Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005315

Physical Location & Seq

Genomic Coordinates Reverse (-)

37575239 .. 37586531

Gene Structure 11293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1165000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGGGGGCAGCAACAGTAGCAAGAGCGGCGTCGTGGTGGTGACCAATGAGAGAAGGCCAAGTGGGGGAATCCGAATCCAGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACAGGCTTTGGCATAGGCTGCGGTGTTGGTATCGGTGTTGGCCGCCCCATAAATCTAGGTGCAATACCAGTACTGAATCAAGTCATGGGTGCTACAAGAGGTGCCACTGATGCATTATCTGGTGCTAGCAGACATGTAAACAACGCTTTGAGGAAGGTGGGAGCCAAGAACATTGAAGCGGGCATTGGATGTGGAGTTGGTATTGGTCATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGGTGTTGCAACAAATTCAGTTTCATTTTGTACAAGGAATGACAAAGATAATGACGAAGTTTGGAATTTCTCCCAATTTAGCCATTGGTCAAGGTACCCTCCCAAGTTCTTTGCAAAGTGCCATTGGAAATGTAAATGACCAGAGCCAAAATTCAATGGGAAGTAGCATGCCGTGGTCAACAAAACCACCAGACCATACATCTCAAAGTTTGCCTGGATATGGAAATAATGGTACTGGTTCTCCAGTTGATACACCTTTTGGTAGTCGAACAGAAAAAGTTCTCAGCAGTTTTCTTCAGAGTCCACTTCTGAAAGGAGAGGAGGACAGTGAACCAAATGAAGGGGCTGGACGCCTGAGGTCGGAGAACAAAATCCTTCAAATGATATTGAAACATCAGCAAATCATTGAAGAGCTGATGGAGGAGAACGATAAACTTCGCCACATACTGGTGGAAGACCTGAAAGTCTCACCTAGCAAGCTGCAAGCAAGTTATTCAAGTAAAAACAGATCTCCATGTACAGATTGTTTTGAGTGTCGAAGAAAACAAAGGAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

32.39

Weight (kDa)

