Rh7AG258100

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
26282347 .. 26289552
7206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG258100.1

Sequence Viewer

Length: 1185 bp
ATGAGCTTTCAGGATTTCCGGGATCTGGAAGCGGGCCGCGGGCCGGTTCAGTCCAGGCGAGAACCGACCCAAGCCTTGGCCTCCGGCATTTTCCAGATCACCACCGCCGTCTCCACGTTTCAGAGGCTCGTCAACACCATCGGTACCCCCAAAGACACGCCCGAGCTTCGCGAGAAGCTGCACAAGACAAGACTACATATTGGGCAATTAGTAAAGGATACTTCAGAAAAACTTAAACAAGCGAGTGAAAGAGATCATCATTCTGATGTTAATGGAAGACAGAAGGTTGCAGATGCTAAGCTTGCAAAAGATTTTCAAGCGGTACTGAGAGATTTTCAGAAAGCTCAACGACTTTCAGCTGAGAGGGAAACGGCATATGCTCCTTTTGTTCCCCAGGCTGTTCTTCCATCAAGCTACACTGCTAGTGAGATAAATGTAACCTCAGATAAGAATCCAGAACAGCGTGCTCTCCTTGTGGAATCGAGAAGACAGGAGGTCTTGCTATTAGACAATGAAATTGCCTTTAACGAGGCTATCATCGAGGAAAGAGAACAAGGAATACAAGAGATCCAGCAGCAAATTGGAGAAGTGAATGAGATTTTTAAAGATCTGGCTATTCTGGTTCATGAACAAGGGACCATGATCGAGGATATTGACTCTAATATTGAGAGTTCTCATGCTGCAACTGCCCAGGCAAAGTCCCACCTTGCGAAGGCCTCAAAGACACAGAGATCAAACTCGTCTCTGACTTGCTTGCTGTTGGTAATATTTGGAATTGTGCTTCTCATTGTGATAATAACTATAGTTACAGACTTTACTCTTAAGATTTTGGGACTCGAAGATTGTGCTGACATTATGGTAGGAGACGAAATGACCAGAGGTATATCTGGTGAAAAGAAAAAGAGACTCACCACAGGGGAGATGCCGGTTGGACCAGAAAGAGTGCTTGTAATGGATGAAATATCCAATGGGCTGGACAGCTCAACAACATTGCAATTAGTGAAATCACCACAACAATATGTCCACATTCTGGACGGAACTGCATTAATCGCTCTACTGCAGCCAGCACCGGAGGCGTACGATCTCTTTGATGATATAATTCTCCTCTCGGATGGCTACATCGTTTATCAGGATCCACATGAGAATGTTCTTGAGTTCTTTGAGTACATGGGCTTCAAATATTGA

Protein Analysis

394

Amino Acids

44.02

Weight (kDa)

