Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

14139178 .. 14144088

Gene Structure 4911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAGCTTTCAGGATTACCGGGATCTGGAAGCGGGCCGCGGGTCGGCTCAGTCCAGGCGCGACCCGACCCAAGCCGTCGCCTCCGGCATTTTCCAGATCACCACCGCCGTCTCCACGTTTCAGAGGCTCGTCAACACCATCGGGACCCCCAAAGACACGCCCGAGCTCCGCGAGAAGCTGCACAAGACGAGACTACATATTGGCCAATTAGTAAAGGATACTTCAGAGAAACTTAAACTAGCGAGTGAACGAGATCACCATACTGAAGTTAATGGAAGACAGAAGGTTGCAGATGCTAAACTTGCCAAAGATTTTCAAGCGGTACTGAGGGACTTTCAGAAAGCTCAACGACTGTCAGCTGAGAGGGAAACAGCATATGCTCCTTTTGTTCCCCAGGCTGTTCTTCCATCAAGCTACACTGCTAGTGAGATAGATACCTCAGATAAGAGTCCAGAACAGCGTGCTCTCCTTGTAGAATCGAGAAGACAGGAGGTCTTGCTGTTAGACAATGAAATTGCCTTTAATGAGGCTATCATTGAGGAACGGGAACAAGGAATACAAGAGATCCAGCAGCAAATTGGAGAAGTGAATGAGATTTTTAAAGATCTGGCTATCCTGGTTCATGAACAAGGAACCATGATCGAGGATATTGACTCTAATGTTGAGAGTGCTCACGCTGCAACTTCCCAGGCAAAGTCACACCTTGTGAAGGCCGCAAAGACCCAGAGATCAAACTCGTCTCTGGCGTGCTTGCTGTTGGTAATATTTGGAATTGTGCTTCTCATTGTGATAATAGTACTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

270

Amino Acids

29.88

Weight (kDa)

