Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Forward (+)

9865103 .. 9867022

Gene Structure 1920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAGTTTTCAAGATTTAGAGGCGGGAAGAGGAAGATCATTAGCTTCTTCAAGGAACATCAATGGTGGTGGTAGTAGACAAGACACGACTCAAGATGTTGCTTCTGGTATATTTCAGATCAATACAAGTGTTTCCACTTTCCATCGTCTTGTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAATCAAAAGAAGAAGATTGTGGATGCTAAGCTTGCAAAGGACTTTCAAGCTGTGTTGAAAGAGTTTCAAAAGGCTCAGCGTCTTGCTGCTGAAAGAGAAACCGTATATGCTCCTCTTGTCCACAAGCCATCTCTTCCCTCAAGCTACACATCCAGTGAGATAGATGTGAATGGAGATAAGCATCCAGAGCAGCGTGCCCTTCTTGTGGAATCAAAAAGACAAGAACTTGTACTGTTGGACAATGAGATTGCGTTCAATGAGGCTGTTATTGAGGAAAGAGAGCAAGGGATACAAGAAATTCAGCAGCAAATTGGCGAGGTGCACGAGATCTTCAAAGACTTGGCAGTGTTGGTGCACGATCAAGGAAACATGATAGATGATATTGGTACTCACATCGATAACTCTTACGCTGCAACTGCCCAAGGAAAATCCCATCTCGTAAGGCATCAAAGACACAAAGATCAAATTCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

255

Amino Acids

28.6

Weight (kDa)

