AT4G17890

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012280
Physical Location & Seq
Forward (+)
9936861 .. 9939493
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17890.2

Sequence Viewer

Length: 1242 bp
ATGGCTTCTTCTTCTGCTGACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAAATCAAAATCTGAGAACAAGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCATCGGTTACATATGGGATTTTCCTCTGCATCGATTGTTCAGCTACTCACCGGAATCTTGGTGTTCATATCAGCTTCGTCAGATCAACGAATTTAGACTCTTGGAGCCCGGAGCAGCTCAGGACAATGATGTTTGGTGGTAACAACCGTGCTCAGGTTTTCTTCAAGCAACATGGATGGACTGATGGTGGCAAAATTGAAGCTAAGTATACTTCAAGAGCTGCTGATTTGTATCGGCAGATTCTTGCTAAAGAAGTTGCGAAAGCGATTGCGGAAGAAACTAATTCTGGTCTTCTGTCATCTCCCGTTGCTACTTCTCAGTTACCGGAAGTATCTAATGGGGTTTCTTCTTATTCTGTCAAGGAAGAGTTACCTCTTTCGAAACATGAAGCTACCAGTGCTACTTCTTCGCCTAAAGCTTCTAATACAGTTGTGCCTAGTACGTTTAAGAAACCTATTGGTGCTAAAAGGACAGGAAAAACTGGTGGTCTTGGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATCTCTATGAGCAGAAACCGGAAGAAGTTGCACCGGTTATTCCCGCTGTATCATCAACAAATAACGGGGAAAGCAAATCATCAGCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATCTGGAGGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGCTTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAACTCTTCAAAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATATCTTCAGCTCAGTACTTTGGGGATCAGAACAAAAACGCTGATCTGGAATCAAAAGCTACTCTTCAGAAGTTTGCAGGCTCAGCATCTATCTCAAGCGCTGATTTTTACGGTCACGACCAAGATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCGCAACAAGATCTATCGTCGCTGGTGAACATAGCAGGAGAAACAAAGAAGAAGCTTGGAACTTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCTGTAA

Protein Analysis

413

Amino Acids

44.44

Weight (kDa)

