Prupe.5G059200_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0005315
Physical Location & Seq
Reverse (-)
6378950 .. 6383406
4457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059200.2

Sequence Viewer

Length: 978 bp
ATGGAGGCCAGCAGCAGCAATAGTAGTAGCAAGAGTGGCTTGGTGGTGGCCAATGAGAGAAGGCCAAGTGGGGGAATCCGAATAGAGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACAGGCTTTGGCATAGGCTGCGGTGTTGGTATCGGTGTTGGTCGCCCCATAAATCTAGGTGCAATACCAGTACTAAATCAAGTCATGGGTGCCACACGAGGTGCTACTGATGCATTATCTGGCGTTAGCAGACATGTAAATAACTCTCTCTTATTCCCATGTATCATTCTTCAGTTGAGGAAGGTGGGAGCAAAGAACATTGAAGCAGGCATTGGATGTGGAGTTGGTATTGGCCATGGTTTTGGAGTTGGCCTTGCTGTGAAGCCAGGGGTGTTACATCAAATTCAATTTCATCTTTTACAAGGAATCACAAAGATGATGGTGAAGTTTGGAGTTGCTCCCAATTTAGCCATTGGTCAAGGTGCCATCCCAGGTTCTTTGCAAAGGGCCATAGGCATTGTAAATGATCCATCAAGCCAAAATCCAATGGGAAGTAGCATGCAGTTGGCTACAAAGCCACCAGACCATAAATCTCAAGGTTTACCTGGATATGGGAATACTGGTACTGCTTCAGCCTATGAAAATTTTACATCAAAAGGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACAGAAAAAGTTCTCAGCAGTTTTCTTCAGAATCCAGTTCTGAAAGGAGAGGAAAGTGAACCAAATGAAGCGGCTGGACGCTTGAGGTTGGAGAACAAAATGCTTCAAATGATATTGAAACACCAGCAAGTCATTGAAGAGCTCATGGAGGAAAATGAGAAGCTTCGCCATGTACTAATGGAAGACCTGAAAATACCACCTAGCAAGCTGCAAGCAAGTTCTTCAAGTAAAAACAAATCTCCATGTACAGATTGTTTTGAGTGTCGAAGAAAACAGAGAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

34.49

Weight (kDa)

