Prupe.5G030000_v2.0.a1

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
3503416 .. 3508989
5574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G030000.2

Sequence Viewer

Length: 1209 bp
ATGGTTGGTTGGAGCCATCGGTGTCACATTGGGGACGAGGAGAAAATTCCATTTGTGGGTCCGCATCAACGTGCCGGCAGCGGCGTCCGTCCGCAAATAGCTTCCACCAGAAAAAACAACCTCACCGCATCAATAATACAATACGAGACGTACACATACCTCCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTCCCTTCCTCTCCGTCTCTCTCTCTCTTCCGAATCATCGCCTCCTGCTTGTCTCCCCGTTCTTCCCGCAATTCTTAATTCGTATCCAAACACCAGCTTCTCTTTCCATTTTTTTCGAAATTCTCGTCGGGATTTTCTCGGGAAAGTAAGGGTTAGGGTTTGGGAGGGAAGCGAGATGAGCTTTCGGGATCTGGAAGCAGGAAGGGGCTTGGGTTTTTCAAGGCGTGACATCGTCAATGGCAAGCAGGACCCGACCCAAGCCGTGGCCTCAGGCATTTTCCAGATCAACACCGCCGTATCCACCTTTCAGAGGCTCGTCAACACCATCGGTACCCCCAAGGACACGCCCGAGCTCCGCGAAAAGCTGCACAAGACAAGACTACATATTGGTCAATTGGTGAAGAATACTTCAGAAAAACTTAAACAAGTTAGTGAAAGAGATCATCATACTGAAGTCAATGCGAGCAAGAAGATTACAGATGCTAAGCTTGCAAAAGATTTTCAAGCAGTGCTGAGAGAATTTCAGAAGGCTCAACGGCTTGCAGCTGAGAGAGAAACAGCATATGCTCCTTTTGTTCCCCAAGCAGTTCTTCCGTCCAGCTACACTGCTAGTGAGATAGATATAAGCTCAGATAAGAGTCCTGAACAGCGTGCTCTCCTTGTGGAATCTAGAAGACAGGAGGTCGTGCTATTGGACAATGAGATTTCCTTCAATGAGGCTATCATCGAGGAAAGAGAACAAGGAATACAAGAAATCCAGCAGCAAATTGGTGAAGTGAATGAGATTTTTAAAGATCTTGCTATATTGGTTCATGAGCAAGGAACCATGATTGATGATATAGGCTCCAATATTGAGGGTGCCCACGCTGCTACTGGCCAGGCAAAGTCCCAACTTGTTAAGGCCTCAAAGACCCAAAGATCAAATTCATCTCTGACTTGCTTGCTCTTGGTAATATTTGGAATCGTGCTTCTCATTGTGATAGTAGTACTTGCCGCTTAA

Protein Analysis

403

Amino Acids

44.63

Weight (kDa)