8.78

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 15 - 118 4.3e-35 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17890 AT4G17890
fragaria_vesca FvH4_5g22130
malus_domestica MD00G1122000.v1.1 MD00G1183400.v1.1 MD06G1034600.v1.1
prunus_persica Prupe.5G035300_v2.0.a1
pyrus_communis pycom06g02860 pycom16g24390
rosa_chinensis RchiOBHm_Chr7g0209771
rosa_laevigata RLG00000003094
rosa_multiflora Rmu_sc0001818.1_g000012
rosa_roxburghii Rroxscaffold_3G00248980
rosa_rugosa Rorug07G0116100
rosa_samantha Rh7AG249900 Rh7BG243800 Rh7CG265900 Rh7DG255700
rosa_wichuraiana Rw7G021170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 774
AccI GTMKAC 1 cut(s) 323
AciI CCGC 2 cut(s) 386, 684
AclWI GGATC 1 cut(s) 987
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 3 cut(s) 945, 1004, 1198
AfaI GTAC 4 cut(s) 556, 755, 796, 971
AfeI AGCGCT 1 cut(s) 1054
AfiI CCNNNNNNNGG 1 cut(s) 268
AgeI ACCGGT 1 cut(s) 673
AgsI TTSAA 6 cut(s) 280, 314, 330, 897, 911, 1226
AjnI CCWGG 1 cut(s) 1131
Alw21I GWGCWC 1 cut(s) 268
AlwI GGATC 1 cut(s) 987
Aor51HI AGCGCT 1 cut(s) 1054
ApeKI GCWGC 2 cut(s) 229, 335
ApoI RAATTY 1 cut(s) 205
ArsI GACNNNNNNTTYG 2 cut(s) 935, 967
AsiGI ACCGGT 1 cut(s) 673
AspLEI GCGC 2 cut(s) 1055, 1138
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 155, 1171
AsuII TTCGAA 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 241, 322
BccI CCATC 2 cut(s) 285, 293
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 1133
BcnI CCSGG 1 cut(s) 224
BfaI CTAG 2 cut(s) 552, 1104
BfoI RGCGCY 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 774
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 2 cut(s) 230, 336
BlpI GCTNAGC 1 cut(s) 1036
BlsI GCNGC 2 cut(s) 231, 337
BmcAI AGTACT 1 cut(s) 971
Bme1390I CCNGG 2 cut(s) 224, 1133
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 224, 1133
BmsI GCATC 3 cut(s) 125, 153, 1049
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 795
Bpu10I CCTNAGC 2 cut(s) 233, 267
Bpu1102I GCTNAGC 1 cut(s) 1036
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 2 cut(s) 888, 1033
BpuMI CCSGG 1 cut(s) 224
Bsa29I ATCGAT 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 345
BsaWI WCCGGW 4 cut(s) 165, 439, 658, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 673
Bse1I ACTGG 2 cut(s) 510, 601
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 1 cut(s) 1133
BseCI ATCGAT 1 cut(s) 147
BseGI GGATG 1 cut(s) 296
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 6 cut(s) 60, 247, 281, 446, 980, 1050
BseNI ACTGG 2 cut(s) 510, 601
BseXI GCAGC 2 cut(s) 241, 322
BshTI ACCGGT 1 cut(s) 673
BshVI ATCGAT 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 5 cut(s) 166, 224, 440, 659, 674
BslI CCNNNNNNNGG 1 cut(s) 268
BsmI GAATGC 1 cut(s) 1239
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 224, 268
Bsp143I GATC 5 cut(s) 197, 979, 997, 1108, 1144
Bsp1720I GCTNAGC 1 cut(s) 1036
BspACI CCGC 2 cut(s) 386, 684
BspCNI CTCAG 6 cut(s) 61, 246, 280, 445, 979, 1049
BspDI ATCGAT 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 774
BspPI GGATC 1 cut(s) 987
BspT104I TTCGAA 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 673
BsrI ACTGG 2 cut(s) 510, 601
BssAI RCCGGY 1 cut(s) 673
BssMI GATC 5 cut(s) 197, 979, 997, 1108, 1144
BssNAI GTATAC 1 cut(s) 324
Bst1107I GTATAC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 1133
Bst4CI ACNGT 4 cut(s) 263, 544, 863, 1067
Bst6I CTCTTC 3 cut(s) 474, 898, 1023
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 8 cut(s) 69, 233, 267, 318, 432, 627, 966, 1036
BstF5I GGATG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 1055, 1138
BstKTI GATC 5 cut(s) 200, 982, 1000, 1111, 1147
BstMBI GATC 5 cut(s) 197, 979, 997, 1108, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1037
BstNI CCWGG 1 cut(s) 1133
BstSCI CCNGG 2 cut(s) 222, 1131
BstV1I GCAGC 2 cut(s) 241, 322
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BstZ17I GTATAC 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 517, 1222
