Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

22903786 .. 22908570

Gene Structure 4785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGCTTTCAGGATTTCCGGGATCTGGAAGCGGGCCGCGGGCCGGTTCAGTCCAGGCGAGAGCCGACCCAAGCCTTGGCCTCCGGCATTTTCCAGATCACCACCGCCGTGTCCACGTTTCAGAGGCTCGTCAACACCATCGGTACCCCCAAAGACACGCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGACTACATATTGGGCAATTAGTAAAGGATACTTCAGAAAAACTTAAACAAGCGAGTGAAAGAGATCATCATTCTGATGTTAATGGAAGACAGAAGGTTGCAGATGCTAAGCTTGCAAAAGATTTTCAAGCGGTACTGAGAGATTTTCAGAAAGCTCAACGACTTTCAGCTGAGAGGGAAACGGCATATGCTCCTTTTGTTCCCCAGGCTGTTCTTCCATCAAGCTACACTGCTAGTGAGATAAATGTAACCTCAGATAAGAATCCAGAACAGCGTGCTCTCCTTGTGGAATCGAGAAGACAGGAGGTCTTGCTATTAGACAATGAAATTGCCTTTAACGAGGCTATCATCGAGGAAAGAGAACAAGGAATACAAGAGATCCAGCAGCAAATTGGAGAAGTGAATGAGATTTTTAAAGATCTGGCTATTCTGGTTCATGAACAAGGGACCATGATCGGTAACTTATCGTGTCCTTTCTTGAAGGCACTATTATTTATCTGGCTAGTGTGTTCTTATGTTGATTGTATCTGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

241

Amino Acids

27.23

Weight (kDa)