6.42

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	30 - 165	3.5e-36	Syntaxin-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	588, 756
AfaI	GTAC	3 cut(s)	166, 522, 679
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	7 cut(s)	11, 51, 338, 349, 359, 547, 625
AluBI	AGCT	8 cut(s)	44, 187, 199, 248, 263, 322, 341, 435
AluI	AGCT	8 cut(s)	44, 187, 199, 248, 263, 322, 341, 435
Alw21I	GWGCWC	3 cut(s)	189, 615, 648
Alw44I	GTGCAC	2 cut(s)	611, 644
ApaLI	GTGCAC	2 cut(s)	611, 644
ApeKI	GCWGC	5 cut(s)	199, 377, 481, 595, 701
ApoI	RAATTY	2 cut(s)	588, 756
BaeGI	GKGCMC	3 cut(s)	490, 615, 648
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	614
Bbv12I	GWGCWC	3 cut(s)	189, 615, 648
BbvI	GCAGC	5 cut(s)	186, 364, 493, 607, 688
BccI	CCATC	3 cut(s)	150, 427, 732
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	573
BglII	AGATCT	1 cut(s)	618
BisI	GCNGC	5 cut(s)	200, 378, 482, 596, 702
BlpI	GCTNAGC	2 cut(s)	318, 366
BlsI	GCNGC	5 cut(s)	201, 379, 483, 597, 703
BmsI	GCATC	3 cut(s)	304, 481, 745
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu1102I	GCTNAGC	2 cut(s)	318, 366
BpuEI	CTTGAG	2 cut(s)	75, 415
Bsa29I	ATCGAT	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	712
BseGI	GGATG	3 cut(s)	319, 440, 472
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	3 cut(s)	174, 202, 380
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	393
BseSI	GKGCMC	3 cut(s)	490, 615, 648
BseXI	GCAGC	5 cut(s)	186, 364, 493, 607, 688
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	3 cut(s)	189, 615, 648
BslI	CCNNNNNNNGG	1 cut(s)	496
Bsp1286I	GDGCHC	4 cut(s)	189, 490, 615, 648
Bsp143I	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
Bsp1720I	GCTNAGC	2 cut(s)	318, 366
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	3 cut(s)	175, 201, 379
BspDI	ATCGAT	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	712
Bst2BI	CACGAG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	228, 394, 525
Bst6I	CTCTTC	2 cut(s)	22, 429
BstC8I	GCNNGC	2 cut(s)	324, 486
BstDEI	CTNAG	4 cut(s)	183, 188, 318, 366
BstF5I	GGATG	3 cut(s)	319, 440, 472
BstKTI	GATC	6 cut(s)	38, 120, 277, 621, 652, 754
BstMBI	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 478, 707
BstSLI	GKGCMC	3 cut(s)	490, 615, 648
BstV1I	GCAGC	5 cut(s)	186, 364, 493, 607, 688
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
Bsu15I	ATCGAT	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	573
BsuTUI	ATCGAT	1 cut(s)	687
BtsCI	GGATG	3 cut(s)	319, 440, 472
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	451, 642
Cac8I	GCNNGC	2 cut(s)	324, 486
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	3 cut(s)	165, 521, 678
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	1 cut(s)	661
CviQI	GTAC	3 cut(s)	165, 521, 678
DdeI	CTNAG	4 cut(s)	183, 188, 318, 366
DpnI	GATC	6 cut(s)	37, 119, 276, 620, 651, 753
DpnII	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
Eam1104I	CTCTTC	2 cut(s)	22, 429
EarI	CTCTTC	2 cut(s)	22, 429
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	1 cut(s)	664
FaiI	YATR	7 cut(s)	110, 204, 217, 219, 397, 399, 662
FatI	CATG	1 cut(s)	660
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	5 cut(s)	200, 378, 482, 596, 702
FokI	GGATG	3 cut(s)	326, 427, 459
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	5 cut(s)	200, 378, 482, 596, 702
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	5 cut(s)	200, 378, 482, 596, 702
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	88, 500
Hpy166II	GTNNAC	4 cut(s)	77, 412, 613, 646
Hpy188I	TCNGA	3 cut(s)	117, 191, 767
Hpy188III	TCNNGA	3 cut(s)	11, 92, 476
Hpy8I	GTNNAC	4 cut(s)	77, 412, 613, 646
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	3 cut(s)	228, 394, 525
HpyCH4V	TGCA	5 cut(s)	202, 326, 613, 646, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 478, 707
HpyF3I	CTNAG	4 cut(s)	183, 188, 318, 366
Hsp92II	CATG	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	4 cut(s)	90, 195, 457, 489
Lsp1109I	GCAGC	5 cut(s)	186, 364, 493, 607, 688
LweI	GCATC	3 cut(s)	304, 481, 745
MaeI	CTAG	1 cut(s)	264
MalI	GATC	6 cut(s)	37, 119, 276, 620, 651, 753
MboI	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
MboII	GAAGA	8 cut(s)	39, 39, 45, 313, 316, 416, 613, 752
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	4 cut(s)	189, 490, 615, 648
MluCI	AATT	3 cut(s)	588, 600, 756
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	8 cut(s)	13, 23, 278, 414, 439, 544, 556, 601
MseI	TTAA	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	323, 478, 707
NdeII	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
NlaIII	CATG	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	201, 379, 483, 597, 703
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	618
RsaI	GTAC	3 cut(s)	166, 522, 679
RsaNI	GTAC	3 cut(s)	165, 521, 678
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	5 cut(s)	200, 378, 482, 596, 702
Sau3AI	GATC	6 cut(s)	35, 117, 274, 618, 649, 751
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	4 cut(s)	189, 490, 615, 648
SfaNI	GCATC	3 cut(s)	304, 481, 745
SmlI	CTYRAG	2 cut(s)	90, 430
SmoI	CTYRAG	2 cut(s)	90, 430
Sse9I	AATT	3 cut(s)	588, 600, 756
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	3 cut(s)	228, 394, 525
TaqI	TCGA	1 cut(s)	687
TasI	AATT	3 cut(s)	588, 600, 756
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	451, 642
TseI	GCWGC	5 cut(s)	199, 377, 481, 595, 701
TspRI	CASTG	2 cut(s)	451, 642
VneI	GTGCAC	2 cut(s)	611, 644
XapI	RAATTY	2 cut(s)	588, 756
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.