9.62

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17540
fragaria_vesca	FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140 FvH4_5g20140
malus_domestica	MD00G1165000.v1.1 MD04G1050900.v1.1
prunus_persica	Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1 Prupe.5G059200_v2.0.a1
pyrus_communis	pycom04g04500 pycom06g04180
rosa_chinensis	RchiOBHm_Chr7g0205091
rosa_laevigata	RLG00000003402
rosa_multiflora	Rmu_sc0005112.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252580
rosa_rugosa	Rorug07G0087900 Rorug07G0088000 Rorug07G0095500.1
rosa_samantha	Rh7AG218600 Rh7BG215100 Rh7CG231700 Rh7DG226000
rosa_wichuraiana	Rw7G018910 Rw7G018950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	2 cut(s)	218, 452
AccB7I	CCANNNNNTGG	1 cut(s)	805
AccBSI	CCGCTC	1 cut(s)	30
AciI	CCGC	4 cut(s)	30, 138, 160, 296
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	372, 423, 508
AcuI	CTGAAG	2 cut(s)	371, 638
AcyI	GRCGYC	2 cut(s)	33, 709
AfaI	GTAC	5 cut(s)	189, 390, 454, 592, 877
AfiI	CCNNNNNNNGG	5 cut(s)	68, 578, 698, 718, 805
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	7 cut(s)	100, 293, 513, 737, 748, 767, 855
AjnI	CCWGG	2 cut(s)	355, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	2 cut(s)	772, 838
AluI	AGCT	2 cut(s)	772, 838
Alw26I	GTCTC	1 cut(s)	829
AoxI	GGCC	3 cut(s)	59, 157, 340
ApeKI	GCWGC	3 cut(s)	12, 135, 838
ApoI	RAATTY	3 cut(s)	372, 423, 508
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	55, 819
AsuNHI	GCTAGC	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	713
BanI	GGYRCC	2 cut(s)	218, 452
BbsI	GAAGAC	1 cut(s)	819
BbvI	GCAGC	3 cut(s)	24, 122, 825
BccI	CCATC	1 cut(s)	769
BceAI	ACGGC	1 cut(s)	514
BciT130I	CCWGG	2 cut(s)	357, 573
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	3 cut(s)	173, 243, 831
BglII	AGATCT	1 cut(s)	866
BisI	GCNGC	5 cut(s)	13, 31, 136, 160, 839
BlsI	GCNGC	5 cut(s)	14, 32, 137, 161, 840
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	357, 573
BmiI	GGNNCC	3 cut(s)	220, 280, 454
BmrFI	CCNGG	2 cut(s)	357, 573
BmsI	GCATC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	1 cut(s)	585
BsaHI	GRCGYC	2 cut(s)	33, 709
BsaJI	CCNNGG	2 cut(s)	356, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 578, 698, 718, 805
Bse1I	ACTGG	4 cut(s)	185, 598, 602, 810
Bse21I	CCTNAGG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	357, 573
BseDI	CCNNGG	2 cut(s)	356, 530
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	5 cut(s)	68, 578, 698, 718, 805
BseMII	CTCAG	2 cut(s)	655, 704
BseNI	ACTGG	4 cut(s)	185, 598, 602, 810
BseRI	GAGGAG	2 cut(s)	692, 794
BseXI	GCAGC	3 cut(s)	24, 122, 825
BshFI	GGCC	3 cut(s)	61, 159, 342
BshNI	GGYRCC	2 cut(s)	218, 452
BslI	CCNNNNNNNGG	5 cut(s)	68, 578, 698, 718, 805
BsmAI	GTCTC	1 cut(s)	829
BsnI	GGCC	3 cut(s)	61, 159, 342
Bsp1407I	TGTACA	2 cut(s)	388, 875
Bsp143I	GATC	1 cut(s)	866
BspACI	CCGC	4 cut(s)	30, 138, 160, 296
BspANI	GGCC	3 cut(s)	61, 159, 342
BspCNI	CTCAG	2 cut(s)	654, 705
BspLI	GGNNCC	3 cut(s)	220, 280, 454
BspOI	GCTAGC	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	762
BspT107I	GGYRCC	2 cut(s)	218, 452
BsrBI	CCGCTC	1 cut(s)	30
BsrGI	TGTACA	2 cut(s)	388, 875
BsrI	ACTGG	4 cut(s)	185, 598, 602, 810
BssECI	CCNNGG	2 cut(s)	356, 530
BssMI	GATC	1 cut(s)	866
BssNI	GRCGYC	2 cut(s)	33, 709
Bst2UI	CCWGG	2 cut(s)	357, 573
Bst4CI	ACNGT	2 cut(s)	20, 686
Bst6I	CTCTTC	1 cut(s)	762
BstACI	GRCGYC	2 cut(s)	33, 709
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstAUI	TGTACA	2 cut(s)	388, 875
BstC8I	GCNNGC	5 cut(s)	244, 298, 527, 836, 843
BstDEI	CTNAG	2 cut(s)	641, 713
BstDSI	CCRYGG	1 cut(s)	530
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	869
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	1 cut(s)	866
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 30, 135, 227
BstNI	CCWGG	2 cut(s)	357, 573
BstNSI	RCATGY	2 cut(s)	254, 529
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	355, 571
BstV1I	GCAGC	3 cut(s)	24, 122, 825
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
Bsu36I	CCTNAGG	1 cut(s)	713
BsuRI	GGCC	3 cut(s)	61, 159, 342
BtgI	CCRYGG	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	222, 691
Cac8I	GCNNGC	5 cut(s)	244, 298, 527, 836, 843
