Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

19012021 .. 19014110

Gene Structure 2090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGTTTTCAAGATTTAGAATCAGGAAGAGGAAGATCAACGAGGAAATTCAATGGTGGTCGACAAGATTCGACACAAGCCGTTGCTTCTGGAATATTCCAGATCAATACCGGAGTCTCCACGTTTCAGCGACTCGTTAACACACTTGGTACTCCCAAAGATACACCGGAGCTCCGGGAGAAGCTGCACAAGACAAGGTTGCATATTGGACAGCTTGTGAAGGATACTTCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGCGGTGTCAATCCAAGTAAGAAGATTGCAGATGCTAAGCTTGCAAGGGACTTTCAAGCTGTTTTAAAAGAGTTTCAGAAAGCTCAACAAACTGCTGCTGAAAGAGAAACCACTTATACTCCTTTCGTGCCTCAATCTGCTCTTCCCTCTAGCTATACGGCGGGTGAGGTGGATAAGGTACCGGAACAGCGGGCACAACTTCAGGAGTCGAAAAGACAAGAACTTGTATTGTTAGACAACGAGATTGCATTCAACGAGGCTGTGATTGAAGAAAGAGAGCAAGGAATACAAGAAATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAGATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAAAATCTCAGCTTGTGCAAGCCGCGAAAACACAAAAATCAAACTCCTCTCTGACATGCTTGCTCTTGGTGATATTTGGCATTGTTCTCCTGATCGTGATTATAGTACTCGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin_2

Protein Analysis

268

Amino Acids

29.48

Weight (kDa)

