Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005315

Physical Location & Seq

Genomic Coordinates Reverse (-)

46612716 .. 46617405

Gene Structure 4690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGGGAAGCAGTAAGAGTGGCACGGTGGTGGTGGTGGCGGCCAATGAGAGAAAGCCAAGTGGCGGAATCCGGATTGGGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATAGGCTGCGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGCGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGACGCCTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTTTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGTACAAACAATGACAAAAATGATGACAAAATTTGGAATTGCTCCCAATTCACCAATCCTTCAAGGTGCCATTCCAAGTTCGTTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCCAAATTCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGCTTGCCTGGCTATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAGAGTGAAGTGGTATTGAAACACCAGCAAGTCATTGACGAGCTCACGGAGGAGAATGAGAAGCTTCGCCATATACTAGTGGAAGACCTGAAAACCTTGGTGAGCGTTCAAGGAGTATCATCTAGGTTCAAGGGTTACAAACCAATTAAAGAGACTATACAAGTAGAATCCCCATCACCTACCAACCAGTTGATGTGCAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

31.73

Weight (kDa)

9.08

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17540
fragaria_vesca	FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140
malus_domestica	MD00G1165000.v1.1 MD04G1050900.v1.1
prunus_persica	Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1
pyrus_communis	pycom04g04500 pycom06g04180
rosa_chinensis	RchiOBHm_Chr7g0205091
rosa_laevigata	RLG00000003402
rosa_multiflora	Rmu_sc0005112.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252580
rosa_rugosa	Rorug07G0087900 Rorug07G0088000 Rorug07G0095500.1
rosa_samantha	Rh7AG218600 Rh7BG215100 Rh7CG231700 Rh7DG226000
rosa_wichuraiana	Rw7G018910 Rw7G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 449
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	4 cut(s)	41, 66, 135, 157
AcoI	YGGCCR	2 cut(s)	42, 154
AcsI	RAATTY	3 cut(s)	369, 413, 508
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	2 cut(s)	216, 258
AfaI	GTAC	3 cut(s)	180, 387, 592
AfiI	CCNNNNNNNGG	2 cut(s)	65, 578
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	8 cut(s)	97, 374, 446, 600, 700, 727, 818, 838
AhlI	ACTAGT	1 cut(s)	784
AjnI	CCWGG	2 cut(s)	352, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	4 cut(s)	293, 627, 751, 772
AluI	AGCT	4 cut(s)	293, 627, 751, 772
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	854
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	3 cut(s)	42, 154, 337
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	3 cut(s)	369, 413, 508
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	426, 820, 876
BanI	GGYRCC	2 cut(s)	215, 449
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	3 cut(s)	526, 625, 889
BciT130I	CCWGG	2 cut(s)	354, 573
BcoDI	GTCTC	1 cut(s)	854
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	2 cut(s)	785, 831
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	3 cut(s)	42, 133, 157
BlsI	GCNGC	3 cut(s)	43, 134, 158
Bme1390I	CCNGG	2 cut(s)	354, 573
BmiI	GGNNCC	2 cut(s)	217, 451
BmrFI	CCNGG	2 cut(s)	354, 573
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	283, 546
BsaHI	GRCGYC	2 cut(s)	216, 258
BsaJI	CCNNGG	2 cut(s)	353, 804
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 578
Bse1I	ACTGG	5 cut(s)	121, 182, 632, 692, 895
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	354, 573
BseDI	CCNNGG	2 cut(s)	353, 804
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	2 cut(s)	65, 578
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	5 cut(s)	121, 182, 632, 692, 895
BseRI	GAGGAG	2 cut(s)	722, 773
BseXI	GCAGC	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	44, 156, 339
BshNI	GGYRCC	2 cut(s)	215, 449
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	65, 578
BsmAI	GTCTC	1 cut(s)	854
BsnI	GGCC	3 cut(s)	44, 156, 339
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp13I	TCCGGA	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	385
BspACI	CCGC	4 cut(s)	41, 66, 135, 157
BspANI	GGCC	3 cut(s)	44, 156, 339
BspCNI	CTCAG	1 cut(s)	684
BspEI	TCCGGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	217, 451
BspT107I	GGYRCC	2 cut(s)	215, 449
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	5 cut(s)	121, 182, 632, 692, 895
BssECI	CCNNGG	2 cut(s)	353, 804
BssNI	GRCGYC	2 cut(s)	216, 258
BssT1I	CCWWGG	1 cut(s)	804
Bst2UI	CCWGG	2 cut(s)	354, 573
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	2 cut(s)	216, 258
