Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011240.1

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Forward (+)

32148 .. 36301

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011240.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggaagcatattatttaagtcgggcccgaaaatttcctcggtgtgagttggggcttcctaaattctacacctggcccggccccggccccggccccggccccggccccgtgaccaattatccctgtgcccgagccccaggctttcctctcatctttctcgaaattctcgccggaattgttctcgggggaagtagcagtgctagggtttgggagggggccgagatgagctttcaggatttccgggatctggaagcgggccgcggcccggctcagtccaggcgagaaccgacccaagccttggcctccggcattttccagatcaccaccgccgtctccacgtttcagaggctcgtcaacaccatcggtacccccaaagacacgcccgagctccgcgaaaagctgcacaagacaagactacatattgggcaattagtaaaggatacttcagaaaaacttaaacaagcgagtgaaagagatcatcattctgatgttaatggaagacagaaggttgcagatgctaagcttgcaaaagattttcaagcggtactgagagattttcagaaagctcaacgactttcagctgagagggaaacggcatatgctccttttgttccccaggctgttcttccatcaagctacactgctagtgagataaatgtaacctcagataagaatccagaacagcgtgctctccttgtggaatcgagaagacaggaggtcttgctattagacaatgaaattgcctttaatgaggctatcattgaggaaagagaacaaggaatacaagagatccagcagcaaattggagaagtgaatgagatttttaaagatctggctattctggttcatgaacaagggaccatgatcgaggatattgactctaatattgagagttctcatgctgcaactgcccaggcaaagtcccaccttgtgaaggcctcaaagactcagagatcaaactcgtctctgacttgcttgctgttggtaatatttggaatcgtgcttctcattgtgataatagtacttgcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

344

Amino Acids

38.0

Weight (kDa)