5.0

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 23 - 158 7e-37 Syntaxin-like protein
SNARE PF05739 213 - 265 7.6e-16 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 2 cut(s) 76, 1030
AccII CGCG 2 cut(s) 39, 171
AciI CCGC 5 cut(s) 32, 37, 39, 105, 320
AclWI GGATC 4 cut(s) 30, 562, 1127, 1140
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 4 cut(s) 145, 324, 1079, 1166
AfiI CCNNNNNNNGG 5 cut(s) 25, 43, 76, 712, 1030
AflII CTTAAG 1 cut(s) 821
AgsI TTSAA 2 cut(s) 317, 1177
AhdI GACNNNNNGTC 1 cut(s) 494
AjnI CCWGG 3 cut(s) 53, 393, 690
AluBI AGCT 8 cut(s) 6, 166, 178, 301, 344, 359, 414, 981
AluI AGCT 8 cut(s) 6, 166, 178, 301, 344, 359, 414, 981
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 4 cut(s) 115, 747, 858, 898
AlwI GGATC 4 cut(s) 30, 562, 1127, 1140
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 4 cut(s) 34, 41, 78, 714
ApeKI GCWGC 4 cut(s) 178, 574, 680, 1060
AseI ATTAAT 1 cut(s) 1046
Asp718I GGTACC 1 cut(s) 143
AspS9I GGNCC 4 cut(s) 34, 41, 636, 932
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 91, 901, 902, 999
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 636, 932
BamHI GGATCC 1 cut(s) 1132
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 1 cut(s) 1157
BbsI GAAGAC 2 cut(s) 283, 493
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 4 cut(s) 165, 586, 667, 1072
BccI CCATC 3 cut(s) 146, 415, 1106
BceAI ACGGC 2 cut(s) 92, 387
BcgI CGANNNNNNTGC 2 cut(s) 827, 861
BciT130I CCWGG 3 cut(s) 55, 395, 692
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 4 cut(s) 115, 747, 858, 898
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 2 cut(s) 801, 1058
BfrI CTTAAG 1 cut(s) 821
BfuI GTATCC 1 cut(s) 211
BglII AGATCT 1 cut(s) 607
BisI GCNGC 5 cut(s) 37, 179, 575, 681, 1061
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 5 cut(s) 38, 180, 576, 682, 1062
Bme1390I CCNGG 4 cut(s) 20, 55, 395, 692
Bme18I GGWCC 2 cut(s) 636, 932
BmeRI GACNNNNNGTC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 4 cut(s) 34, 41, 636, 932
BmiI GGNNCC 3 cut(s) 145, 637, 1134
BmrFI CCNGG 4 cut(s) 20, 55, 395, 692
BmsI GCATC 2 cut(s) 283, 912
BpiI GAAGAC 2 cut(s) 283, 493
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 1172
BpuMI CCSGG 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 4 cut(s) 37, 75, 393, 690
BsaWI WCCGGW 1 cut(s) 1069
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 43, 76, 712, 1030
Bse118I RCCGGY 2 cut(s) 43, 925
Bse3DI GCAATG 1 cut(s) 989
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 3 cut(s) 55, 395, 692
BseDI CCNNGG 4 cut(s) 37, 75, 393, 690
BseGI GGATG 2 cut(s) 961, 1117
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 5 cut(s) 25, 43, 76, 712, 1030
BseMI GCAATG 1 cut(s) 989
BseMII CTCAG 3 cut(s) 317, 351, 456
BseRI GAGGAG 1 cut(s) 1094
BseXI GCAGC 4 cut(s) 165, 586, 667, 1072
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 2 cut(s) 39, 171
BshFI GGCC 4 cut(s) 36, 43, 80, 716
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 469
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 5 cut(s) 19, 44, 84, 926, 1070
BsiWI CGTACG 1 cut(s) 1077
BslFI GGGAC 3 cut(s) 649, 685, 846
BslI CCNNNNNNNGG 5 cut(s) 25, 43, 76, 712, 1030
BsmAI GTCTC 4 cut(s) 115, 747, 858, 898
BsmBI CGTCTC 3 cut(s) 115, 747, 858
BsmFI GGGAC 3 cut(s) 649, 685, 846
BsnI GGCC 4 cut(s) 36, 43, 80, 716
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 5 cut(s) 32, 37, 39, 105, 320
BspANI GGCC 4 cut(s) 36, 43, 80, 716