5.71

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	23 - 157	3.6e-36	Syntaxin-like protein
SNARE	PF05739	212 - 264	1.6e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	39, 60, 171
AciI	CCGC	7 cut(s)	32, 37, 39, 105, 169, 320, 714
AclWI	GGATC	2 cut(s)	30, 559
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	207, 285
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	2 cut(s)	324, 798
AfiI	CCNNNNNNNGG	3 cut(s)	25, 43, 709
AgsI	TTSAA	1 cut(s)	317
AhdI	GACNNNNNGTC	1 cut(s)	491
AjnI	CCWGG	4 cut(s)	53, 393, 615, 687
AluBI	AGCT	7 cut(s)	6, 166, 178, 344, 359, 414, 806
AluI	AGCT	7 cut(s)	6, 166, 178, 344, 359, 414, 806
Alw21I	GWGCWC	3 cut(s)	168, 466, 673
Alw26I	GTCTC	3 cut(s)	115, 184, 744
AlwI	GGATC	2 cut(s)	30, 559
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	34, 202, 711
ApeKI	GCWGC	4 cut(s)	178, 571, 677, 803
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	34, 144
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	91, 248
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	283, 490
Bbv12I	GWGCWC	3 cut(s)	168, 466, 673
BbvI	GCAGC	3 cut(s)	165, 583, 664
BccI	CCATC	2 cut(s)	146, 415
BceAI	ACGGC	2 cut(s)	59, 92
BciT130I	CCWGG	4 cut(s)	55, 395, 617, 689
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	115, 184, 744
BfaI	CTAG	2 cut(s)	239, 423
BfuI	GTATCC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	6 cut(s)	37, 179, 572, 678, 714, 804
BlsI	GCNGC	6 cut(s)	38, 180, 573, 679, 715, 805
BmcAI	AGTACT	1 cut(s)	798
Bme1390I	CCNGG	5 cut(s)	20, 55, 395, 617, 689
Bme18I	GGWCC	1 cut(s)	144
BmeRI	GACNNNNNGTC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	34, 144
BmiI	GGNNCC	3 cut(s)	145, 146, 634
BmrFI	CCNGG	5 cut(s)	20, 55, 395, 617, 689
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	283, 490
BpuMI	CCSGG	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	37, 393, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 43, 709
BseBI	CCWGG	4 cut(s)	55, 395, 617, 689
BseDI	CCNNGG	3 cut(s)	37, 393, 687
BseLI	CCNNNNNNNGG	3 cut(s)	25, 43, 709
BseMII	CTCAG	4 cut(s)	62, 317, 351, 453
BseXI	GCAGC	3 cut(s)	165, 583, 664
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	3 cut(s)	39, 60, 171
BshFI	GGCC	3 cut(s)	36, 204, 713
BsiHKAI	GWGCWC	3 cut(s)	168, 466, 673
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	19, 84
BslFI	GGGAC	2 cut(s)	157, 344
BslI	CCNNNNNNNGG	3 cut(s)	25, 43, 709
BsmAI	GTCTC	3 cut(s)	115, 184, 744
BsmBI	CGTCTC	2 cut(s)	115, 744
BsmFI	GGGAC	2 cut(s)	157, 344
BsnI	GGCC	3 cut(s)	36, 204, 713
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	168, 466, 673
Bsp143I	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
BspACI	CCGC	7 cut(s)	32, 37, 39, 105, 169, 320, 714
BspANI	GGCC	3 cut(s)	36, 204, 713
BspCNI	CTCAG	4 cut(s)	61, 318, 352, 452
BspFNI	CGCG	3 cut(s)	39, 60, 171
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	3 cut(s)	145, 146, 634
BspPI	GGATC	2 cut(s)	30, 559
BssECI	CCNNGG	3 cut(s)	37, 393, 687
BssMI	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
Bst2UI	CCWGG	4 cut(s)	55, 395, 617, 689
Bst4CI	ACNGT	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	34, 462, 748, 752
BstDEI	CTNAG	4 cut(s)	48, 326, 360, 439
BstDSI	CCRYGG	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstFNI	CGCG	3 cut(s)	39, 60, 171
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	7 cut(s)	25, 99, 256, 567, 607, 642, 731
BstMAI	GTCTC	3 cut(s)	115, 184, 744
BstMBI	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 677
BstNI	CCWGG	4 cut(s)	55, 395, 617, 689
BstSCI	CCNGG	5 cut(s)	18, 53, 393, 615, 687
BstUI	CGCG	3 cut(s)	39, 60, 171
BstV1I	GCAGC	3 cut(s)	165, 583, 664
BstV2I	GAAGAC	2 cut(s)	283, 490
BstX2I	RGATCY	3 cut(s)	22, 564, 604
BstYI	RGATCY	3 cut(s)	22, 564, 604
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	36, 204, 713
BtgI	CCRYGG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	4 cut(s)	34, 462, 748, 752
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	34, 144
Cfr42I	CCGCGG	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	323, 797
CviAII	CATG	2 cut(s)	623, 637
CviQI	GTAC	2 cut(s)	323, 797
DdeI	CTNAG	4 cut(s)	48, 326, 360, 439
DpnI	GATC	7 cut(s)	24, 98, 255, 566, 606, 641, 730
DpnII	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
DraI	TTTAAA	1 cut(s)	601
DraIII	CACNNNGTG	1 cut(s)	706
DriI	GACNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	202
Eam1105I	GACNNNNNGTC	1 cut(s)	491
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	207, 285
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	4 cut(s)	53, 393, 615, 687