8.34

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 539
AccB1I GGYRCC 2 cut(s) 539, 1067
AccB7I CCANNNNNTGG 1 cut(s) 472
AccII CGCG 1 cut(s) 567
AciI CCGC 8 cut(s) 62, 81, 92, 126, 276, 501, 565, 1203
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 1084
AcsI RAATTY 4 cut(s) 45, 328, 728, 1132
AcuI CTGAAG 2 cut(s) 603, 681
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 152, 541, 1197
AfiI CCNNNNNNNGG 3 cut(s) 56, 472, 519
AgsI TTSAA 3 cut(s) 429, 713, 922
AhdI GACNNNNNGTC 1 cut(s) 890
AjnI CCWGG 1 cut(s) 1086
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 9 cut(s) 101, 306, 390, 562, 574, 697, 755, 810, 837
AluI AGCT 9 cut(s) 101, 306, 390, 562, 574, 697, 755, 810, 837
Alw21I GWGCWC 2 cut(s) 564, 865
Alw26I GTCTC 3 cut(s) 140, 230, 266
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 2 cut(s) 347, 557
AoxI GGCC 3 cut(s) 474, 1084, 1110
ApeKI GCWGC 5 cut(s) 78, 574, 752, 970, 1076
ApoI RAATTY 4 cut(s) 45, 328, 728, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
Asp718I GGTACC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 59, 457
AsuHPI GGTGA 3 cut(s) 115, 619, 992
AsuII TTCGAA 1 cut(s) 325
AvaI CYCGRG 2 cut(s) 347, 557
AvaII GGWCC 2 cut(s) 59, 457
AxyI CCTNAGG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 1072
BaeI ACNNNNGTAYC 2 cut(s) 489, 522
BalI TGGCCA 1 cut(s) 1086
BanI GGYRCC 2 cut(s) 539, 1067
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 889
Bbv12I GWGCWC 2 cut(s) 564, 865
BbvI GCAGC 5 cut(s) 90, 561, 764, 982, 1063
BccI CCATC 2 cut(s) 24, 542
BceAI ACGGC 3 cut(s) 455, 488, 761
BciT130I CCWGG 1 cut(s) 1088
BciVI GTATCC 2 cut(s) 303, 517
BcoDI GTCTC 3 cut(s) 140, 230, 266
BfaI CTAG 2 cut(s) 819, 879
BfuI GTATCC 2 cut(s) 303, 517
BglII AGATCT 1 cut(s) 1003
BisI GCNGC 7 cut(s) 79, 82, 575, 753, 971, 1077, 1203
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 7 cut(s) 80, 83, 576, 754, 972, 1078, 1204
BmcAI AGTACT 1 cut(s) 1197
Bme1390I CCNGG 1 cut(s) 1088
Bme18I GGWCC 2 cut(s) 59, 457
BmeRI GACNNNNNGTC 1 cut(s) 890
BmeT110I CYCGRG 2 cut(s) 347, 557
BmgT120I GGNCC 2 cut(s) 59, 457
BmiI GGNNCC 7 cut(s) 14, 60, 459, 541, 1033, 1054, 1069
BmrFI CCNGG 1 cut(s) 1088
BmsI GCATC 3 cut(s) 73, 137, 679
BpiI GAAGAC 1 cut(s) 889
Bpu1102I GCTNAGC 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 471, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 472, 519
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 1087
Bse21I CCTNAGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 1088
BseDI CCNNGG 2 cut(s) 471, 546
BseLI CCNNNNNNNGG 3 cut(s) 56, 472, 519
BseMII CTCAG 4 cut(s) 492, 713, 747, 852
BseNI ACTGG 1 cut(s) 1087
BseRI GAGGAG 2 cut(s) 53, 152
BseSI GKGCMC 1 cut(s) 1072
BseXI GCAGC 5 cut(s) 90, 561, 764, 982, 1063
BsgI GTGCAG 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 3 cut(s) 476, 1086, 1112
BshNI GGYRCC 2 cut(s) 539, 1067
BsiHKAI GWGCWC 2 cut(s) 564, 865
BsiHKCI CYCGRG 2 cut(s) 347, 557
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 47, 1081
BslI CCNNNNNNNGG 3 cut(s) 56, 472, 519
BsmAI GTCTC 3 cut(s) 140, 230, 266
BsmBI CGTCTC 2 cut(s) 140, 230
BsmFI GGGAC 2 cut(s) 47, 1081
BsnI GGCC 3 cut(s) 476, 1086, 1112
BsoBI CYCGRG 2 cut(s) 347, 557
Bsp119I TTCGAA 1 cut(s) 325
Bsp1286I GDGCHC 3 cut(s) 564, 865, 1072
Bsp143I GATC 5 cut(s) 397, 492, 649, 1003, 1127
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 8 cut(s) 62, 81, 92, 126, 276, 501, 565, 1203
BspANI GGCC 3 cut(s) 476, 1086, 1112
BspCNI CTCAG 4 cut(s) 491, 714, 748, 851
BspFNI CGCG 1 cut(s) 567
BspHI TCATGA 1 cut(s) 1021
BspLI GGNNCC 7 cut(s) 14, 60, 459, 541, 1033, 1054, 1069
