Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

4901589 .. 4905555

Gene Structure 3967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1038300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCTTTCGGGATCTGGAAGCGGGTCGGGGCTCCAATTATTCCCGGCGAGGAGACCTCGGCACTGGAAAGCAGGATCCCACCCAAGCTGTGGCCTCCGGCATTTTCCAGATCAACACCGCCGTATCCACCTTCCAGAGGCTCGTCAACACCATCGGCACCCCCAAAGACACGCCGGAGCTCCGCGAAAAGCTGCACAAGACGAGACTACATATTGGGCAATTGGTGAAGGATACTTCAGAAAAACTTAAACAAGTCAGCGAAAGAGATCATCATACTGAAGTTAATGCAAGCAAGAAGATTACAGATGCTAAGCTTGCAAAAGATTTTCAAGCAGTGCTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATGCTCCTTTTGTTCCTCAAGCTGTTCTTCCTTCCAGTTACACCGCTAGCGAGATAGATGTAAACTCAGAAAAGAGTCCAGAACAGCGTGCTCTTCTTGTGGAATCTAGAAGACAAGAGGTTGTGCTATTGGACAACGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAGGGAATACAAGAAATCCAGCAGCAGATTGGTGAAGTGAATGATATTTTTAAAGATCTTGCTATACTGGTTCATGAGCAAGGAACCATGATTGATGACATTGGCTCCAATATTGAGGGTGCTCATGCTGCAACTGGGCAGGCGAAGTCCCAACTTGTGAAGGCATCAAAGACCCAAAGATCAAATTCGTCTCTGAGTTGCTTGCTCTTGGTAATATTTGGAATTGTGCTTCTCATCGTGATAGTAGTACTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

276

Amino Acids

30.31

Weight (kDa)

