Rmu_sc0012097.1_g000010

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012097.1
Physical Location & Seq
Forward (+)
27129 .. 32966
5838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012097.1_g000010.1.cds

Sequence Viewer

Length: 1068 bp
atggaggcgaggcgaggcgagttggtgatggaggccgagcgagccgatgctaaggccttagcagcctacaaggtctgctggaacacctgctgttacgattgtgacattctcacctcccacgatgatggcggcgatgcttcatgcggttgcgatccctgtacccgagccccaggctttcctctcatctttctcgaaattctcgccggaattgttctcgggggaagtagcagtgctagggtttgggagggggccgagatgagctttcaggatttccgggatctggaagcgggccgcgggccggctcagtccaggcgagaaccgacccaagccttggcctccggtattttccagatcaccaccgccgtctccacgtttcagaggctcgtcaacaccatcggtacccccaaagacacgcccgagctccgcgagaagctgcacaagacaagactacatattgggcaattagtaaaggatacttcagaaaaacttaaacaagcgagtgaaagagatcatcattctgatgttaatggaagacagaaggttgcagatgctaagcttgcaaaagattttcaagcggtactgagagattttcagaaagctcaacgactttcagctgagagggaaacggcatatgctccttttgttccccaggctgttcttccatcaagctacactgctagtgagataaatgtaacctcagataagaatccagaacagcgtgctctccttgtggaatcgagaagacaggaggtcttgctattagacaatgaaattgcctttaatgaggctatcattgaggaaagagaacaaggaatacaagagatccagcagcaaattggagaagtgaatgagatttttaaagatctggctattctggttcatgaacaagggaccatgatcgaggatattgactctaatattgagagttctcatgctgcaactgcccaggcaaagtcccaccttgtgaaggcctcaaagactcagagatcaaactcgtctctgacttgcttgctgttggtaatatttggaatcgtgcttctcattgtgataatagtacttgcagcttaa

Protein Analysis

355

Amino Acids

39.09

Weight (kDa)