BspPI GGATC 1 cut(s) 405
BspT104I TTCGAA 1 cut(s) 325
BspT107I GGYRCC 2 cut(s) 539, 1067
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 1087
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 471, 546
BssMI GATC 5 cut(s) 397, 492, 649, 1003, 1127
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 1088
Bst6I CTCTTC 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 325
BstC8I GCNNGC 7 cut(s) 76, 452, 673, 699, 750, 861, 1151
BstDEI CTNAG 5 cut(s) 478, 693, 722, 756, 838
BstDSI CCRYGG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 517
BstFNI CGCG 1 cut(s) 567
BstKTI GATC 5 cut(s) 400, 495, 652, 1006, 1130
BstMAI GTCTC 3 cut(s) 140, 230, 266
BstMBI GATC 5 cut(s) 397, 492, 649, 1003, 1127
BstMWI GCNNNNNNNGC 3 cut(s) 387, 698, 1076
BstNI CCWGG 1 cut(s) 1088
BstSCI CCNGG 1 cut(s) 1086
BstSLI GKGCMC 1 cut(s) 1072
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 5 cut(s) 90, 561, 764, 982, 1063
BstV2I GAAGAC 1 cut(s) 889
BstX2I RGATCY 2 cut(s) 397, 1003
BstYI RGATCY 2 cut(s) 397, 1003
Bsu36I CCTNAGG 1 cut(s) 478
BsuI GTATCC 2 cut(s) 303, 517
BsuRI GGCC 3 cut(s) 476, 1086, 1112
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 231
BtsI GCAGTG 2 cut(s) 723, 813
BtsIMutI CAGTG 2 cut(s) 723, 813
Cac8I GCNNGC 7 cut(s) 76, 452, 673, 699, 750, 861, 1151
CciI TCATGA 1 cut(s) 1021
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 59, 457
CseI GACGC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 151, 540, 1196
CviAII CATG 2 cut(s) 1022, 1036
CviQI GTAC 3 cut(s) 151, 540, 1196
DdeI CTNAG 5 cut(s) 478, 693, 722, 756, 838
DpnI GATC 5 cut(s) 399, 494, 651, 1005, 1129
DpnII GATC 5 cut(s) 397, 492, 649, 1003, 1127
DraI TTTAAA 1 cut(s) 1000
DriI GACNNNNNGTC 1 cut(s) 890
EaeI YGGCCR 1 cut(s) 1084
Eam1104I CTCTTC 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 1112
Eco24I GRGCYC 1 cut(s) 564
Eco47I GGWCC 2 cut(s) 59, 457
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 603, 681
Eco81I CCTNAGG 1 cut(s) 478
Eco88I CYCGRG 2 cut(s) 347, 557
EcoICRI GAGCTC 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 517
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 1086
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 2 cut(s) 140, 230
FaeI CATG 2 cut(s) 1025, 1039
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FaqI GGGAC 2 cut(s) 47, 1081
FatI CATG 2 cut(s) 1021, 1035
FauI CCCGC 1 cut(s) 283
FauNDI CATATG 1 cut(s) 772
Fnu4HI GCNGC 7 cut(s) 79, 82, 575, 753, 971, 1077, 1203
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 7 cut(s) 79, 82, 575, 753, 971, 1077, 1203
FspBI CTAG 2 cut(s) 819, 879
GluI GCNGC 7 cut(s) 79, 82, 575, 753, 971, 1077, 1203
HaeIII GGCC 3 cut(s) 476, 1086, 1112
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 2 cut(s) 1025, 1039
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 4 cut(s) 242, 847, 875, 1170
HpaII CCGG 1 cut(s) 75
HphI GGTGA 3 cut(s) 115, 619, 992
Hpy166II GTNNAC 2 cut(s) 153, 529
Hpy188I TCNGA 6 cut(s) 241, 519, 622, 735, 841, 1143
Hpy188III TCNNGA 8 cut(s) 338, 349, 395, 401, 490, 851, 879, 1022
Hpy8I GTNNAC 2 cut(s) 153, 529
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 4 cut(s) 224, 405, 730, 928
HpyCH4IV ACGT 2 cut(s) 70, 149
HpyCH4V TGCA 3 cut(s) 577, 701, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 387, 698, 1076
HpyF3I CTNAG 5 cut(s) 478, 693, 722, 756, 838
HpySE526I ACGT 2 cut(s) 70, 149
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 2 cut(s) 1025, 1039
KpnI GGTACC 1 cut(s) 543
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 397, 492, 649, 1003, 1127
LmnI GCTCC 4 cut(s) 12, 567, 781, 1058
Lsp1109I GCAGC 5 cut(s) 90, 561, 764, 982, 1063
