Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

41869275 .. 41872255

Gene Structure 2981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTGCGGCCACCAGCTTCCGTTCCGTAGCTTCCACCAGAACAGACAACCGCACCGAATCAATCACACGGAGCGCACCTTCTCTTTTCTGTTACACCCGAAAAACAAAAACCTTTCCTTTTCTTCGCCTCCTGACTCTTTTTCTCTCTCTCCTGAAAGAGATCATCATTCTGATGTTGATGGAAGACAGAAGGTTGCAGATGCTAAGCTTGCAAAAGATTTTCAAGTGGTACTGAGAGATTTTCAGAAAGCTCAACGACTTTCAGCTGAGAGGGAAACGGCATATGCTCCTTTTGTTCCCCAGGCTGTTCTTCCATCAAGCTACACTGCTAGTGAGATAGATGTAACCTCAGATAAGAATTCAGAACAGCGTGCTCTCCTTGTGGAATCGAGAAGACAGGAGGTCTTGCTATTAGACAATGAAATTGCCTTTAACGAGGCTATCATCGAGGAAAGAGAGCAAGGAATACAAGAGATCCAGCAGCAAATTGGGGAAGTGAATGAGATTTTTAAAGATCTGGCTATATTGGTTCATGAACAAGGGACAATGATCGAGGATATCGACACTAATGTTGAGAGTGCTCACGCTGCAACTGCCCAGGCAAAGTCCCACCTTGCGAAGGCCTCAAAGACCCAGAGATCAAACTCATCTCTGACTTGCTTGCTGTTGGTAATATTTGGAATCGTGCTTCTCATTGTGATAATAGTACTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

240

Amino Acids

26.88

Weight (kDa)