5.26

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AccB7I CCANNNNNTGG 1 cut(s) 331
AccII CGCG 2 cut(s) 294, 426
AciI CCGC 8 cut(s) 129, 144, 287, 292, 294, 360, 424, 575
AclWI GGATC 3 cut(s) 146, 285, 817
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 964
AfaI GTAC 4 cut(s) 160, 400, 579, 1056
AfiI CCNNNNNNNGG 4 cut(s) 280, 298, 331, 967
AgsI TTSAA 1 cut(s) 572
AhdI GACNNNNNGTC 1 cut(s) 749
AjnI CCWGG 4 cut(s) 169, 308, 648, 945
AluBI AGCT 8 cut(s) 261, 421, 433, 556, 599, 614, 669, 1064
AluI AGCT 8 cut(s) 261, 421, 433, 556, 599, 614, 669, 1064
Alw21I GWGCWC 2 cut(s) 423, 724
Alw26I GTCTC 2 cut(s) 370, 1002
AlwI GGATC 3 cut(s) 146, 285, 817
Ama87I CYCGRG 3 cut(s) 162, 215, 416
AoxI GGCC 7 cut(s) 33, 54, 249, 289, 296, 333, 969
ApeKI GCWGC 5 cut(s) 62, 433, 829, 935, 1061
ApoI RAATTY 1 cut(s) 195
Asp718I GGTACC 1 cut(s) 398
AspS9I GGNCC 4 cut(s) 249, 289, 296, 891
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 37, 103, 346
AvaI CYCGRG 3 cut(s) 162, 215, 416
AvaII GGWCC 1 cut(s) 891
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 169, 423
BbsI GAAGAC 2 cut(s) 538, 748
Bbv12I GWGCWC 2 cut(s) 423, 724
BbvI GCAGC 4 cut(s) 74, 420, 841, 922
BccI CCATC 4 cut(s) 22, 119, 401, 670
BceAI ACGGC 2 cut(s) 347, 642
BciT130I CCWGG 4 cut(s) 171, 310, 650, 947
BciVI GTATCC 1 cut(s) 466
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 370, 1002
BfaI CTAG 2 cut(s) 234, 678
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 466
BglII AGATCT 1 cut(s) 862
BisI GCNGC 7 cut(s) 63, 130, 292, 434, 830, 936, 1062
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 7 cut(s) 64, 131, 293, 435, 831, 937, 1063
BmcAI AGTACT 1 cut(s) 1056
Bme1390I CCNGG 5 cut(s) 171, 275, 310, 650, 947
Bme18I GGWCC 1 cut(s) 891
BmeRI GACNNNNNGTC 1 cut(s) 749
BmeT110I CYCGRG 3 cut(s) 162, 215, 416
BmgT120I GGNCC 4 cut(s) 249, 289, 296, 891
BmiI GGNNCC 3 cut(s) 250, 400, 892
BmrFI CCNGG 5 cut(s) 171, 275, 310, 650, 947
BmsI GCATC 3 cut(s) 37, 124, 538
BpiI GAAGAC 2 cut(s) 538, 748
Bpu10I CCTNAGC 2 cut(s) 51, 58
Bpu1102I GCTNAGC 1 cut(s) 552
BpuMI CCSGG 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 705
BsaJI CCNNGG 5 cut(s) 169, 292, 330, 648, 945
BsaWI WCCGGW 1 cut(s) 338
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 298, 331, 967
Bse118I RCCGGY 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 4 cut(s) 171, 310, 650, 947
BseDI CCNNGG 5 cut(s) 169, 292, 330, 648, 945
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 4 cut(s) 280, 298, 331, 967
BseMII CTCAG 5 cut(s) 317, 572, 606, 711, 995
BseXI GCAGC 4 cut(s) 74, 420, 841, 922
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 2 cut(s) 294, 426
BshFI GGCC 7 cut(s) 35, 56, 251, 291, 298, 335, 971
BshNI GGYRCC 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 423, 724
BsiHKCI CYCGRG 3 cut(s) 162, 215, 416
BsiSI CCGG 4 cut(s) 204, 274, 299, 339
BslFI GGGAC 2 cut(s) 904, 940
BslI CCNNNNNNNGG 4 cut(s) 280, 298, 331, 967
BsmAI GTCTC 2 cut(s) 370, 1002
BsmBI CGTCTC 2 cut(s) 370, 1002
BsmFI GGGAC 2 cut(s) 904, 940
BsnI GGCC 7 cut(s) 35, 56, 251, 291, 298, 335, 971
BsoBI CYCGRG 3 cut(s) 162, 215, 416
Bsp1286I GDGCHC 3 cut(s) 169, 423, 724
Bsp143I GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 8 cut(s) 129, 144, 287, 292, 294, 360, 424, 575
BspANI GGCC 7 cut(s) 35, 56, 251, 291, 298, 335, 971
BspCNI CTCAG 5 cut(s) 316, 573, 607, 710, 994
BspFNI CGCG 2 cut(s) 294, 426
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 3 cut(s) 250, 400, 892
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 3 cut(s) 146, 285, 817