CseI	GACGC	2 cut(s)	22, 717
Csp6I	GTAC	5 cut(s)	188, 389, 453, 591, 876
CviAII	CATG	5 cut(s)	202, 251, 326, 526, 873
CviQI	GTAC	5 cut(s)	188, 389, 453, 591, 876
DdeI	CTNAG	2 cut(s)	641, 713
DpnI	GATC	1 cut(s)	868
DpnII	GATC	1 cut(s)	866
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Eco57I	CTGAAG	2 cut(s)	371, 638
Eco81I	CCTNAGG	1 cut(s)	713
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	355, 571
EcoT22I	ATGCAT	1 cut(s)	232
FaeI	CATG	5 cut(s)	205, 254, 329, 529, 876
FatI	CATG	5 cut(s)	201, 250, 325, 525, 872
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	5 cut(s)	13, 31, 136, 160, 839
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	5 cut(s)	13, 31, 136, 160, 839
FspBI	CTAG	3 cut(s)	173, 243, 831
GluI	GCNGC	5 cut(s)	13, 31, 136, 160, 839
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	61, 159, 342
HgaI	GACGC	2 cut(s)	22, 717
Hin1I	GRCGYC	2 cut(s)	33, 709
Hin1II	CATG	5 cut(s)	205, 254, 329, 529, 876
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	5 cut(s)	72, 78, 85, 193, 658
HphI	GGTGA	2 cut(s)	55, 819
Hpy166II	GTNNAC	5 cut(s)	93, 256, 537, 662, 689
Hpy188I	TCNGA	5 cut(s)	77, 351, 657, 669, 721
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	5 cut(s)	93, 256, 537, 662, 689
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	51, 265, 692, 743
HpyCH4III	ACNGT	2 cut(s)	20, 686
HpyCH4V	TGCA	5 cut(s)	179, 230, 367, 472, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 30, 135, 227
HpyF3I	CTNAG	2 cut(s)	641, 713
Hsp92I	GRCGYC	2 cut(s)	33, 709
Hsp92II	CATG	5 cut(s)	205, 254, 329, 529, 876
KpnI	GGTACC	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	866
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	3 cut(s)	24, 122, 825
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	173, 243, 831
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	868
MbiI	CCGCTC	1 cut(s)	30
MboI	GATC	1 cut(s)	866
MboII	GAAGA	4 cut(s)	644, 779, 824, 909
MflI	RGATCY	1 cut(s)	866
MluCI	AATT	4 cut(s)	372, 423, 433, 508
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	7 cut(s)	209, 261, 467, 670, 673, 708, 772
Mph1103I	ATGCAT	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	806
MspR9I	CCNGG	2 cut(s)	357, 573
MvaI	CCWGG	2 cut(s)	357, 573
MwoI	GCNNNNNNNGC	4 cut(s)	21, 30, 135, 227
NdeII	GATC	1 cut(s)	866
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	5 cut(s)	205, 254, 329, 529, 876
NlaIV	GGNNCC	3 cut(s)	220, 280, 454
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	254, 529
PaeI	GCATGC	1 cut(s)	529
PciI	ACATGT	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	72, 78, 85, 193
PflMI	CCANNNNNTGG	1 cut(s)	805
PkrI	GCNGC	5 cut(s)	14, 32, 137, 161, 840
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
PscI	ACATGT	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	355, 571
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	355, 571
PspN4I	GGNNCC	3 cut(s)	220, 280, 454
PsuI	RGATCY	1 cut(s)	866
RsaI	GTAC	5 cut(s)	189, 390, 454, 592, 877
RsaNI	GTAC	5 cut(s)	188, 389, 453, 591, 876
RseI	CAYNNNNRTG	1 cut(s)	806
SapI	GCTCTTC	1 cut(s)	762
SatI	GCNGC	5 cut(s)	13, 31, 136, 160, 839
Sau3AI	GATC	1 cut(s)	866
ScaI	AGTACT	1 cut(s)	189
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	357, 573
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	806
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	4 cut(s)	372, 423, 433, 508
SsiI	CCGC	4 cut(s)	30, 138, 160, 296
SspMI	CTAG	3 cut(s)	173, 243, 831
StyD4I	CCNGG	2 cut(s)	355, 571
TaaI	ACNGT	2 cut(s)	20, 686
TaqI	TCGA	2 cut(s)	625, 895
TasI	AATT	4 cut(s)	372, 423, 433, 508
TatI	WGTACW	3 cut(s)	187, 388, 875
TauI	GCSGC	2 cut(s)	33, 162
TfiI	GAWTC	4 cut(s)	72, 78, 85, 193
TscAI	CASTG	2 cut(s)	229, 691
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	3 cut(s)	12, 135, 838
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	371, 711
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	229, 691
Van91I	CCANNNNNTGG	1 cut(s)	805
XapI	RAATTY	3 cut(s)	372, 423, 508
XceI	RCATGY	2 cut(s)	254, 529
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	3 cut(s)	173, 243, 831
ZrmI	AGTACT	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.