6.21

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccII	CGCG	2 cut(s)	261, 393
AciI	CCGC	6 cut(s)	254, 259, 261, 327, 391, 542
AclWI	GGATC	2 cut(s)	252, 784
AcsI	RAATTY	3 cut(s)	32, 62, 162
AcuI	CTGAAG	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	931
AfaI	GTAC	3 cut(s)	367, 546, 1023
AfiI	CCNNNNNNNGG	8 cut(s)	83, 89, 95, 101, 247, 265, 298, 934
AgsI	TTSAA	1 cut(s)	539
AhdI	GACNNNNNGTC	1 cut(s)	716
AjnI	CCWGG	5 cut(s)	71, 136, 275, 615, 912
AluBI	AGCT	8 cut(s)	228, 388, 400, 523, 566, 581, 636, 1031
AluI	AGCT	8 cut(s)	228, 388, 400, 523, 566, 581, 636, 1031
Alw21I	GWGCWC	2 cut(s)	390, 691
Alw26I	GTCTC	2 cut(s)	337, 969
AlwI	GGATC	2 cut(s)	252, 784
Ama87I	CYCGRG	3 cut(s)	129, 182, 383
ApaI	GGGCCC	1 cut(s)	28
ApeKI	GCWGC	4 cut(s)	400, 796, 902, 1028
ApoI	RAATTY	3 cut(s)	32, 62, 162
Asp718I	GGTACC	1 cut(s)	365
AsuC2I	CCSGG	7 cut(s)	78, 84, 90, 96, 102, 242, 266
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	3 cut(s)	129, 182, 383
AvaII	GGWCC	1 cut(s)	858
BaeGI	GKGCMC	2 cut(s)	28, 130
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	3 cut(s)	28, 136, 390
BbsI	GAAGAC	2 cut(s)	505, 715
Bbv12I	GWGCWC	2 cut(s)	390, 691
BbvI	GCAGC	3 cut(s)	387, 808, 889
BccI	CCATC	2 cut(s)	368, 637
BceAI	ACGGC	2 cut(s)	314, 609
BciT130I	CCWGG	5 cut(s)	73, 138, 277, 617, 914
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	7 cut(s)	78, 84, 90, 96, 102, 242, 266
BcoDI	GTCTC	2 cut(s)	337, 969
BfaI	CTAG	2 cut(s)	201, 645
BfuI	GTATCC	1 cut(s)	433
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	6 cut(s)	259, 262, 401, 797, 903, 1029
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	6 cut(s)	260, 263, 402, 798, 904, 1030
BmcAI	AGTACT	1 cut(s)	1023
Bme18I	GGWCC	1 cut(s)	858
BmeRI	GACNNNNNGTC	1 cut(s)	716
BmeT110I	CYCGRG	3 cut(s)	129, 182, 383
BmiI	GGNNCC	9 cut(s)	26, 82, 88, 94, 100, 106, 217, 367, 859
BmsI	GCATC	1 cut(s)	505
BpiI	GAAGAC	2 cut(s)	505, 715
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuMI	CCSGG	7 cut(s)	78, 84, 90, 96, 102, 242, 266
BsaBI	GATNNNNATC	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	8 cut(s)	83, 89, 95, 101, 247, 265, 298, 934
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	5 cut(s)	73, 138, 277, 617, 914
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	8 cut(s)	83, 89, 95, 101, 247, 265, 298, 934
BseMII	CTCAG	5 cut(s)	284, 539, 573, 678, 962
BseSI	GKGCMC	2 cut(s)	28, 130
BseXI	GCAGC	3 cut(s)	387, 808, 889
BsgI	GTGCAG	1 cut(s)	386
Bsh1236I	CGCG	2 cut(s)	261, 393
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	2 cut(s)	390, 691
BsiHKCI	CYCGRG	3 cut(s)	129, 182, 383
BsiSI	CCGG	9 cut(s)	78, 84, 90, 96, 102, 171, 241, 266, 306
BslFI	GGGAC	2 cut(s)	871, 907
BslI	CCNNNNNNNGG	8 cut(s)	83, 89, 95, 101, 247, 265, 298, 934
BsmAI	GTCTC	2 cut(s)	337, 969
BsmBI	CGTCTC	2 cut(s)	337, 969
BsmFI	GGGAC	2 cut(s)	871, 907
BsoBI	CYCGRG	3 cut(s)	129, 182, 383
Bsp120I	GGGCCC	1 cut(s)	24
Bsp1286I	GDGCHC	5 cut(s)	28, 130, 136, 390, 691
Bsp143I	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	6 cut(s)	254, 259, 261, 327, 391, 542
BspCNI	CTCAG	5 cut(s)	283, 540, 574, 677, 961
BspFNI	CGCG	2 cut(s)	261, 393
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	9 cut(s)	26, 82, 88, 94, 100, 106, 217, 367, 859
BspPI	GGATC	2 cut(s)	252, 784
BspT107I	GGYRCC	1 cut(s)	365
BssMI	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	5 cut(s)	73, 138, 277, 617, 914
BstC8I	GCNNGC	4 cut(s)	256, 525, 687, 977
BstDEI	CTNAG	6 cut(s)	270, 519, 548, 582, 664, 948
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	932
BstFNI	CGCG	2 cut(s)	261, 393
BstKTI	GATC	7 cut(s)	247, 321, 478, 792, 832, 867, 956
BstMAI	GTCTC	2 cut(s)	337, 969
BstMBI	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 908
BstNI	CCWGG	5 cut(s)	73, 138, 277, 617, 914
BstSLI	GKGCMC	2 cut(s)	28, 130
BstUI	CGCG	2 cut(s)	261, 393
BstV1I	GCAGC	3 cut(s)	387, 808, 889
BstV2I	GAAGAC	2 cut(s)	505, 715
BstX2I	RGATCY	3 cut(s)	244, 789, 829
BstYI	RGATCY	3 cut(s)	244, 789, 829
BsuI	GTATCC	1 cut(s)	433
BtgI	CCRYGG	1 cut(s)	259
BtsI	GCAGTG	2 cut(s)	202, 639
BtsIMutI	CAGTG	2 cut(s)	202, 639
Cac8I	GCNNGC	4 cut(s)	256, 525, 687, 977
CciI	TCATGA	1 cut(s)	847
Cfr42I	CCGCGG	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	366, 545, 1022
CviAII	CATG	3 cut(s)	848, 862, 899
CviQI	GTAC	3 cut(s)	366, 545, 1022
DdeI	CTNAG	6 cut(s)	270, 519, 548, 582, 664, 948
DpnI	GATC	7 cut(s)	246, 320, 477, 791, 831, 866, 955
DpnII	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
DraI	TTTAAA	1 cut(s)	826
DraIII	CACNNNGTG	1 cut(s)	931
DriI	GACNNNNNGTC	1 cut(s)	716
Eam1105I	GACNNNNNGTC	1 cut(s)	716
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	938
Eco24I	GRGCYC	3 cut(s)	28, 136, 390
Eco47I	GGWCC	1 cut(s)	858