BspT107I GGYRCC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 5 cut(s) 169, 292, 330, 648, 945
BssMI GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 4 cut(s) 171, 310, 650, 947
BstC8I GCNNGC 7 cut(s) 42, 289, 296, 300, 558, 720, 1010
BstDEI CTNAG 8 cut(s) 51, 58, 303, 552, 581, 615, 697, 981
BstDSI CCRYGG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 965
BstFNI CGCG 2 cut(s) 294, 426
BstKTI GATC 8 cut(s) 154, 280, 354, 511, 825, 865, 900, 989
BstMAI GTCTC 2 cut(s) 370, 1002
BstMBI GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
BstMWI GCNNNNNNNGC 4 cut(s) 41, 62, 557, 941
BstNI CCWGG 4 cut(s) 171, 310, 650, 947
BstSCI CCNGG 5 cut(s) 169, 273, 308, 648, 945
BstUI CGCG 2 cut(s) 294, 426
BstV1I GCAGC 4 cut(s) 74, 420, 841, 922
BstV2I GAAGAC 2 cut(s) 538, 748
BstX2I RGATCY 3 cut(s) 277, 822, 862
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 3 cut(s) 277, 822, 862
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 7 cut(s) 35, 56, 251, 291, 298, 335, 971
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 1 cut(s) 147
BtsI GCAGTG 2 cut(s) 235, 672
BtsIMutI CAGTG 2 cut(s) 235, 672
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 7 cut(s) 42, 289, 296, 300, 558, 720, 1010
CciI TCATGA 1 cut(s) 880
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 4 cut(s) 249, 289, 296, 891
Cfr42I CCGCGG 1 cut(s) 295
Csp6I GTAC 4 cut(s) 159, 399, 578, 1055
CviAII CATG 4 cut(s) 141, 881, 895, 932
CviQI GTAC 4 cut(s) 159, 399, 578, 1055
DdeI CTNAG 8 cut(s) 51, 58, 303, 552, 581, 615, 697, 981
DpnI GATC 8 cut(s) 153, 279, 353, 510, 824, 864, 899, 988
DpnII GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
DraI TTTAAA 1 cut(s) 859
DraIII CACNNNGTG 1 cut(s) 964
DriI GACNNNNNGTC 1 cut(s) 749
Eam1105I GACNNNNNGTC 1 cut(s) 749
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 330
Eco147I AGGCCT 2 cut(s) 56, 971
Eco24I GRGCYC 2 cut(s) 169, 423
Eco47I GGWCC 1 cut(s) 891
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 3 cut(s) 162, 215, 416
EcoICRI GAGCTC 1 cut(s) 421
EcoNI CCTNNNNNAGG 1 cut(s) 965
EcoRII CCWGG 4 cut(s) 169, 308, 648, 945
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 2 cut(s) 169, 423
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 2 cut(s) 370, 1002
FaeI CATG 4 cut(s) 144, 884, 898, 935
FaiI YATR 7 cut(s) 142, 453, 631, 633, 882, 896, 933
FaqI GGGAC 2 cut(s) 904, 940
FatI CATG 4 cut(s) 140, 880, 894, 931
FauI CCCGC 2 cut(s) 280, 287
FauNDI CATATG 1 cut(s) 631
Fnu4HI GCNGC 7 cut(s) 63, 130, 292, 434, 830, 936, 1062
FriOI GRGCYC 2 cut(s) 169, 423
Fsp4HI GCNGC 7 cut(s) 63, 130, 292, 434, 830, 936, 1062
FspBI CTAG 2 cut(s) 234, 678
GluI GCNGC 7 cut(s) 63, 130, 292, 434, 830, 936, 1062
HaeIII GGCC 7 cut(s) 35, 56, 251, 291, 298, 335, 971
HapII CCGG 4 cut(s) 204, 274, 299, 339
Hin1II CATG 4 cut(s) 144, 884, 898, 935
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 5 cut(s) 706, 734, 911, 979, 1029
HpaII CCGG 4 cut(s) 204, 274, 299, 339
HphI GGTGA 3 cut(s) 37, 103, 346
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 7 cut(s) 378, 481, 520, 594, 700, 984, 1002
Hpy188III TCNNGA 7 cut(s) 191, 266, 281, 349, 710, 738, 881
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 532, 961
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 5 cut(s) 436, 545, 560, 938, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 62, 557, 941
HpyF3I CTNAG 8 cut(s) 51, 58, 303, 552, 581, 615, 697, 981
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 4 cut(s) 144, 884, 898, 935
KpnI GGTACC 1 cut(s) 402
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
KspI CCGCGG 1 cut(s) 295
