Rh7BG215100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005315
Physical Location & Seq
Forward (+)
18346776 .. 18351864
5089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG215100.1

Sequence Viewer

Length: 780 bp
ATGGAGGGAAGCAGTAAGAGTGGCACAGTGGTGGTGGTGGCGGCCAATGAGAGAAAGCCAAGTGGCGGAATCCGGATTGGGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATCGGCTGCGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGTGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGACGCCTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTTTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGTACAAACAATGACAAAAATGATGACAAAATTTGGAATTGCTCCCAATTCACCAATCCTTCAAGGTGCCATTCCAAGTTCATTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCAAAATTCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAAGTGGTATGTAAAAGTTCCGACTTTAAGTCTGAAATTTTTGTGAGTTTTTTTGCCATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

26.68

Weight (kDa)

9.32

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 215, 449
AccIII TCCGGA 1 cut(s) 72
AciI CCGC 4 cut(s) 41, 66, 135, 157
AcoI YGGCCR 2 cut(s) 42, 154
AcsI RAATTY 4 cut(s) 369, 413, 508, 750
AcuI CTGAAG 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 3 cut(s) 180, 387, 592
AfiI CCNNNNNNNGG 2 cut(s) 65, 578
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 5 cut(s) 97, 374, 446, 600, 700
AhdI GACNNNNNGTC 1 cut(s) 742
AjnI CCWGG 2 cut(s) 352, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 2 cut(s) 293, 627
AluI AGCT 2 cut(s) 293, 627
Aor13HI TCCGGA 1 cut(s) 72
AoxI GGCC 3 cut(s) 42, 154, 337
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 4 cut(s) 369, 413, 508, 750
AseI ATTAAT 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 426
BanI GGYRCC 2 cut(s) 215, 449
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 526, 625
BciT130I CCWGG 2 cut(s) 354, 573
BisI GCNGC 3 cut(s) 42, 133, 157
BlsI GCNGC 3 cut(s) 43, 134, 158
Bme1390I CCNGG 2 cut(s) 354, 573
BmeRI GACNNNNNGTC 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 217, 451
BmrFI CCNGG 2 cut(s) 354, 573
BmsI GCATC 2 cut(s) 135, 214
BpmI CTGGAG 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 283, 546
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 353
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 578
Bse1I ACTGG 4 cut(s) 121, 182, 632, 692
Bse3DI GCAATG 1 cut(s) 464
BseAI TCCGGA 1 cut(s) 72
BseBI CCWGG 2 cut(s) 354, 573
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 65, 578
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 685
BseNI ACTGG 4 cut(s) 121, 182, 632, 692
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 3 cut(s) 44, 156, 339
BshNI GGYRCC 2 cut(s) 215, 449
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 65, 578
BsnI GGCC 3 cut(s) 44, 156, 339
Bsp13I TCCGGA 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 385
BspACI CCGC 4 cut(s) 41, 66, 135, 157
BspANI GGCC 3 cut(s) 44, 156, 339
BspCNI CTCAG 1 cut(s) 684
BspEI TCCGGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 217, 451
BspT107I GGYRCC 2 cut(s) 215, 449
BsrDI GCAATG 1 cut(s) 464
BsrGI TGTACA 1 cut(s) 385
BsrI ACTGG 4 cut(s) 121, 182, 632, 692
BssECI CCNNGG 1 cut(s) 353
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 354, 573
Bst4CI ACNGT 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 295, 569
BstDEI CTNAG 1 cut(s) 671
BstF5I GGATG 1 cut(s) 308
BstMWI GCNNNNNNNGC 3 cut(s) 132, 156, 224
BstNI CCWGG 2 cut(s) 354, 573
BstNSI RCATGY 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 352, 571
