Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509339.1

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

636 .. 3563

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ggaagacagaaggttgcagatgctaagcttgcaaaagattttcaagcggtactgagagattttcagaaagctcaacgactttcagctgagagggaaacggcatatgctccttttgttccccaggctgttcttccatcaagctacactgctagtgagataaatgtaacctcagataagaatccagaacagcgtgctctccttgtggaatcgagaagacaggaggtcttgctattagacaatgaaattgcctttaatgaggctatcattgaggaaagagaacaaggaatacaagagatccagcagcaaattggagaagtgaatgagatttttaaagatctggctattctggttcatgaacaagggaccatgatcgaggatattgactctaatattgagagttctcatgctgcaactgcccaggcaaagtcccaccttgtgaaggcctcaaagactcagagatcaaactcgtctctgacttgcttgctgttggtaatatttggaatcgtgcttctcattgtgataatagtacttgcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

179

Amino Acids

19.82

Weight (kDa)

5.03

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	289
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	51, 528
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	44
AhdI	GACNNNNNGTC	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	120, 417
AluBI	AGCT	5 cut(s)	28, 71, 86, 141, 536
AluI	AGCT	5 cut(s)	28, 71, 86, 141, 536
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	3 cut(s)	301, 407, 533
AspS9I	GGNCC	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	10, 220
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	313, 394
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	122, 419
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	150
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	3 cut(s)	302, 408, 534
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	3 cut(s)	303, 409, 535
BmcAI	AGTACT	1 cut(s)	528
Bme1390I	CCNGG	2 cut(s)	122, 419
Bme18I	GGWCC	1 cut(s)	363
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	122, 419
BmsI	GCATC	1 cut(s)	10
BpiI	GAAGAC	2 cut(s)	10, 220
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	120, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	2 cut(s)	122, 419
BseDI	CCNNGG	2 cut(s)	120, 417
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	4 cut(s)	44, 78, 183, 467
BseXI	GCAGC	2 cut(s)	313, 394
BshFI	GGCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	376, 412
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	2 cut(s)	376, 412
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	294, 334, 369, 458
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	4 cut(s)	45, 79, 182, 466
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	120, 417
BssMI	GATC	4 cut(s)	294, 334, 369, 458
Bst2UI	CCWGG	2 cut(s)	122, 419
BstC8I	GCNNGC	3 cut(s)	30, 192, 482
BstDEI	CTNAG	5 cut(s)	24, 53, 87, 169, 453
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstKTI	GATC	4 cut(s)	297, 337, 372, 461
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	4 cut(s)	294, 334, 369, 458
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 413
BstNI	CCWGG	2 cut(s)	122, 419
BstSCI	CCNGG	2 cut(s)	120, 417
BstV1I	GCAGC	2 cut(s)	313, 394
BstV2I	GAAGAC	2 cut(s)	10, 220
BstX2I	RGATCY	2 cut(s)	294, 334
BstYI	RGATCY	2 cut(s)	294, 334
BsuRI	GGCC	1 cut(s)	443
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	30, 192, 482
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	50, 527
CviAII	CATG	3 cut(s)	353, 367, 404
CviJI	RGCY	9 cut(s)	28, 71, 86, 125, 141, 260, 341, 443, 536
CviKI_1	RGCY	9 cut(s)	28, 71, 86, 125, 141, 260, 341, 443, 536
CviQI	GTAC	2 cut(s)	50, 527
DdeI	CTNAG	5 cut(s)	24, 53, 87, 169, 453
DpnI	GATC	4 cut(s)	296, 336, 371, 460
DpnII	GATC	4 cut(s)	294, 334, 369, 458
DraI	TTTAAA	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	436
DriI	GACNNNNNGTC	1 cut(s)	221
Eam1105I	GACNNNNNGTC	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	120, 417
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	3 cut(s)	356, 370, 407
FaiI	YATR	5 cut(s)	103, 105, 354, 368, 405
FaqI	GGGAC	2 cut(s)	376, 412
FatI	CATG	3 cut(s)	352, 366, 403
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	302, 408, 534
Fsp4HI	GCNGC	3 cut(s)	302, 408, 534
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	3 cut(s)	302, 408, 534
HaeIII	GGCC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	356, 370, 407
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	5 cut(s)	178, 206, 383, 451, 501
Hpy188I	TCNGA	4 cut(s)	66, 172, 456, 474
Hpy188III	TCNNGA	3 cut(s)	182, 210, 353
HpyAV	CCTTC	2 cut(s)	4, 433
HpyCH4V	TGCA	4 cut(s)	17, 32, 410, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 413
HpyF3I	CTNAG	5 cut(s)	24, 53, 87, 169, 453
Hsp92II	CATG	3 cut(s)	356, 370, 407
Kzo9I	GATC	4 cut(s)	294, 334, 369, 458
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	107, 134, 195, 203, 311, 323, 332, 404, 431
Lsp1109I	GCAGC	2 cut(s)	313, 394
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	4 cut(s)	296, 336, 371, 460
MboI	GATC	4 cut(s)	294, 334, 369, 458
MboII	GAAGA	3 cut(s)	15, 122, 225
MflI	RGATCY	2 cut(s)	294, 334
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	243, 306
MlyI	GAGTC	2 cut(s)	377, 445
MnlI	CCTC	7 cut(s)	84, 178, 214, 250, 262, 367, 454
MseI	TTAA	3 cut(s)	252, 330, 538
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	122, 419
MvaI	CCWGG	2 cut(s)	122, 419
MwoI	GCNNNNNNNGC	2 cut(s)	29, 413
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	4 cut(s)	294, 334, 369, 458
NlaIII	CATG	3 cut(s)	356, 370, 407
NlaIV	GGNNCC	1 cut(s)	364
PagI	TCATGA	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	178, 206, 501
PkrI	GCNGC	3 cut(s)	303, 409, 535
PleI	GAGTC	2 cut(s)	377, 445
PpsI	GAGTC	2 cut(s)	377, 445
Psp6I	CCWGG	2 cut(s)	120, 417
PspGI	CCWGG	2 cut(s)	120, 417
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	363
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PsuI	RGATCY	2 cut(s)	294, 334
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	51, 528
RsaNI	GTAC	2 cut(s)	50, 527
SaqAI	TTAA	3 cut(s)	252, 330, 538
SatI	GCNGC	3 cut(s)	302, 408, 534
Sau3AI	GATC	4 cut(s)	294, 334, 369, 458
Sau96I	GGNCC	1 cut(s)	363
ScaI	AGTACT	1 cut(s)	528
SchI	GAGTC	2 cut(s)	377, 445
ScrFI	CCNGG	2 cut(s)	122, 419
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	9 cut(s)	15, 30, 73, 88, 143, 170, 225, 435, 538
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	363
Sse9I	AATT	2 cut(s)	243, 306
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	2 cut(s)	391, 495
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	120, 417
TaqI	TCGA	2 cut(s)	209, 372
TasI	AATT	2 cut(s)	243, 306
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	3 cut(s)	178, 206, 501
Tru1I	TTAA	3 cut(s)	252, 330, 538
Tru9I	TTAA	3 cut(s)	252, 330, 538
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	3 cut(s)	301, 407, 533
TspDTI	ATGAA	3 cut(s)	255, 341, 369
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	363
XagI	CCTNNNNNAGG	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.