5.64

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	23 - 158	2.1e-37	Syntaxin-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccII	CGCG	2 cut(s)	39, 171
AciI	CCGC	6 cut(s)	32, 37, 39, 105, 169, 320
AclWI	GGATC	2 cut(s)	30, 562
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	145, 324
AfiI	CCNNNNNNNGG	3 cut(s)	25, 43, 76
AgsI	TTSAA	2 cut(s)	317, 670
AhdI	GACNNNNNGTC	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	53, 393
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	7 cut(s)	6, 166, 178, 301, 344, 359, 414
AluI	AGCT	7 cut(s)	6, 166, 178, 301, 344, 359, 414
Alw21I	GWGCWC	2 cut(s)	168, 469
AlwI	GGATC	2 cut(s)	30, 562
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	34, 41, 78
ApeKI	GCWGC	2 cut(s)	178, 574
Asp718I	GGTACC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	34, 41, 636
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	636
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	283, 493
Bbv12I	GWGCWC	2 cut(s)	168, 469
BbvI	GCAGC	2 cut(s)	165, 586
BccI	CCATC	2 cut(s)	146, 415
BceAI	ACGGC	2 cut(s)	92, 387
BciT130I	CCWGG	2 cut(s)	55, 395
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	2 cut(s)	423, 692
BfuI	GTATCC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	3 cut(s)	37, 179, 575
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	3 cut(s)	38, 180, 576
Bme1390I	CCNGG	3 cut(s)	20, 55, 395
Bme18I	GGWCC	1 cut(s)	636
BmeRI	GACNNNNNGTC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	34, 41, 636
BmiI	GGNNCC	2 cut(s)	145, 637
BmrFI	CCNGG	3 cut(s)	20, 55, 395
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	283, 493
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	37, 75, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 43, 76
Bse118I	RCCGGY	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	55, 395
BseDI	CCNNGG	3 cut(s)	37, 75, 393
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	25, 43, 76
BseMII	CTCAG	3 cut(s)	317, 351, 456
BseXI	GCAGC	2 cut(s)	165, 586
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	39, 171
BshFI	GGCC	3 cut(s)	36, 43, 80
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	168, 469
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	3 cut(s)	19, 44, 84
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	3 cut(s)	25, 43, 76
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	3 cut(s)	36, 43, 80
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	168, 469
Bsp143I	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	6 cut(s)	32, 37, 39, 105, 169, 320
BspANI	GGCC	3 cut(s)	36, 43, 80
BspCNI	CTCAG	3 cut(s)	318, 352, 455
BspFNI	CGCG	2 cut(s)	39, 171
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	145, 637
BspPI	GGATC	2 cut(s)	30, 562
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	37, 75, 393
BssMI	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	55, 395
BstC8I	GCNNGC	4 cut(s)	34, 41, 303, 465
BstDEI	CTNAG	4 cut(s)	297, 326, 360, 442
BstDSI	CCRYGG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	39, 171
BstKTI	GATC	6 cut(s)	25, 99, 256, 570, 610, 645
BstMBI	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	55, 395
BstSCI	CCNGG	3 cut(s)	18, 53, 393
BstUI	CGCG	2 cut(s)	39, 171
BstV1I	GCAGC	2 cut(s)	165, 586
BstV2I	GAAGAC	2 cut(s)	283, 493
BstX2I	RGATCY	3 cut(s)	22, 567, 607
BstYI	RGATCY	3 cut(s)	22, 567, 607
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	36, 43, 80
BtgI	CCRYGG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	4 cut(s)	34, 41, 303, 465
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	34, 41, 636
Cfr42I	CCGCGG	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	144, 323
CviAII	CATG	2 cut(s)	626, 640
CviQI	GTAC	2 cut(s)	144, 323
DdeI	CTNAG	4 cut(s)	297, 326, 360, 442
DpnI	GATC	6 cut(s)	24, 98, 255, 569, 609, 644
DpnII	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
DraI	TTTAAA	1 cut(s)	604
DriI	GACNNNNNGTC	1 cut(s)	494
Eam1105I	GACNNNNNGTC	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	53, 393
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	629, 643
FaiI	YATR	6 cut(s)	198, 376, 378, 627, 641, 705
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	2 cut(s)	625, 639
FauI	CCCGC	2 cut(s)	25, 32
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	37, 179, 575
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	37, 179, 575
FspBI	CTAG	2 cut(s)	423, 692
GluI	GCNGC	3 cut(s)	37, 179, 575
HaeIII	GGCC	3 cut(s)	36, 43, 80
HapII	CCGG	3 cut(s)	19, 44, 84
Hin1II	CATG	2 cut(s)	629, 643
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	451, 479
HpaII	CCGG	3 cut(s)	19, 44, 84
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	114, 133
Hpy188I	TCNGA	5 cut(s)	123, 226, 265, 339, 445
Hpy188III	TCNNGA	7 cut(s)	11, 26, 94, 455, 483, 626, 667
Hpy8I	GTNNAC	2 cut(s)	114, 133
HpyAV	CCTTC	2 cut(s)	277, 664
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	181, 290, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	4 cut(s)	297, 326, 360, 442
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	629, 643
KpnI	GGTACC	1 cut(s)	147
KspI	CCGCGG	1 cut(s)	40
Kzo9I	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
LmnI	GCTCC	2 cut(s)	171, 385
Lsp1109I	GCAGC	2 cut(s)	165, 586
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	423, 692
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	436, 647
MalI	GATC	6 cut(s)	24, 98, 255, 569, 609, 644
MboI	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
MboII	GAAGA	3 cut(s)	288, 395, 498
MflI	RGATCY	3 cut(s)	22, 567, 607
MhlI	GDGCHC	2 cut(s)	168, 469
MluCI	AATT	3 cut(s)	206, 516, 579
MnlI	CCTC	7 cut(s)	91, 117, 357, 451, 487, 523, 535
MseI	TTAA	4 cut(s)	234, 270, 525, 603
MslI	CAYNNNNRTG	2 cut(s)	107, 264
MspA1I	CMGCKG	2 cut(s)	39, 359
MspI	CCGG	3 cut(s)	19, 44, 84
MspR9I	CCNGG	3 cut(s)	20, 55, 395
MvaI	CCWGG	2 cut(s)	55, 395
MvnI	CGCG	2 cut(s)	39, 171
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
NlaIII	CATG	2 cut(s)	629, 643
NlaIV	GGNNCC	2 cut(s)	145, 637
OliI	CACNNNNGTG	1 cut(s)	107
PagI	TCATGA	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	451, 479
PflMI	CCANNNNNTGG	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	38, 180, 576
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	53, 393
PspGI	CCWGG	2 cut(s)	53, 393
PspN4I	GGNNCC	2 cut(s)	145, 637
PspPI	GGNCC	3 cut(s)	34, 41, 636
PsrI	GAACNNNNNNTAC	2 cut(s)	543, 575
PsuI	RGATCY	3 cut(s)	22, 567, 607
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	145, 324
RsaNI	GTAC	2 cut(s)	144, 323
RseI	CAYNNNNRTG	2 cut(s)	107, 264
SacI	GAGCTC	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	40
SaqAI	TTAA	4 cut(s)	234, 270, 525, 603
SatI	GCNGC	3 cut(s)	37, 179, 575
Sau3AI	GATC	6 cut(s)	22, 96, 253, 567, 607, 642
Sau96I	GGNCC	3 cut(s)	34, 41, 636
ScrFI	CCNGG	3 cut(s)	20, 55, 395
SduI	GDGCHC	2 cut(s)	168, 469
SfaNI	GCATC	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	40
SgrBI	CCGCGG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	107, 264
Sse9I	AATT	3 cut(s)	206, 516, 579
SsiI	CCGC	6 cut(s)	32, 37, 39, 105, 169, 320
SspMI	CTAG	2 cut(s)	423, 692
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	18, 53, 393
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	482, 540
TasI	AATT	3 cut(s)	206, 516, 579
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	451, 479
Tru1I	TTAA	4 cut(s)	234, 270, 525, 603
Tru9I	TTAA	4 cut(s)	234, 270, 525, 603
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	2 cut(s)	178, 574
TspDTI	ATGAA	3 cut(s)	528, 614, 642
TspRI	CASTG	1 cut(s)	424
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	2 cut(s)	423, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.