BspCNI CTCAG 3 cut(s) 318, 352, 455
BspFNI CGCG 2 cut(s) 39, 171
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 145, 637, 1134
BspMAI CTGCAG 1 cut(s) 1062
BspPI GGATC 4 cut(s) 30, 562, 1127, 1140
BspT107I GGYRCC 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 821
BsrDI GCAATG 1 cut(s) 989
BsrFI RCCGGY 2 cut(s) 43, 925
BssAI RCCGGY 2 cut(s) 43, 925
BssECI CCNNGG 4 cut(s) 37, 75, 393, 690
BssMI GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 3 cut(s) 55, 395, 692
BstAFI CTTAAG 1 cut(s) 821
BstC8I GCNNGC 6 cut(s) 34, 41, 303, 465, 755, 1065
BstDEI CTNAG 4 cut(s) 297, 326, 360, 442
BstDSI CCRYGG 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 961, 1117
BstFNI CGCG 2 cut(s) 39, 171
BstKTI GATC 9 cut(s) 25, 99, 256, 570, 610, 645, 734, 1084, 1135
BstMAI GTCTC 4 cut(s) 115, 747, 858, 898
BstMBI GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
BstMWI GCNNNNNNNGC 4 cut(s) 302, 686, 1049, 1073
BstNI CCWGG 3 cut(s) 55, 395, 692
BstSCI CCNGG 4 cut(s) 18, 53, 393, 690
BstSFI CTRYAG 2 cut(s) 801, 1058
BstUI CGCG 2 cut(s) 39, 171
BstV1I GCAGC 4 cut(s) 165, 586, 667, 1072
BstV2I GAAGAC 2 cut(s) 283, 493
BstX2I RGATCY 4 cut(s) 22, 567, 607, 1132
BstXI CCANNNNNNTGG 1 cut(s) 973
BstYI RGATCY 4 cut(s) 22, 567, 607, 1132
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 4 cut(s) 36, 43, 80, 716
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 961, 1117
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
BtuMI TCGCGA 1 cut(s) 171
Cac8I GCNNGC 6 cut(s) 34, 41, 303, 465, 755, 1065
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 2 cut(s) 43, 925
Cfr13I GGNCC 4 cut(s) 34, 41, 636, 932
Cfr42I CCGCGG 1 cut(s) 40
Csp6I GTAC 4 cut(s) 144, 323, 1078, 1165
CviAII CATG 5 cut(s) 626, 640, 677, 1139, 1168
CviQI GTAC 4 cut(s) 144, 323, 1078, 1165
DdeI CTNAG 4 cut(s) 297, 326, 360, 442
DpnI GATC 9 cut(s) 24, 98, 255, 569, 609, 644, 733, 1083, 1134
DpnII GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
DraI TTTAAA 1 cut(s) 604
DriI GACNNNNNGTC 1 cut(s) 494
Eam1105I GACNNNNNGTC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 716
Eco47I GGWCC 2 cut(s) 636, 932
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoRII CCWGG 3 cut(s) 53, 393, 690
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 3 cut(s) 115, 747, 858
FaeI CATG 5 cut(s) 629, 643, 680, 1142, 1171
FaqI GGGAC 3 cut(s) 649, 685, 846
FatI CATG 5 cut(s) 625, 639, 676, 1138, 1167
FauI CCCGC 2 cut(s) 25, 32
FauNDI CATATG 1 cut(s) 376
Fnu4HI GCNGC 5 cut(s) 37, 179, 575, 681, 1061
FokI GGATG 2 cut(s) 968, 1124
Fsp4HI GCNGC 5 cut(s) 37, 179, 575, 681, 1061
FspBI CTAG 1 cut(s) 423
GluI GCNGC 5 cut(s) 37, 179, 575, 681, 1061
HaeIII GGCC 4 cut(s) 36, 43, 80, 716
HapII CCGG 5 cut(s) 19, 44, 84, 926, 1070
Hin1II CATG 5 cut(s) 629, 643, 680, 1142, 1171
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 5 cut(s) 451, 479, 656, 834, 906
HpaII CCGG 5 cut(s) 19, 44, 84, 926, 1070
HphI GGTGA 4 cut(s) 91, 901, 902, 999
Hpy166II GTNNAC 2 cut(s) 133, 1024
Hpy188I TCNGA 7 cut(s) 123, 226, 265, 339, 445, 747, 1111
Hpy8I GTNNAC 2 cut(s) 133, 1024
HpyAV CCTTC 2 cut(s) 277, 706
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 7 cut(s) 181, 290, 305, 683, 994, 1043, 1060
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 686, 1049, 1073
HpyF3I CTNAG 4 cut(s) 297, 326, 360, 442
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 5 cut(s) 629, 643, 680, 1142, 1171
KpnI GGTACC 1 cut(s) 147