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	2 cut(s)	115, 744
FaeI	CATG	2 cut(s)	626, 640
FaiI	YATR	6 cut(s)	198, 261, 376, 378, 624, 638
FaqI	GGGAC	2 cut(s)	157, 344
FatI	CATG	2 cut(s)	622, 636
FauI	CCCGC	2 cut(s)	25, 32
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	6 cut(s)	37, 179, 572, 678, 714, 804
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	6 cut(s)	37, 179, 572, 678, 714, 804
FspBI	CTAG	2 cut(s)	239, 423
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	6 cut(s)	37, 179, 572, 678, 714, 804
HaeIII	GGCC	3 cut(s)	36, 204, 713
HapII	CCGG	2 cut(s)	19, 84
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	626, 640
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	448, 476, 653
HpaII	CCGG	2 cut(s)	19, 84
HphI	GGTGA	2 cut(s)	91, 248
Hpy166II	GTNNAC	2 cut(s)	133, 248
Hpy188I	TCNGA	4 cut(s)	123, 226, 339, 442
Hpy188III	TCNNGA	7 cut(s)	11, 26, 94, 142, 452, 480, 623
Hpy8I	GTNNAC	2 cut(s)	133, 248
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	277, 703
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	4 cut(s)	181, 290, 680, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 677
HpyF3I	CTNAG	4 cut(s)	48, 326, 360, 439
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	626, 640
HspAI	GCGC	1 cut(s)	58
KflI	GGGWCCC	1 cut(s)	144
KspI	CCGCGG	1 cut(s)	40
Kzo9I	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
LmnI	GCTCC	2 cut(s)	171, 385
Lsp1109I	GCAGC	3 cut(s)	165, 583, 664
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	239, 423
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	696
MalI	GATC	7 cut(s)	24, 98, 255, 566, 606, 641, 730
MboI	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
MboII	GAAGA	3 cut(s)	288, 395, 495
MflI	RGATCY	3 cut(s)	22, 564, 604
MhlI	GDGCHC	3 cut(s)	168, 466, 673
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	4 cut(s)	206, 513, 576, 771
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	457, 647
MnlI	CCTC	9 cut(s)	91, 117, 321, 357, 448, 484, 520, 532, 637
Mox20I	TGGCCA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	5 cut(s)	234, 270, 522, 600, 808
Msp20I	TGGCCA	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	39, 359
MspI	CCGG	2 cut(s)	19, 84
MspR9I	CCNGG	5 cut(s)	20, 55, 395, 617, 689
MvaI	CCWGG	4 cut(s)	55, 395, 617, 689
MvnI	CGCG	3 cut(s)	39, 60, 171
MwoI	GCNNNNNNNGC	2 cut(s)	302, 677
NciI	CCSGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
NlaIII	CATG	2 cut(s)	626, 640
NlaIV	GGNNCC	3 cut(s)	145, 146, 634
NmuCI	GTSAC	1 cut(s)	696
PagI	TCATGA	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	6 cut(s)	38, 180, 573, 679, 715, 805
PleI	GAGTC	2 cut(s)	456, 647
PpsI	GAGTC	2 cut(s)	456, 647
PpuMI	RGGWCCY	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	4 cut(s)	53, 393, 615, 687
PspGI	CCWGG	4 cut(s)	53, 393, 615, 687
PspN4I	GGNNCC	3 cut(s)	145, 146, 634
PspPI	GGNCC	2 cut(s)	34, 144
PspPPI	RGGWCCY	1 cut(s)	144
PsrI	GAACNNNNNNTAC	2 cut(s)	540, 572
PsuI	RGATCY	3 cut(s)	22, 564, 604
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	324, 798
RsaNI	GTAC	2 cut(s)	323, 797
SacI	GAGCTC	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	40
SaqAI	TTAA	5 cut(s)	234, 270, 522, 600, 808
SatI	GCNGC	6 cut(s)	37, 179, 572, 678, 714, 804
Sau3AI	GATC	7 cut(s)	22, 96, 253, 564, 604, 639, 728
Sau96I	GGNCC	2 cut(s)	34, 144
ScaI	AGTACT	1 cut(s)	798
SchI	GAGTC	2 cut(s)	457, 647
ScrFI	CCNGG	5 cut(s)	20, 55, 395, 617, 689
SduI	GDGCHC	3 cut(s)	168, 466, 673
SfaNI	GCATC	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	40
SgrBI	CCGCGG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	4 cut(s)	206, 513, 576, 771
SsiI	CCGC	7 cut(s)	32, 37, 39, 105, 169, 320, 714
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	2 cut(s)	239, 423
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	18, 53, 393, 615, 687
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	479, 642
TasI	AATT	4 cut(s)	206, 513, 576, 771
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	2 cut(s)	39, 716
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	5 cut(s)	234, 270, 522, 600, 808
Tru9I	TTAA	5 cut(s)	234, 270, 522, 600, 808
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	696
TseI	GCWGC	4 cut(s)	178, 571, 677, 803
Tsp45I	GTSAC	1 cut(s)	696
TspDTI	ATGAA	3 cut(s)	525, 611, 639
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	707
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	2 cut(s)	239, 423
ZrmI	AGTACT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.