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	295, 569
BstDEI	CTNAG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstMAI	GTCTC	1 cut(s)	854
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 156, 224, 573
BstNI	CCWGG	2 cut(s)	354, 573
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	352, 571
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	44, 156, 339
BtsCI	GGATG	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	2 cut(s)	219, 913
Cac8I	GCNNGC	2 cut(s)	295, 569
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	179, 386, 591
CviAII	CATG	4 cut(s)	199, 248, 323, 526
CviQI	GTAC	3 cut(s)	179, 386, 591
DdeI	CTNAG	1 cut(s)	671
DinI	GGCGCC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	42, 154
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	753
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	751
EcoRII	CCWGG	2 cut(s)	352, 571
EcoT14I	CCWWGG	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	753
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	4 cut(s)	202, 251, 326, 529
FatI	CATG	4 cut(s)	198, 247, 322, 525
Fnu4HI	GCNGC	3 cut(s)	42, 133, 157
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	3 cut(s)	42, 133, 157
FspBI	CTAG	2 cut(s)	785, 831
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	42, 133, 157
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	44, 156, 339
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	2 cut(s)	216, 258
Hin1II	CATG	4 cut(s)	202, 251, 326, 529
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	5 cut(s)	69, 82, 494, 688, 875
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	426, 820, 876
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	348, 518
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	4 cut(s)	262, 452, 658, 694
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	176, 364, 469, 529, 557, 906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 156, 224, 573
HpyF3I	CTNAG	1 cut(s)	671
Hsp92I	GRCGYC	2 cut(s)	216, 258
Hsp92II	CATG	4 cut(s)	202, 251, 326, 529
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	275, 430
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	785, 831
MaeIII	GTNAC	2 cut(s)	250, 842
MboII	GAAGA	1 cut(s)	803
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	9 cut(s)	166, 369, 374, 413, 420, 430, 508, 610, 852
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	4 cut(s)	206, 258, 700, 751
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	2 cut(s)	165, 855
MslI	CAYNNNNRTG	2 cut(s)	29, 530
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	354, 573
MvaI	CCWGG	2 cut(s)	354, 573
MwoI	GCNNNNNNNGC	4 cut(s)	132, 156, 224, 573
NarI	GGCGCC	1 cut(s)	216
NlaIII	CATG	4 cut(s)	202, 251, 326, 529
NlaIV	GGNNCC	2 cut(s)	217, 451
NspI	RCATGY	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	29
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	69, 82, 494, 875
PkrI	GCNGC	3 cut(s)	43, 134, 158
PleI	GAGTC	1 cut(s)	696
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	696
PscI	ACATGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	352, 571
PspGI	CCWGG	2 cut(s)	352, 571
PspN4I	GGNNCC	2 cut(s)	217, 451
RsaI	GTAC	3 cut(s)	180, 387, 592
RsaNI	GTAC	3 cut(s)	179, 386, 591
RseI	CAYNNNNRTG	2 cut(s)	29, 530
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	165, 855
SatI	GCNGC	3 cut(s)	42, 133, 157
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	354, 573
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	29, 530
SmlI	CTYRAG	2 cut(s)	262, 561
SmoI	CTYRAG	2 cut(s)	262, 561
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	9 cut(s)	166, 369, 374, 413, 420, 430, 508, 610, 852
SsiI	CCGC	4 cut(s)	41, 66, 135, 157
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	2 cut(s)	785, 831
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	352, 571
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	655
TasI	AATT	9 cut(s)	166, 369, 374, 413, 420, 430, 508, 610, 852
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	2 cut(s)	44, 159
TfiI	GAWTC	4 cut(s)	69, 82, 494, 875
Tru1I	TTAA	2 cut(s)	165, 855
Tru9I	TTAA	2 cut(s)	165, 855
TscAI	CASTG	2 cut(s)	226, 913
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	2 cut(s)	486, 503
TspGWI	ACGGA	3 cut(s)	75, 674, 770
TspRI	CASTG	2 cut(s)	226, 913
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	3 cut(s)	369, 413, 508
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	2 cut(s)	785, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.