BstV1I GCAGC 1 cut(s) 119
BsuRI GGCC 3 cut(s) 44, 156, 339
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 33, 219
Cac8I GCNNGC 2 cut(s) 295, 569
CseI GACGC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 179, 386, 591
CviAII CATG 4 cut(s) 199, 248, 323, 526
CviQI GTAC 3 cut(s) 179, 386, 591
DdeI CTNAG 1 cut(s) 671
DriI GACNNNNNGTC 1 cut(s) 742
EaeI YGGCCR 2 cut(s) 42, 154
Eam1105I GACNNNNNGTC 1 cut(s) 742
EciI GGCGGA 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 352, 571
FaeI CATG 4 cut(s) 202, 251, 326, 529
FatI CATG 4 cut(s) 198, 247, 322, 525
Fnu4HI GCNGC 3 cut(s) 42, 133, 157
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 42, 133, 157
GluI GCNGC 3 cut(s) 42, 133, 157
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 3 cut(s) 44, 156, 339
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 4 cut(s) 202, 251, 326, 529
HinfI GANTC 4 cut(s) 69, 82, 494, 688
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 426
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 4 cut(s) 348, 518, 736, 748
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 4 cut(s) 262, 452, 658, 694
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 5 cut(s) 176, 364, 469, 529, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 156, 224
HpyF3I CTNAG 1 cut(s) 671
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 4 cut(s) 202, 251, 326, 529
Kpn2I TCCGGA 1 cut(s) 72
LmnI GCTCC 2 cut(s) 275, 430
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 135, 214
MaeIII GTNAC 1 cut(s) 250
MluCI AATT 9 cut(s) 166, 369, 374, 413, 420, 430, 508, 610, 750
MlyI GAGTC 1 cut(s) 697
MmeI TCCRAC 2 cut(s) 496, 759
MnlI CCTC 3 cut(s) 206, 258, 700
MroI TCCGGA 1 cut(s) 72
MseI TTAA 3 cut(s) 165, 741, 778
MslI CAYNNNNRTG 2 cut(s) 29, 530
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 354, 573
MvaI CCWGG 2 cut(s) 354, 573
MwoI GCNNNNNNNGC 3 cut(s) 132, 156, 224
NlaIII CATG 4 cut(s) 202, 251, 326, 529
NlaIV GGNNCC 2 cut(s) 217, 451
NspI RCATGY 1 cut(s) 251
OliI CACNNNNGTG 1 cut(s) 29
PciI ACATGT 1 cut(s) 247
PfeI GAWTC 3 cut(s) 69, 82, 494
PkrI GCNGC 3 cut(s) 43, 134, 158
PleI GAGTC 1 cut(s) 696
PpsI GAGTC 1 cut(s) 696
PscI ACATGT 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 165
Psp6I CCWGG 2 cut(s) 352, 571
PspGI CCWGG 2 cut(s) 352, 571
PspN4I GGNNCC 2 cut(s) 217, 451
RsaI GTAC 3 cut(s) 180, 387, 592
RsaNI GTAC 3 cut(s) 179, 386, 591
RseI CAYNNNNRTG 2 cut(s) 29, 530
SaqAI TTAA 3 cut(s) 165, 741, 778
SatI GCNGC 3 cut(s) 42, 133, 157
SchI GAGTC 1 cut(s) 697
ScrFI CCNGG 2 cut(s) 354, 573
SetI ASST 9 cut(s) 175, 217, 273, 295, 451, 598, 629, 646, 669
SfaNI GCATC 2 cut(s) 135, 214
SmiMI CAYNNNNRTG 2 cut(s) 29, 530
SmlI CTYRAG 2 cut(s) 262, 561
SmoI CTYRAG 2 cut(s) 262, 561
Sse9I AATT 9 cut(s) 166, 369, 374, 413, 420, 430, 508, 610, 750
SsiI CCGC 4 cut(s) 41, 66, 135, 157
StyD4I CCNGG 2 cut(s) 352, 571
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 655
TasI AATT 9 cut(s) 166, 369, 374, 413, 420, 430, 508, 610, 750
TatI WGTACW 1 cut(s) 385
TauI GCSGC 2 cut(s) 44, 159
TfiI GAWTC 3 cut(s) 69, 82, 494
Tru1I TTAA 3 cut(s) 165, 741, 778
Tru9I TTAA 3 cut(s) 165, 741, 778
TscAI CASTG 2 cut(s) 33, 226
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 453, 486, 503
TspGWI ACGGA 2 cut(s) 75, 674
TspRI CASTG 2 cut(s) 33, 226
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 4 cut(s) 369, 413, 508, 750
XceI RCATGY 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.