9.62

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 482
AciI CCGC 2 cut(s) 141, 761
AclWI GGATC 1 cut(s) 521
AcoI YGGCCR 2 cut(s) 48, 352
AcsI RAATTY 2 cut(s) 402, 643
AcuI CTGAAG 3 cut(s) 275, 615, 701
AdeI CACNNNGTG 1 cut(s) 221
AfaI GTAC 4 cut(s) 192, 625, 864, 937
AfiI CCNNNNNNNGG 2 cut(s) 71, 611
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 7 cut(s) 103, 323, 407, 797, 808, 827, 915
AjnI CCWGG 3 cut(s) 385, 490, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 832, 853, 898
AluI AGCT 3 cut(s) 832, 853, 898
Alw21I GWGCWC 1 cut(s) 834
AlwI GGATC 1 cut(s) 521
AoxI GGCC 6 cut(s) 6, 48, 62, 352, 370, 507
ApeKI GCWGC 4 cut(s) 12, 15, 138, 898
ApoI RAATTY 2 cut(s) 402, 643
Asp700I GAANNNNTTC 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 454
BalI TGGCCA 2 cut(s) 50, 354
BanI GGYRCC 2 cut(s) 209, 482
BanII GRGCYC 1 cut(s) 834
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 4 cut(s) 24, 27, 125, 885
BccI CCATC 3 cut(s) 433, 494, 538
BciT130I CCWGG 3 cut(s) 387, 492, 606
BfaI CTAG 2 cut(s) 176, 891
BisI GCNGC 5 cut(s) 13, 16, 139, 762, 899
BlsI GCNGC 5 cut(s) 14, 17, 140, 763, 900
BmcAI AGTACT 1 cut(s) 192
Bme1390I CCNGG 3 cut(s) 387, 492, 606
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 211, 484
BmrFI CCNGG 3 cut(s) 387, 492, 606
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 879
BpmI CTGGAG 1 cut(s) 648
BpuEI CTTGAG 2 cut(s) 579, 793
BsaJI CCNNGG 3 cut(s) 355, 386, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 611
Bse1I ACTGG 4 cut(s) 188, 625, 665, 725
BseBI CCWGG 3 cut(s) 387, 492, 606
BseDI CCNNGG 3 cut(s) 355, 386, 490
BseGI GGATG 2 cut(s) 341, 486
BseLI CCNNNNNNNGG 2 cut(s) 71, 611
BseMII CTCAG 1 cut(s) 718
BseNI ACTGG 4 cut(s) 188, 625, 665, 725
BseXI GCAGC 4 cut(s) 24, 27, 125, 885
BshFI GGCC 6 cut(s) 8, 50, 64, 354, 372, 509
BshNI GGYRCC 2 cut(s) 209, 482
BsiHKAI GWGCWC 1 cut(s) 834
BslI CCNNNNNNNGG 2 cut(s) 71, 611
BsnI GGCC 6 cut(s) 8, 50, 64, 354, 372, 509
Bsp1286I GDGCHC 1 cut(s) 834
Bsp1407I TGTACA 1 cut(s) 935
Bsp143I GATC 1 cut(s) 526
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 141, 761
BspANI GGCC 6 cut(s) 8, 50, 64, 354, 372, 509
BspCNI CTCAG 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 211, 484
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 822
BspT107I GGYRCC 2 cut(s) 209, 482
BsrGI TGTACA 1 cut(s) 935
BsrI ACTGG 4 cut(s) 188, 625, 665, 725
BssECI CCNNGG 3 cut(s) 355, 386, 490
BssMI GATC 1 cut(s) 526
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 387, 492, 606
Bst6I CTCTTC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 935
BstC8I GCNNGC 5 cut(s) 10, 328, 560, 896, 903
BstDEI CTNAG 1 cut(s) 704
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 2 cut(s) 341, 486
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 3 cut(s) 36, 138, 230
BstNI CCWGG 3 cut(s) 387, 492, 606
BstNSI RCATGY 2 cut(s) 257, 562
BstSCI CCNGG 3 cut(s) 385, 490, 604
BstV1I GCAGC 4 cut(s) 24, 27, 125, 885
BstV2I GAAGAC 1 cut(s) 879
BstXI CCANNNNNNTGG 1 cut(s) 362
BsuRI GGCC 6 cut(s) 8, 50, 64, 354, 372, 509
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 2 cut(s) 341, 486
Cac8I GCNNGC 5 cut(s) 10, 328, 560, 896, 903
Cfr13I GGNCC 1 cut(s) 507
CseI GACGC 1 cut(s) 777
Csp6I GTAC 4 cut(s) 191, 624, 863, 936
CviAII CATG 8 cut(s) 205, 254, 279, 356, 559, 835, 860, 933
CviQI GTAC 4 cut(s) 191, 624, 863, 936
DdeI CTNAG 1 cut(s) 704
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
DraIII CACNNNGTG 1 cut(s) 221
EaeI YGGCCR 2 cut(s) 48, 352
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 834
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 3 cut(s) 275, 615, 701
EcoICRI GAGCTC 1 cut(s) 832