6.01

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	25 - 156	5.2e-37	Syntaxin-like protein
SNARE	PF05739	211 - 263	4e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	61
AccII	CGCG	1 cut(s)	713
AciI	CCGC	5 cut(s)	270, 428, 457, 608, 711
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	2 cut(s)	213, 452
AfaI	GTAC	4 cut(s)	151, 447, 652, 795
AgsI	TTSAA	6 cut(s)	11, 52, 323, 520, 536, 598
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	121
ApeKI	GCWGC	4 cut(s)	184, 362, 674, 800
ApoI	RAATTY	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	443, 590, 769
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	171, 349, 661
BccI	CCATC	1 cut(s)	573
BceAI	ACGGC	2 cut(s)	65, 441
BciVI	GTATCC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	249, 417
BfuI	GTATCC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	5 cut(s)	185, 363, 675, 711, 801
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	5 cut(s)	186, 364, 676, 712, 802
BmcAI	AGTACT	1 cut(s)	795
Bme1390I	CCNGG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	289
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	176
BsaWI	WCCGGW	3 cut(s)	110, 166, 448
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 370, 400
BseMII	CTCAG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	724
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	171, 349, 661
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	713
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	4 cut(s)	111, 167, 175, 449
BslFI	GGGAC	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	174, 463
Bsp143I	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	5 cut(s)	270, 428, 457, 608, 711
BspCNI	CTCAG	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	713
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	1 cut(s)	447
BspQI	GCTCTTC	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	445
BssMI	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
Bst6I	CTCTTC	2 cut(s)	22, 414
BstC8I	GCNNGC	4 cut(s)	309, 459, 708, 749
BstDEI	CTNAG	2 cut(s)	303, 696
BstFNI	CGCG	1 cut(s)	713
BstKTI	GATC	6 cut(s)	38, 105, 262, 604, 625, 783
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	171, 349, 661
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuI	GTATCC	1 cut(s)	217
Cac8I	GCNNGC	4 cut(s)	309, 459, 708, 749
CciI	TCATGA	1 cut(s)	633
Csp6I	GTAC	4 cut(s)	150, 446, 651, 794
CviAII	CATG	2 cut(s)	634, 744
CviQI	GTAC	4 cut(s)	150, 446, 651, 794
DdeI	CTNAG	2 cut(s)	303, 696
DpnI	GATC	6 cut(s)	37, 104, 261, 603, 624, 782
DpnII	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	22, 414
EarI	CTCTTC	2 cut(s)	22, 414
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	213, 452
EcoICRI	GAGCTC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	637, 747
FaiI	YATR	6 cut(s)	204, 384, 423, 635, 745, 791
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	2 cut(s)	633, 743
FauI	CCCGC	2 cut(s)	421, 450
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	185, 363, 675, 711, 801
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	5 cut(s)	185, 363, 675, 711, 801
FspBI	CTAG	2 cut(s)	249, 417
GluI	GCNGC	5 cut(s)	185, 363, 675, 711, 801
HapII	CCGG	4 cut(s)	111, 167, 175, 449
Hin1II	CATG	2 cut(s)	637, 747
HincII	GTYRAC	4 cut(s)	62, 139, 586, 619
HindII	GTYRAC	4 cut(s)	62, 139, 586, 619
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	6 cut(s)	20, 68, 114, 132, 473, 630
HpaI	GTTAAC	3 cut(s)	139, 586, 619
HpaII	CCGG	4 cut(s)	111, 167, 175, 449
HphI	GGTGA	3 cut(s)	443, 590, 769
Hpy166II	GTNNAC	4 cut(s)	62, 139, 586, 619
Hpy188I	TCNGA	2 cut(s)	345, 741
Hpy188III	TCNNGA	8 cut(s)	11, 24, 90, 100, 470, 634, 778, 784
Hpy8I	GTNNAC	4 cut(s)	62, 139, 586, 619
HpyAV	CCTTC	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	7 cut(s)	187, 202, 296, 311, 515, 677, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	303, 696
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	637, 747
KpnI	GGTACC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	3 cut(s)	139, 586, 619
Kzo9I	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	169, 177
Lsp1109I	GCAGC	3 cut(s)	171, 349, 661
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	249, 417
MaeII	ACGT	1 cut(s)	122
MalI	GATC	6 cut(s)	37, 104, 261, 603, 624, 782
MboI	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
MboII	GAAGA	5 cut(s)	39, 45, 301, 401, 548
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	174, 463
MluCI	AATT	2 cut(s)	47, 573
MlyI	GAGTC	4 cut(s)	123, 126, 482, 639
MnlI	CCTC	8 cut(s)	23, 36, 408, 424, 427, 517, 574, 745
MseI	TTAA	5 cut(s)	138, 240, 332, 585, 618
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	4 cut(s)	111, 167, 175, 449
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	515
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
NlaIII	CATG	2 cut(s)	637, 747
NlaIV	GGNNCC	1 cut(s)	447
NspI	RCATGY	1 cut(s)	747
PagI	TCATGA	1 cut(s)	633
PciSI	GCTCTTC	1 cut(s)	414
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	20, 68
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	5 cut(s)	186, 364, 676, 712, 802
PleI	GAGTC	4 cut(s)	122, 126, 481, 638
PpsI	GAGTC	4 cut(s)	122, 126, 481, 638
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	4 cut(s)	151, 447, 652, 795
RsaNI	GTAC	4 cut(s)	150, 446, 651, 794
SacI	GAGCTC	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	5 cut(s)	138, 240, 332, 585, 618
SatI	GCNGC	5 cut(s)	185, 363, 675, 711, 801
Sau3AI	GATC	6 cut(s)	35, 102, 259, 601, 622, 780
ScaI	AGTACT	1 cut(s)	795
SchI	GAGTC	4 cut(s)	123, 126, 482, 639
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	174, 463
SfaNI	GCATC	1 cut(s)	289
Sse9I	AATT	2 cut(s)	47, 573
SsiI	CCGC	5 cut(s)	270, 428, 457, 608, 711
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	2 cut(s)	249, 417
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	61, 71, 476
TasI	AATT	2 cut(s)	47, 573
TatI	WGTACW	1 cut(s)	793
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	2 cut(s)	20, 68
Tru1I	TTAA	5 cut(s)	138, 240, 332, 585, 618
Tru9I	TTAA	5 cut(s)	138, 240, 332, 585, 618
TseI	GCWGC	4 cut(s)	184, 362, 674, 800
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	747
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	61
XspI	CTAG	2 cut(s)	249, 417
ZrmI	AGTACT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.