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	3 cut(s)	129, 182, 383
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	932
EcoRII	CCWGG	5 cut(s)	71, 136, 275, 615, 912
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	3 cut(s)	28, 136, 390
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	2 cut(s)	337, 969
FaeI	CATG	3 cut(s)	851, 865, 902
FaiI	YATR	7 cut(s)	10, 420, 598, 600, 849, 863, 900
FaqI	GGGAC	2 cut(s)	871, 907
FatI	CATG	3 cut(s)	847, 861, 898
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	6 cut(s)	259, 262, 401, 797, 903, 1029
FriOI	GRGCYC	3 cut(s)	28, 136, 390
Fsp4HI	GCNGC	6 cut(s)	259, 262, 401, 797, 903, 1029
FspBI	CTAG	2 cut(s)	201, 645
GluI	GCNGC	6 cut(s)	259, 262, 401, 797, 903, 1029
HapII	CCGG	9 cut(s)	78, 84, 90, 96, 102, 171, 241, 266, 306
Hin1II	CATG	3 cut(s)	851, 865, 902
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	5 cut(s)	673, 701, 878, 946, 996
HpaII	CCGG	9 cut(s)	78, 84, 90, 96, 102, 171, 241, 266, 306
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	7 cut(s)	345, 448, 487, 561, 667, 951, 969
Hpy188III	TCNNGA	7 cut(s)	158, 233, 248, 316, 677, 705, 848
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	499, 928
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	5 cut(s)	403, 512, 527, 905, 1028
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 908
HpyF3I	CTNAG	6 cut(s)	270, 519, 548, 582, 664, 948
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	851, 865, 902
KpnI	GGTACC	1 cut(s)	369
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
LmnI	GCTCC	2 cut(s)	393, 607
Lsp1109I	GCAGC	3 cut(s)	387, 808, 889
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	2 cut(s)	201, 645
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	109, 658
MalI	GATC	7 cut(s)	246, 320, 477, 791, 831, 866, 955
MboI	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
MboII	GAAGA	3 cut(s)	510, 617, 720
MflI	RGATCY	3 cut(s)	244, 789, 829
MhlI	GDGCHC	5 cut(s)	28, 130, 136, 390, 691
MluCI	AATT	8 cut(s)	32, 62, 115, 162, 174, 428, 738, 801
MlyI	GAGTC	2 cut(s)	872, 940
MseI	TTAA	6 cut(s)	17, 456, 492, 747, 825, 1033
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	2 cut(s)	261, 581
MspI	CCGG	9 cut(s)	78, 84, 90, 96, 102, 171, 241, 266, 306
MvaI	CCWGG	5 cut(s)	73, 138, 277, 617, 914
MvnI	CGCG	2 cut(s)	261, 393
MwoI	GCNNNNNNNGC	2 cut(s)	524, 908
NciI	CCSGG	7 cut(s)	78, 84, 90, 96, 102, 242, 266
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
NlaIII	CATG	3 cut(s)	851, 865, 902
NlaIV	GGNNCC	9 cut(s)	26, 82, 88, 94, 100, 106, 217, 367, 859
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	938
PfeI	GAWTC	3 cut(s)	673, 701, 996
PflMI	CCANNNNNTGG	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	6 cut(s)	260, 263, 402, 798, 904, 1030
PleI	GAGTC	2 cut(s)	872, 940
PpsI	GAGTC	2 cut(s)	872, 940
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	5 cut(s)	71, 136, 275, 615, 912
PspGI	CCWGG	5 cut(s)	71, 136, 275, 615, 912
PspN4I	GGNNCC	9 cut(s)	26, 82, 88, 94, 100, 106, 217, 367, 859
PspOMI	GGGCCC	1 cut(s)	24
PsrI	GAACNNNNNNTAC	2 cut(s)	765, 797
PsuI	RGATCY	3 cut(s)	244, 789, 829
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	367, 546, 1023
RsaNI	GTAC	3 cut(s)	366, 545, 1022
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	390
SacII	CCGCGG	1 cut(s)	262
SaqAI	TTAA	6 cut(s)	17, 456, 492, 747, 825, 1033
SatI	GCNGC	6 cut(s)	259, 262, 401, 797, 903, 1029
Sau3AI	GATC	7 cut(s)	244, 318, 475, 789, 829, 864, 953
ScaI	AGTACT	1 cut(s)	1023
SchI	GAGTC	2 cut(s)	872, 940
SduI	GDGCHC	5 cut(s)	28, 130, 136, 390, 691
SfaNI	GCATC	1 cut(s)	505
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	858
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	8 cut(s)	32, 62, 115, 162, 174, 428, 738, 801
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	6 cut(s)	254, 259, 261, 327, 391, 542
SspI	AATATT	2 cut(s)	886, 990
SspMI	CTAG	2 cut(s)	201, 645
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	938
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	159, 704, 867
TasI	AATT	8 cut(s)	32, 62, 115, 162, 174, 428, 738, 801
TatI	WGTACW	1 cut(s)	1021
TauI	GCSGC	2 cut(s)	261, 264
TfiI	GAWTC	3 cut(s)	673, 701, 996
Tru1I	TTAA	6 cut(s)	17, 456, 492, 747, 825, 1033
Tru9I	TTAA	6 cut(s)	17, 456, 492, 747, 825, 1033
TscAI	CASTG	2 cut(s)	202, 646
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	400, 796, 902, 1028
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	750, 836, 864
TspRI	CASTG	2 cut(s)	202, 646
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	858
XagI	CCTNNNNNAGG	1 cut(s)	932
XapI	RAATTY	3 cut(s)	32, 62, 162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	800
XspI	CTAG	2 cut(s)	201, 645
ZrmI	AGTACT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.