LweI GCATC 3 cut(s) 73, 137, 679
MaeI CTAG 2 cut(s) 819, 879
MaeII ACGT 2 cut(s) 70, 149
MaeIII GTNAC 2 cut(s) 23, 434
MalI GATC 5 cut(s) 399, 494, 651, 1005, 1129
MboI GATC 5 cut(s) 397, 492, 649, 1003, 1127
MboII GAAGA 6 cut(s) 228, 263, 622, 691, 791, 894
MfeI CAATTG 1 cut(s) 602
MflI RGATCY 2 cut(s) 397, 1003
MhlI GDGCHC 3 cut(s) 564, 865, 1072
MlsI TGGCCA 1 cut(s) 1086
MluCI AATT 8 cut(s) 45, 279, 286, 328, 602, 728, 975, 1132
MluNI TGGCCA 1 cut(s) 1086
MlyI GAGTC 1 cut(s) 856
Mox20I TGGCCA 1 cut(s) 1086
MroNI GCCGGC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 1086
MseI TTAA 5 cut(s) 285, 630, 999, 1107, 1207
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 1086
MspA1I CMGCKG 2 cut(s) 81, 755
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 1088
MunI CAATTG 1 cut(s) 602
MvaI CCWGG 1 cut(s) 1088
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 3 cut(s) 387, 698, 1076
NaeI GCCGGC 1 cut(s) 76
NdeI CATATG 1 cut(s) 772
NdeII GATC 5 cut(s) 397, 492, 649, 1003, 1127
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 1025, 1039
NlaIV GGNNCC 7 cut(s) 14, 60, 459, 541, 1033, 1054, 1069
NmuCI GTSAC 2 cut(s) 23, 434
NspV TTCGAA 1 cut(s) 325
PagI TCATGA 1 cut(s) 1021
PceI AGGCCT 1 cut(s) 1112
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 242, 875, 1170
PflFI GACNNNGTC 1 cut(s) 440
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 7 cut(s) 80, 83, 576, 754, 972, 1078, 1204
PleI GAGTC 1 cut(s) 855
PpsI GAGTC 1 cut(s) 855
PpuMI RGGWCCY 1 cut(s) 457
Psp124BI GAGCTC 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 1086
PspGI CCWGG 1 cut(s) 1086
PspN4I GGNNCC 7 cut(s) 14, 60, 459, 541, 1033, 1054, 1069
PspPI GGNCC 2 cut(s) 59, 457
PspPPI RGGWCCY 1 cut(s) 457
PsrI GAACNNNNNNTAC 2 cut(s) 939, 971
PsuI RGATCY 2 cut(s) 397, 1003
PsyI GACNNNGTC 1 cut(s) 440
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 3 cut(s) 152, 541, 1197
RsaNI GTAC 3 cut(s) 151, 540, 1196
RseI CAYNNNNRTG 1 cut(s) 69
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 5 cut(s) 285, 630, 999, 1107, 1207
SatI GCNGC 7 cut(s) 79, 82, 575, 753, 971, 1077, 1203
Sau3AI GATC 5 cut(s) 397, 492, 649, 1003, 1127
Sau96I GGNCC 2 cut(s) 59, 457
ScaI AGTACT 1 cut(s) 1197
SchI GAGTC 1 cut(s) 856
ScrFI CCNGG 1 cut(s) 1088
SduI GDGCHC 3 cut(s) 564, 865, 1072
SfaNI GCATC 3 cut(s) 73, 137, 679
SfuI TTCGAA 1 cut(s) 325
SinI GGWCC 2 cut(s) 59, 457
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 8 cut(s) 45, 279, 286, 328, 602, 728, 975, 1132
SseBI AGGCCT 1 cut(s) 1112
SsiI CCGC 8 cut(s) 62, 81, 92, 126, 276, 501, 565, 1203
SspI AATATT 2 cut(s) 1060, 1164
SspMI CTAG 2 cut(s) 819, 879
SstI GAGCTC 1 cut(s) 564
StuI AGGCCT 1 cut(s) 1112
StyD4I CCNGG 1 cut(s) 1086
StyI CCWWGG 1 cut(s) 546
TaiI ACGT 2 cut(s) 73, 152
TaqI TCGA 2 cut(s) 325, 936
TasI AATT 8 cut(s) 45, 279, 286, 328, 602, 728, 975, 1132
TatI WGTACW 1 cut(s) 1195
TauI GCSGC 2 cut(s) 84, 1205
TfiI GAWTC 3 cut(s) 242, 875, 1170
Tru1I TTAA 5 cut(s) 285, 630, 999, 1107, 1207
Tru9I TTAA 5 cut(s) 285, 630, 999, 1107, 1207
TscAI CASTG 2 cut(s) 723, 820
TseFI GTSAC 2 cut(s) 23, 434
TseI GCWGC 5 cut(s) 78, 574, 752, 970, 1076
Tsp45I GTSAC 2 cut(s) 23, 434
TspDTI ATGAA 2 cut(s) 1010, 1125
TspGWI ACGGA 3 cut(s) 77, 212, 792
TspRI CASTG 2 cut(s) 723, 820
Tth111I GACNNNGTC 1 cut(s) 440
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 59, 457
XagI CCTNNNNNAGG 1 cut(s) 517
XapI RAATTY 4 cut(s) 45, 328, 728, 1132
XbaI TCTAGA 1 cut(s) 878
XcmI CCANNNNNNNNNTGG 2 cut(s) 974, 1079
XspI CTAG 2 cut(s) 819, 879
ZrmI AGTACT 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.