Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Reverse (-)

4003667 .. 4006870

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03200.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCTTTCGCGATCTGGAAGCGGGTCGGGGTTCCAATTATTCCCGGCGAGGAGACCTCGGCAATGGAAAGCAGGACCCCACCCAAGCTGTGGCCTCCGGCATTTTCCAGATCAACACCGCCGTATCCACCTTCCAGAGGCTCGTCAACACCATCGGCACCCCAAAGGACACGCCCGAGCTCCGCGAAAAGCTGCACAAGACGAGACTACATATTGGGCAATTGGTGAAGGATACTTCAGAAAAACTTAAACAAGTCAGCGAAAGAGATCATCATACTGAAGTTAATGCAAGCAAGAAGATTACAGATGCTAAGCTCGCAAAAGATTTTCAAGCAGTGCTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATGCTCCTTTTGTTCCTCAAGCTGTTCTTCCTTCCAGTTACACCACTAGCGAGATAGATGTAAACTCAGAAAAGAGTCCGGAACAGCGTGCTCTCCTTGTGGAATCTAGAAGACAAGAGGTTGTGCTATTGGACAACGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAACAGGGAATACAAGAAATCCAGCAGCAAATTGGTGAAGTGAATGATATTTTTAAAGATCTTGCTATACTGGTTCATGAGCAAGGAACCATGATTGATGACATTGGCTCCAATATTGAGGGTGCTCATGCTGCAACTGGGCAGGCGAAGTCTCAACTTGTGAAGGCGTCAAAGACCCAAAGATCAAATTCGTCTCTGAGTTGCTTGCTCTTGGTAATATTTGGAATTGTGCTTCTCATCGTGATAGTAGTACTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

276

Amino Acids

30.36

Weight (kDa)