5.8

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	57 - 131	1.9e-11	Syntaxin-like protein
SNARE	PF05739	182 - 234	2.3e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	6, 50
AclWI	GGATC	1 cut(s)	469
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	2 cut(s)	231, 708
AfiI	CCNNNNNNNGG	1 cut(s)	619
AgsI	TTSAA	1 cut(s)	224
AhdI	GACNNNNNGTC	1 cut(s)	401
AjnI	CCWGG	2 cut(s)	300, 597
AluBI	AGCT	7 cut(s)	16, 30, 208, 251, 266, 321, 716
AluI	AGCT	7 cut(s)	16, 30, 208, 251, 266, 321, 716
Alw21I	GWGCWC	2 cut(s)	376, 583
AlwI	GGATC	1 cut(s)	469
AoxI	GGCC	2 cut(s)	7, 621
ApeKI	GCWGC	3 cut(s)	481, 587, 713
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	190, 400
Bbv12I	GWGCWC	2 cut(s)	376, 583
BbvI	GCAGC	2 cut(s)	493, 574
BccI	CCATC	2 cut(s)	173, 322
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	2 cut(s)	302, 599
BfaI	CTAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	4 cut(s)	7, 482, 588, 714
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	4 cut(s)	8, 483, 589, 715
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	2 cut(s)	302, 599
BmeRI	GACNNNNNGTC	1 cut(s)	401
BmrFI	CCNGG	2 cut(s)	302, 599
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	2 cut(s)	190, 400
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	300, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	302, 599
BseDI	CCNNGG	2 cut(s)	300, 597
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMII	CTCAG	3 cut(s)	224, 258, 363
BseXI	GCAGC	2 cut(s)	493, 574
BshFI	GGCC	2 cut(s)	9, 623
BsiHKAI	GWGCWC	2 cut(s)	376, 583
BslFI	GGGAC	2 cut(s)	556, 592
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	556, 592
BsnI	GGCC	2 cut(s)	9, 623
Bsp1286I	GDGCHC	2 cut(s)	376, 583
Bsp143I	GATC	5 cut(s)	160, 474, 514, 549, 638
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	6, 50
BspANI	GGCC	2 cut(s)	9, 623
BspCNI	CTCAG	3 cut(s)	225, 259, 362
BspHI	TCATGA	1 cut(s)	532
BspPI	GGATC	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	300, 597
BssMI	GATC	5 cut(s)	160, 474, 514, 549, 638
Bst2UI	CCWGG	2 cut(s)	302, 599
BstC8I	GCNNGC	3 cut(s)	210, 372, 662
BstDEI	CTNAG	4 cut(s)	204, 233, 267, 349
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	5 cut(s)	163, 477, 517, 552, 641
BstMBI	GATC	5 cut(s)	160, 474, 514, 549, 638
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 587, 593
BstNI	CCWGG	2 cut(s)	302, 599
BstSCI	CCNGG	2 cut(s)	300, 597
BstV1I	GCAGC	2 cut(s)	493, 574
BstV2I	GAAGAC	2 cut(s)	190, 400
BstX2I	RGATCY	2 cut(s)	474, 514
BstYI	RGATCY	2 cut(s)	474, 514
BsuRI	GGCC	2 cut(s)	9, 623
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	3 cut(s)	210, 372, 662
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	230, 707
CviAII	CATG	1 cut(s)	533
CviQI	GTAC	2 cut(s)	230, 707
DdeI	CTNAG	4 cut(s)	204, 233, 267, 349
DpnI	GATC	5 cut(s)	162, 476, 516, 551, 640
DpnII	GATC	5 cut(s)	160, 474, 514, 549, 638
DraI	TTTAAA	1 cut(s)	511
DriI	GACNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	7
Eam1105I	GACNNNNNGTC	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	623
Eco32I	GATATC	1 cut(s)	559
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	300, 597
EcoRV	GATATC	1 cut(s)	559
FaeI	CATG	1 cut(s)	536
FaiI	YATR	4 cut(s)	283, 285, 524, 534
FaqI	GGGAC	2 cut(s)	556, 592
FatI	CATG	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	7, 482, 588, 714
Fsp4HI	GCNGC	4 cut(s)	7, 482, 588, 714
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	7, 482, 588, 714
HaeIII	GGCC	2 cut(s)	9, 623
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	536
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	4 cut(s)	57, 134, 386, 681
Hpy188I	TCNGA	5 cut(s)	172, 246, 352, 364, 654
Hpy188III	TCNNGA	4 cut(s)	131, 152, 390, 533
HpyAV	CCTTC	3 cut(s)	88, 184, 613
HpyCH4V	TGCA	4 cut(s)	197, 212, 590, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 587, 593
HpyF3I	CTNAG	4 cut(s)	204, 233, 267, 349
Hsp92II	CATG	1 cut(s)	536
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	160, 474, 514, 549, 638
LmnI	GCTCC	2 cut(s)	70, 292
Lsp1109I	GCAGC	2 cut(s)	493, 574
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	90, 343
MalI	GATC	5 cut(s)	162, 476, 516, 551, 640
MboI	GATC	5 cut(s)	160, 474, 514, 549, 638
MboII	GAAGA	4 cut(s)	114, 195, 302, 405
MflI	RGATCY	2 cut(s)	474, 514
MhlI	GDGCHC	2 cut(s)	376, 583
MluCI	AATT	3 cut(s)	358, 423, 486
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	138, 264, 358, 394, 430, 442, 547, 634
MseI	TTAA	3 cut(s)	432, 510, 718
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	302, 599
MvaI	CCWGG	2 cut(s)	302, 599
MwoI	GCNNNNNNNGC	3 cut(s)	209, 587, 593
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	160, 474, 514, 549, 638
NlaIII	CATG	1 cut(s)	536
PagI	TCATGA	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	57, 386, 681
PkrI	GCNGC	4 cut(s)	8, 483, 589, 715
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	300, 597
PspGI	CCWGG	2 cut(s)	300, 597
PsuI	RGATCY	2 cut(s)	474, 514
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	231, 708
RsaNI	GTAC	2 cut(s)	230, 707
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	432, 510, 718
SatI	GCNGC	4 cut(s)	7, 482, 588, 714
Sau3AI	GATC	5 cut(s)	160, 474, 514, 549, 638
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	302, 599
SduI	GDGCHC	2 cut(s)	376, 583
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	358, 423, 486
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	2 cut(s)	6, 50
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	623
StyD4I	CCNGG	2 cut(s)	300, 597
TaqI	TCGA	4 cut(s)	389, 447, 552, 561
TasI	AATT	3 cut(s)	358, 423, 486
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	57, 386, 681
Tru1I	TTAA	3 cut(s)	432, 510, 718
Tru9I	TTAA	3 cut(s)	432, 510, 718
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	3 cut(s)	481, 587, 713
TspDTI	ATGAA	3 cut(s)	435, 521, 549
TspGWI	ACGGA	3 cut(s)	9, 14, 83
TspRI	CASTG	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.