5.93

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	28 - 165	1.5e-38	Syntaxin-like protein
SNARE	PF05739	218 - 270	6e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	23, 120, 184, 435
AclWI	GGATC	3 cut(s)	21, 71, 84
AcsI	RAATTY	2 cut(s)	347, 751
AcuI	CTGAAG	2 cut(s)	222, 300
AfaI	GTAC	1 cut(s)	816
AfiI	CCNNNNNNNGG	2 cut(s)	91, 138
AgsI	TTSAA	2 cut(s)	332, 541
AluBI	AGCT	8 cut(s)	6, 89, 181, 193, 316, 374, 413, 824
AluI	AGCT	8 cut(s)	6, 89, 181, 193, 316, 374, 413, 824
Alw21I	GWGCWC	3 cut(s)	183, 484, 691
Alw26I	GTCTC	3 cut(s)	48, 199, 762
AlwI	GGATC	3 cut(s)	21, 71, 84
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	5 cut(s)	193, 371, 589, 695, 821
ApoI	RAATTY	2 cut(s)	347, 751
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	238, 611
AsuNHI	GCTAGC	1 cut(s)	437
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	2 cut(s)	35, 183
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	3 cut(s)	183, 484, 691
BbvI	GCAGC	4 cut(s)	180, 383, 601, 682
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	107
BciVI	GTATCC	2 cut(s)	136, 226
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	48, 199, 762
BfaI	CTAG	2 cut(s)	438, 498
BfuI	GTATCC	2 cut(s)	136, 226
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	5 cut(s)	195, 373, 591, 697, 823
BmcAI	AGTACT	1 cut(s)	816
Bme1390I	CCNGG	1 cut(s)	46
BmiI	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	2 cut(s)	298, 740
BmtI	GCTAGC	1 cut(s)	441
BmuI	ACTGGG	1 cut(s)	711
BpiI	GAAGAC	1 cut(s)	508
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 138
Bse1I	ACTGG	4 cut(s)	70, 426, 639, 706
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	91, 138
BseMII	CTCAG	3 cut(s)	366, 471, 752
BseNI	ACTGG	4 cut(s)	70, 426, 639, 706
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	180, 383, 601, 682
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	3 cut(s)	183, 484, 691
BsiSI	CCGG	3 cut(s)	46, 99, 176
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	2 cut(s)	91, 138
BsmAI	GTCTC	3 cut(s)	48, 199, 762
BsmBI	CGTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	4 cut(s)	35, 183, 484, 691
Bsp143I	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	4 cut(s)	23, 120, 184, 435
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	367, 470, 753
BspFNI	CGCG	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	3 cut(s)	21, 71, 84
BspQI	GCTCTTC	1 cut(s)	489
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	4 cut(s)	70, 426, 639, 706
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
Bst6I	CTCTTC	1 cut(s)	489
BstC8I	GCNNGC	6 cut(s)	292, 318, 439, 480, 708, 770
BstDEI	CTNAG	4 cut(s)	312, 375, 457, 761
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	6 cut(s)	16, 79, 114, 271, 625, 749
BstMAI	GTCTC	3 cut(s)	48, 199, 762
BstMBI	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 695
BstSCI	CCNGG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	180, 383, 601, 682
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	3 cut(s)	13, 76, 622
BstYI	RGATCY	3 cut(s)	13, 76, 622
BsuI	GTATCC	2 cut(s)	136, 226
BsuRI	GGCC	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	63, 342
Cac8I	GCNNGC	6 cut(s)	292, 318, 439, 480, 708, 770
CciI	TCATGA	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	3 cut(s)	641, 655, 692
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	4 cut(s)	312, 375, 457, 761
DpnI	GATC	6 cut(s)	15, 78, 113, 270, 624, 748
DpnII	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
DraI	TTTAAA	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	35, 183
Eco31I	GGTCTC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	222, 300
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoT38I	GRGCYC	2 cut(s)	35, 183
Esp3I	CGTCTC	1 cut(s)	762
FaeI	CATG	3 cut(s)	644, 658, 695
FaiI	YATR	8 cut(s)	213, 276, 391, 393, 632, 642, 656, 693
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	3 cut(s)	640, 654, 691
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
FriOI	GRGCYC	2 cut(s)	35, 183
Fsp4HI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
FspBI	CTAG	2 cut(s)	438, 498
GluI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	46, 99, 176
Hin1II	CATG	3 cut(s)	644, 658, 695
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	466, 494
HpaII	CCGG	3 cut(s)	46, 99, 176
HphI	GGTGA	2 cut(s)	238, 611
Hpy166II	GTNNAC	2 cut(s)	148, 454
Hpy188I	TCNGA	4 cut(s)	241, 354, 460, 762
Hpy188III	TCNNGA	8 cut(s)	11, 17, 109, 136, 470, 498, 641, 805
Hpy8I	GTNNAC	2 cut(s)	148, 454
HpyAV	CCTTC	6 cut(s)	142, 223, 349, 432, 547, 721
HpyCH4V	TGCA	6 cut(s)	196, 290, 320, 371, 698, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 695
HpyF3I	CTNAG	4 cut(s)	312, 375, 457, 761
Hsp92II	CATG	3 cut(s)	644, 658, 695
Kzo9I	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	5 cut(s)	38, 178, 186, 400, 677
Lsp1109I	GCAGC	4 cut(s)	180, 383, 601, 682
LweI	GCATC	2 cut(s)	298, 740
MaeI	CTAG	2 cut(s)	438, 498
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	6 cut(s)	15, 78, 113, 270, 624, 748
MboI	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
MboII	GAAGA	4 cut(s)	310, 410, 476, 513
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	3 cut(s)	13, 76, 622
MhlI	GDGCHC	4 cut(s)	35, 183, 484, 691
MluCI	AATT	5 cut(s)	37, 221, 347, 751, 789
MlyI	GAGTC	1 cut(s)	475
MseI	TTAA	4 cut(s)	249, 285, 618, 826
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	46, 99, 176
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	317, 695
NciI	CCSGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	3 cut(s)	644, 658, 695
NlaIV	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
NmeAIII	GCCGAG	1 cut(s)	39
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	195, 373, 591, 697, 823
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
PsrI	GAACNNNNNNTAC	2 cut(s)	558, 590
PsuI	RGATCY	3 cut(s)	13, 76, 622
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	4 cut(s)	249, 285, 618, 826
SatI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
Sau3AI	GATC	6 cut(s)	13, 76, 111, 268, 622, 746
ScaI	AGTACT	1 cut(s)	816
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	4 cut(s)	35, 183, 484, 691
SfaNI	GCATC	2 cut(s)	298, 740
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	5 cut(s)	37, 221, 347, 751, 789
SsiI	CCGC	4 cut(s)	23, 120, 184, 435
SspI	AATATT	2 cut(s)	679, 783
SspMI	CTAG	2 cut(s)	438, 498
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	44
TasI	AATT	5 cut(s)	37, 221, 347, 751, 789
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	4 cut(s)	249, 285, 618, 826
Tru9I	TTAA	4 cut(s)	249, 285, 618, 826
TscAI	CASTG	2 cut(s)	70, 342
TseI	GCWGC	5 cut(s)	193, 371, 589, 695, 821
TspDTI	ATGAA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	70, 342
Van91I	CCANNNNNTGG	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	347, 751
XbaI	TCTAGA	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 593
XspI	CTAG	2 cut(s)	438, 498
ZrmI	AGTACT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.