Kzo9I GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
LmnI GCTCC 2 cut(s) 426, 640
Lsp1109I GCAGC 4 cut(s) 74, 420, 841, 922
LweI GCATC 3 cut(s) 37, 124, 538
MaeI CTAG 2 cut(s) 234, 678
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 3 cut(s) 92, 101, 691
MalI GATC 8 cut(s) 153, 279, 353, 510, 824, 864, 899, 988
MboI GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
MboII GAAGA 3 cut(s) 543, 650, 753
MflI RGATCY 3 cut(s) 277, 822, 862
MhlI GDGCHC 3 cut(s) 169, 423, 724
MluCI AATT 5 cut(s) 195, 207, 461, 771, 834
MlyI GAGTC 2 cut(s) 905, 973
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 5 cut(s) 489, 525, 780, 858, 1066
MslI CAYNNNNRTG 2 cut(s) 123, 519
MspA1I CMGCKG 2 cut(s) 294, 614
MspI CCGG 4 cut(s) 204, 274, 299, 339
MspR9I CCNGG 5 cut(s) 171, 275, 310, 650, 947
MvaI CCWGG 4 cut(s) 171, 310, 650, 947
MvnI CGCG 2 cut(s) 294, 426
MwoI GCNNNNNNNGC 4 cut(s) 41, 62, 557, 941
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 275
NdeI CATATG 1 cut(s) 631
NdeII GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 144, 884, 898, 935
NlaIV GGNNCC 3 cut(s) 250, 400, 892
NmeAIII GCCGAG 2 cut(s) 61, 277
NmuCI GTSAC 1 cut(s) 101
PagI TCATGA 1 cut(s) 880
PaqCI CACCTGC 1 cut(s) 95
PceI AGGCCT 2 cut(s) 56, 971
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 3 cut(s) 706, 734, 1029
PflMI CCANNNNNTGG 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 7 cut(s) 64, 131, 293, 435, 831, 937, 1063
PleI GAGTC 2 cut(s) 905, 973
PpsI GAGTC 2 cut(s) 905, 973
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 4 cut(s) 169, 308, 648, 945
PspGI CCWGG 4 cut(s) 169, 308, 648, 945
PspN4I GGNNCC 3 cut(s) 250, 400, 892
PspPI GGNCC 4 cut(s) 249, 289, 296, 891
PsrI GAACNNNNNNTAC 2 cut(s) 798, 830
PsuI RGATCY 3 cut(s) 277, 822, 862
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 4 cut(s) 160, 400, 579, 1056
RsaNI GTAC 4 cut(s) 159, 399, 578, 1055
RseI CAYNNNNRTG 2 cut(s) 123, 519
SacI GAGCTC 1 cut(s) 423
SacII CCGCGG 1 cut(s) 295
SaqAI TTAA 5 cut(s) 489, 525, 780, 858, 1066
SatI GCNGC 7 cut(s) 63, 130, 292, 434, 830, 936, 1062
Sau3AI GATC 8 cut(s) 151, 277, 351, 508, 822, 862, 897, 986
Sau96I GGNCC 4 cut(s) 249, 289, 296, 891
ScaI AGTACT 1 cut(s) 1056
SchI GAGTC 2 cut(s) 905, 973
ScrFI CCNGG 5 cut(s) 171, 275, 310, 650, 947
SduI GDGCHC 3 cut(s) 169, 423, 724
SfaNI GCATC 3 cut(s) 37, 124, 538
Sfr303I CCGCGG 1 cut(s) 295
SgrBI CCGCGG 1 cut(s) 295
SinI GGWCC 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 123, 519
Sse9I AATT 5 cut(s) 195, 207, 461, 771, 834
SseBI AGGCCT 2 cut(s) 56, 971
SsiI CCGC 8 cut(s) 129, 144, 287, 292, 294, 360, 424, 575
SspI AATATT 2 cut(s) 919, 1023
SspMI CTAG 2 cut(s) 234, 678
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 2 cut(s) 56, 971
StyD4I CCNGG 5 cut(s) 169, 273, 308, 648, 945
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 1 cut(s) 374
TaqI TCGA 3 cut(s) 192, 737, 900
TasI AATT 5 cut(s) 195, 207, 461, 771, 834
TatI WGTACW 1 cut(s) 1054
TauI GCSGC 2 cut(s) 132, 294
TfiI GAWTC 3 cut(s) 706, 734, 1029
Tru1I TTAA 5 cut(s) 489, 525, 780, 858, 1066
Tru9I TTAA 5 cut(s) 489, 525, 780, 858, 1066
TscAI CASTG 2 cut(s) 235, 679
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 5 cut(s) 62, 433, 829, 935, 1061
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 4 cut(s) 129, 783, 869, 897
TspRI CASTG 2 cut(s) 235, 679
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 891
XagI CCTNNNNNAGG 1 cut(s) 965
XapI RAATTY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 833
XspI CTAG 2 cut(s) 234, 678
ZrmI AGTACT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.