 469
TaqI TCGA 1 cut(s) 553
TasI AATT 9 cut(s) 267, 272, 311, 318, 328, 406, 508, 687, 702
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 2 cut(s) 392, 692
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 351, 384, 401
TspGWI ACGGA 2 cut(s) 572, 685
TspRI CASTG 1 cut(s) 124
XapI RAATTY 3 cut(s) 267, 311, 406
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.