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 4 cut(s) 165, 586, 667, 1072
LweI GCATC 2 cut(s) 283, 912
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 436, 805
MalI GATC 9 cut(s) 24, 98, 255, 569, 609, 644, 733, 1083, 1134
MboI GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
MboII GAAGA 4 cut(s) 288, 395, 498, 851
MflI RGATCY 4 cut(s) 22, 567, 607, 1132
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 6 cut(s) 206, 516, 579, 774, 995, 1098
MlyI GAGTC 3 cut(s) 650, 828, 900
MmeI TCCRAC 1 cut(s) 910
MseI TTAA 6 cut(s) 234, 270, 525, 603, 822, 1046
MslI CAYNNNNRTG 2 cut(s) 264, 1143
MspA1I CMGCKG 2 cut(s) 39, 359
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 5 cut(s) 19, 44, 84, 926, 1070
MspR9I CCNGG 4 cut(s) 20, 55, 395, 692
MvaI CCWGG 3 cut(s) 55, 395, 692
MvnI CGCG 2 cut(s) 39, 171
MwoI GCNNNNNNNGC 4 cut(s) 302, 686, 1049, 1073
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 376
NdeII GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
NlaIII CATG 5 cut(s) 629, 643, 680, 1142, 1171
NlaIV GGNNCC 3 cut(s) 145, 637, 1134
NruI TCGCGA 1 cut(s) 171
PagI TCATGA 1 cut(s) 625
PceI AGGCCT 1 cut(s) 716
PfeI GAWTC 2 cut(s) 451, 479
Pfl23II CGTACG 1 cut(s) 1077
PflMI CCANNNNNTGG 2 cut(s) 76, 1030
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 5 cut(s) 38, 180, 576, 682, 1062
PleI GAGTC 3 cut(s) 650, 828, 900
PpsI GAGTC 3 cut(s) 650, 828, 900
PshBI ATTAAT 1 cut(s) 1046
Psp6I CCWGG 3 cut(s) 53, 393, 690
PspGI CCWGG 3 cut(s) 53, 393, 690
PspLI CGTACG 1 cut(s) 1077
PspN4I GGNNCC 3 cut(s) 145, 637, 1134
PspPI GGNCC 4 cut(s) 34, 41, 636, 932
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
PstI CTGCAG 1 cut(s) 1062
PsuI RGATCY 4 cut(s) 22, 567, 607, 1132
PvuII CAGCTG 1 cut(s) 359
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 4 cut(s) 145, 324, 1079, 1166
RsaNI GTAC 4 cut(s) 144, 323, 1078, 1165
RseI CAYNNNNRTG 2 cut(s) 264, 1143
SacII CCGCGG 1 cut(s) 40
SaqAI TTAA 6 cut(s) 234, 270, 525, 603, 822, 1046
SatI GCNGC 5 cut(s) 37, 179, 575, 681, 1061
Sau3AI GATC 9 cut(s) 22, 96, 253, 567, 607, 642, 731, 1081, 1132
Sau96I GGNCC 4 cut(s) 34, 41, 636, 932
SchI GAGTC 3 cut(s) 650, 828, 900
ScrFI CCNGG 4 cut(s) 20, 55, 395, 692
SduI GDGCHC 1 cut(s) 469
SfaNI GCATC 2 cut(s) 283, 912
SfcI CTRYAG 2 cut(s) 801, 1058
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 2 cut(s) 636, 932
SmiMI CAYNNNNRTG 2 cut(s) 264, 1143
SmlI CTYRAG 2 cut(s) 821, 1151
SmoI CTYRAG 2 cut(s) 821, 1151
Sse9I AATT 6 cut(s) 206, 516, 579, 774, 995, 1098
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 5 cut(s) 32, 37, 39, 105, 320
SspI AATATT 3 cut(s) 664, 768, 1181
SspMI CTAG 1 cut(s) 423
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 4 cut(s) 18, 53, 393, 690
StyI CCWWGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 482, 540, 645, 837
TasI AATT 6 cut(s) 206, 516, 579, 774, 995, 1098
TatI WGTACW 1 cut(s) 1164
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 451, 479
Tru1I TTAA 6 cut(s) 234, 270, 525, 603, 822, 1046
Tru9I TTAA 6 cut(s) 234, 270, 525, 603, 822, 1046
TscAI CASTG 1 cut(s) 424
TseI GCWGC 4 cut(s) 178, 574, 680, 1060
TspDTI ATGAA 4 cut(s) 528, 614, 642, 972
TspGWI ACGGA 1 cut(s) 1050
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 2 cut(s) 76, 1030
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 2 cut(s) 636, 932
VspI ATTAAT 1 cut(s) 1046
XagI CCTNNNNNAGG 1 cut(s) 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.