5.93

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccII	CGCG	2 cut(s)	12, 186
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	3 cut(s)	23, 120, 184
AcsI	RAATTY	2 cut(s)	347, 751
AcuI	CTGAAG	2 cut(s)	222, 300
AcyI	GRCGYC	1 cut(s)	731
AfaI	GTAC	1 cut(s)	816
AfiI	CCNNNNNNNGG	2 cut(s)	91, 138
AgsI	TTSAA	2 cut(s)	332, 541
AluBI	AGCT	8 cut(s)	6, 89, 181, 193, 316, 374, 413, 824
AluI	AGCT	8 cut(s)	6, 89, 181, 193, 316, 374, 413, 824
Alw21I	GWGCWC	3 cut(s)	183, 484, 691
Alw26I	GTCTC	4 cut(s)	48, 199, 720, 762
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	5 cut(s)	193, 371, 589, 695, 821
ApoI	RAATTY	2 cut(s)	347, 751
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	238, 611
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	76
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	3 cut(s)	183, 484, 691
BbvI	GCAGC	4 cut(s)	180, 383, 601, 682
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	107
BciVI	GTATCC	2 cut(s)	136, 226
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	4 cut(s)	48, 199, 720, 762
BfaI	CTAG	2 cut(s)	438, 498
BfuI	GTATCC	2 cut(s)	136, 226
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	5 cut(s)	195, 373, 591, 697, 823
BmcAI	AGTACT	1 cut(s)	816
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	711
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	711
BpiI	GAAGAC	1 cut(s)	508
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 138
Bse1I	ACTGG	3 cut(s)	426, 639, 706
Bse3DI	GCAATG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	91, 138
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	3 cut(s)	366, 471, 752
BseNI	ACTGG	3 cut(s)	426, 639, 706
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	180, 383, 601, 682
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	12, 186
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	3 cut(s)	183, 484, 691
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	46, 99, 470
BslI	CCNNNNNNNGG	2 cut(s)	91, 138
BsmAI	GTCTC	4 cut(s)	48, 199, 720, 762
BsmBI	CGTCTC	1 cut(s)	762
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	3 cut(s)	183, 484, 691
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	5 cut(s)	13, 111, 268, 622, 746
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	3 cut(s)	23, 120, 184
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	367, 470, 753
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	2 cut(s)	12, 186
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	426, 639, 706
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	5 cut(s)	13, 111, 268, 622, 746
BssNI	GRCGYC	1 cut(s)	731
BstACI	GRCGYC	1 cut(s)	731
BstC8I	GCNNGC	5 cut(s)	292, 318, 480, 708, 770
BstDEI	CTNAG	4 cut(s)	312, 375, 457, 761
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstFNI	CGCG	2 cut(s)	12, 186
BstKTI	GATC	5 cut(s)	16, 114, 271, 625, 749
BstMAI	GTCTC	4 cut(s)	48, 199, 720, 762
BstMBI	GATC	5 cut(s)	13, 111, 268, 622, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 695
BstSCI	CCNGG	1 cut(s)	44
BstUI	CGCG	2 cut(s)	12, 186
BstV1I	GCAGC	4 cut(s)	180, 383, 601, 682
BstV2I	GAAGAC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuI	GTATCC	2 cut(s)	136, 226
BsuRI	GGCC	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	5 cut(s)	292, 318, 480, 708, 770
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	720
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	3 cut(s)	641, 655, 692
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	4 cut(s)	312, 375, 457, 761
DpnI	GATC	5 cut(s)	15, 113, 270, 624, 748
DpnII	GATC	5 cut(s)	13, 111, 268, 622, 746
DraI	TTTAAA	1 cut(s)	619
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	222, 300
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	762
FaeI	CATG	3 cut(s)	644, 658, 695
FaiI	YATR	8 cut(s)	213, 276, 391, 393, 632, 642, 656, 693
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	3 cut(s)	640, 654, 691
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
FspBI	CTAG	2 cut(s)	438, 498
GluI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	46, 99, 470
HgaI	GACGC	1 cut(s)	720
Hin1I	GRCGYC	1 cut(s)	731
Hin1II	CATG	3 cut(s)	644, 658, 695
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	466, 494
HpaII	CCGG	3 cut(s)	46, 99, 470
HphI	GGTGA	2 cut(s)	238, 611
Hpy166II	GTNNAC	2 cut(s)	148, 454
Hpy188I	TCNGA	4 cut(s)	241, 354, 460, 762
Hpy188III	TCNNGA	8 cut(s)	11, 17, 109, 136, 470, 498, 641, 805
Hpy8I	GTNNAC	2 cut(s)	148, 454
HpyAV	CCTTC	6 cut(s)	142, 223, 349, 432, 547, 721
HpyCH4V	TGCA	5 cut(s)	196, 290, 371, 698, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 695
HpyF3I	CTNAG	4 cut(s)	312, 375, 457, 761
Hsp92I	GRCGYC	1 cut(s)	731
Hsp92II	CATG	3 cut(s)	644, 658, 695
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	5 cut(s)	13, 111, 268, 622, 746
LmnI	GCTCC	3 cut(s)	186, 400, 677
Lsp1109I	GCAGC	4 cut(s)	180, 383, 601, 682
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	438, 498
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	5 cut(s)	15, 113, 270, 624, 748
MboI	GATC	5 cut(s)	13, 111, 268, 622, 746
MboII	GAAGA	3 cut(s)	310, 410, 513
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	3 cut(s)	183, 484, 691
MluCI	AATT	6 cut(s)	37, 221, 347, 594, 751, 789
MlyI	GAGTC	1 cut(s)	475
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	4 cut(s)	249, 285, 618, 826
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	46, 99, 470
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	12, 186
MwoI	GCNNNNNNNGC	2 cut(s)	317, 695
NciI	CCSGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	5 cut(s)	13, 111, 268, 622, 746
NlaIII	CATG	3 cut(s)	644, 658, 695
NlaIV	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
NmeAIII	GCCGAG	1 cut(s)	39
NruI	TCGCGA	1 cut(s)	12
PagI	TCATGA	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	195, 373, 591, 697, 823
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PpuMI	RGGWCCY	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	5 cut(s)	34, 78, 160, 652, 673
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PsrI	GAACNNNNNNTAC	2 cut(s)	558, 590
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	374
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	249, 285, 618, 826
SatI	GCNGC	5 cut(s)	194, 372, 590, 696, 822
Sau3AI	GATC	5 cut(s)	13, 111, 268, 622, 746
Sau96I	GGNCC	1 cut(s)	76
ScaI	AGTACT	1 cut(s)	816
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	3 cut(s)	183, 484, 691
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	6 cut(s)	37, 221, 347, 594, 751, 789
SsiI	CCGC	3 cut(s)	23, 120, 184
SspI	AATATT	2 cut(s)	679, 783
SspMI	CTAG	2 cut(s)	438, 498
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	44
TasI	AATT	6 cut(s)	37, 221, 347, 594, 751, 789
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	4 cut(s)	249, 285, 618, 826
Tru9I	TTAA	4 cut(s)	249, 285, 618, 826
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	5 cut(s)	193, 371, 589, 695, 821
TspDTI	ATGAA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	2 cut(s)	347, 751
XbaI	TCTAGA	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	2 cut(s)	88, 593
XspI	CTAG	2 cut(s)	438, 498
ZrmI	AGTACT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.