EcoRII CCWGG 3 cut(s) 385, 490, 604
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 8 cut(s) 208, 257, 282, 359, 562, 838, 863, 936
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 8 cut(s) 204, 253, 278, 355, 558, 834, 859, 932
Fnu4HI GCNGC 5 cut(s) 13, 16, 139, 762, 899
FokI GGATG 2 cut(s) 348, 473
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 5 cut(s) 13, 16, 139, 762, 899
FspBI CTAG 2 cut(s) 176, 891
GluI GCNGC 5 cut(s) 13, 16, 139, 762, 899
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 6 cut(s) 8, 50, 64, 354, 372, 509
HgaI GACGC 1 cut(s) 777
Hin1II CATG 8 cut(s) 208, 257, 282, 359, 562, 838, 863, 936
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 4 cut(s) 75, 88, 426, 721
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 3 cut(s) 96, 602, 749
Hpy188I TCNGA 3 cut(s) 80, 720, 732
Hpy8I GTNNAC 3 cut(s) 96, 602, 749
HpyAV CCTTC 2 cut(s) 54, 295
HpyCH4V TGCA 5 cut(s) 182, 233, 502, 562, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 138, 230
HpyF3I CTNAG 1 cut(s) 704
Hsp92II CATG 8 cut(s) 208, 257, 282, 359, 562, 838, 863, 936
Kzo9I GATC 1 cut(s) 526
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 2 cut(s) 308, 463
Lsp1109I GCAGC 4 cut(s) 24, 27, 125, 885
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 176, 891
MaeIII GTNAC 1 cut(s) 393
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 6 cut(s) 281, 707, 839, 884, 903, 969
MhlI GDGCHC 1 cut(s) 834
MlsI TGGCCA 2 cut(s) 50, 354
MluCI AATT 4 cut(s) 402, 407, 463, 643
MluNI TGGCCA 2 cut(s) 50, 354
MmeI TCCRAC 1 cut(s) 759
MnlI CCTC 5 cut(s) 212, 291, 733, 768, 832
Mox20I TGGCCA 2 cut(s) 50, 354
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 699
MscI TGGCCA 2 cut(s) 50, 354
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 2 cut(s) 50, 354
MspR9I CCNGG 3 cut(s) 387, 492, 606
MvaI CCWGG 3 cut(s) 387, 492, 606
MwoI GCNNNNNNNGC 3 cut(s) 36, 138, 230
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 526
NlaIII CATG 8 cut(s) 208, 257, 282, 359, 562, 838, 863, 936
NlaIV GGNNCC 2 cut(s) 211, 484
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 2 cut(s) 257, 562
PaeI GCATGC 1 cut(s) 562
PciI ACATGT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 4 cut(s) 75, 88, 426, 721
PkrI GCNGC 5 cut(s) 14, 17, 140, 763, 900
PscI ACATGT 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 834
Psp6I CCWGG 3 cut(s) 385, 490, 604
PspGI CCWGG 3 cut(s) 385, 490, 604
PspN4I GGNNCC 2 cut(s) 211, 484
PspPI GGNCC 1 cut(s) 507
RsaI GTAC 4 cut(s) 192, 625, 864, 937
RsaNI GTAC 4 cut(s) 191, 624, 863, 936
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 1 cut(s) 834
SapI GCTCTTC 1 cut(s) 822
SatI GCNGC 5 cut(s) 13, 16, 139, 762, 899
Sau3AI GATC 1 cut(s) 526
Sau96I GGNCC 1 cut(s) 507
ScaI AGTACT 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 387, 492, 606
SduI GDGCHC 1 cut(s) 834
SfaNI GCATC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 594, 772
SmoI CTYRAG 2 cut(s) 594, 772
SphI GCATGC 1 cut(s) 562
Sse9I AATT 4 cut(s) 402, 407, 463, 643
SsiI CCGC 2 cut(s) 141, 761
SspMI CTAG 2 cut(s) 176, 891
SstI GAGCTC 1 cut(s) 834
StyD4I CCNGG 3 cut(s) 385, 490, 604
StyI CCWWGG 1 cut(s) 355
TaqI TCGA 2 cut(s) 688, 955
TasI AATT 4 cut(s) 402, 407, 463, 643
TatI WGTACW 3 cut(s) 190, 862, 935
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 4 cut(s) 75, 88, 426, 721
TseI GCWGC 4 cut(s) 12, 15, 138, 898
TspDTI ATGAA 3 cut(s) 401, 654, 771
TspGWI ACGGA 1 cut(s) 81
XapI RAATTY 2 cut(s) 402, 643
XceI RCATGY 2 cut(s) 257, 562
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 2 cut(s) 176, 891
ZrmI AGTACT 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.