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 1 cut(s) 1033
CfoI GCGC 2 cut(s) 1055, 1138
Cfr10I RCCGGY 1 cut(s) 673
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 4 cut(s) 555, 754, 795, 970
CspAI ACCGGT 1 cut(s) 673
CviAII CATG 3 cut(s) 287, 500, 812
CviQI GTAC 4 cut(s) 555, 754, 795, 970
DdeI CTNAG 8 cut(s) 69, 233, 267, 318, 432, 627, 966, 1036
DpnI GATC 5 cut(s) 199, 981, 999, 1110, 1146
DpnII GATC 5 cut(s) 197, 979, 997, 1108, 1144
Eam1104I CTCTTC 3 cut(s) 474, 898, 1023
EarI CTCTTC 3 cut(s) 474, 898, 1023
Eco24I GRGCYC 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 1054
Eco57I CTGAAG 3 cut(s) 945, 1004, 1198
EcoRII CCWGG 1 cut(s) 1131
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 3 cut(s) 290, 503, 815
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 1002, 1034
FatI CATG 3 cut(s) 286, 499, 811
FauI CCCGC 1 cut(s) 691
FauNDI CATATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 2 cut(s) 230, 336
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 230, 336
FspBI CTAG 2 cut(s) 552, 1104
GlaI GCGC 2 cut(s) 1054, 1137
GluI GCNGC 2 cut(s) 230, 336
GsuI CTGGAG 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 1056
HapII CCGG 5 cut(s) 166, 224, 440, 659, 674
HhaI GCGC 2 cut(s) 1055, 1138
Hin1II CATG 3 cut(s) 290, 503, 815
Hin6I GCGC 2 cut(s) 1053, 1136
HinP1I GCGC 2 cut(s) 1053, 1136
HindIII AAGCTT 4 cut(s) 531, 617, 835, 1187
HinfI GANTC 7 cut(s) 103, 169, 212, 355, 914, 1004, 1082
HpaII CCGG 5 cut(s) 166, 224, 440, 659, 674
HphI GGTGA 2 cut(s) 155, 1171
Hpy166II GTNNAC 4 cut(s) 324, 797, 939, 1162
Hpy188I TCNGA 7 cut(s) 50, 70, 197, 847, 919, 984, 1023
Hpy188III TCNNGA 6 cut(s) 235, 330, 774, 1001, 1070, 1226
Hpy8I GTNNAC 4 cut(s) 324, 797, 939, 1162
Hpy99I CGWCG 1 cut(s) 1156
HpyCH4III ACNGT 4 cut(s) 263, 544, 863, 1067
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 5 cut(s) 144, 611, 671, 769, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1037
HpyF3I CTNAG 8 cut(s) 69, 233, 267, 318, 432, 627, 966, 1036
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 3 cut(s) 290, 503, 815
HspAI GCGC 2 cut(s) 1053, 1136
Kzo9I GATC 5 cut(s) 197, 979, 997, 1108, 1144
LmnI GCTCC 4 cut(s) 219, 226, 823, 890
Lsp1109I GCAGC 2 cut(s) 241, 322
LweI GCATC 3 cut(s) 125, 153, 1049
MaeI CTAG 2 cut(s) 552, 1104
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 5 cut(s) 121, 254, 435, 483, 1067
MalI GATC 5 cut(s) 199, 981, 999, 1110, 1146
MboI GATC 5 cut(s) 197, 979, 997, 1108, 1144
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 2 cut(s) 224, 268
MluCI AATT 3 cut(s) 205, 309, 397
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 131, 912
MnlI CCTC 4 cut(s) 149, 498, 751, 770
MseI TTAA 3 cut(s) 561, 807, 1116
MspA1I CMGCKG 2 cut(s) 686, 725
MspI CCGG 5 cut(s) 166, 224, 440, 659, 674
MspR9I CCNGG 2 cut(s) 224, 1133
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 1 cut(s) 1133
MwoI GCNNNNNNNGC 2 cut(s) 512, 1037
NciI CCSGG 1 cut(s) 224
NdeI CATATG 1 cut(s) 127
NdeII GATC 5 cut(s) 197, 979, 997, 1108, 1144
NlaIII CATG 3 cut(s) 290, 503, 815
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 1067
NspV TTCGAA 1 cut(s) 494
PctI GAATGC 1 cut(s) 1239
PfeI GAWTC 6 cut(s) 103, 169, 355, 914, 1004, 1082
PinAI ACCGGT 1 cut(s) 673
PkrI GCNGC 2 cut(s) 231, 337
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 1131
PspGI CCWGG 1 cut(s) 1131
PspN4I GGNNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 1144
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 4 cut(s) 556, 755, 796, 971
RsaNI GTAC 4 cut(s) 555, 754, 795, 970
SaqAI TTAA 3 cut(s) 561, 807, 1116
SatI GCNGC 2 cut(s) 230, 336
Sau3AI GATC 5 cut(s) 197, 979, 997, 1108, 1144
ScaI AGTACT 1 cut(s) 971
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 224, 1133
SduI GDGCHC 2 cut(s) 224, 268
SfaNI GCATC 3 cut(s) 125, 153, 1049
SfuI TTCGAA 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 903, 1048
SmoI CTYRAG 2 cut(s) 903, 1048
Sse9I AATT 3 cut(s) 205, 309, 397
SsiI CCGC 2 cut(s) 386, 684
SspI AATATT 1 cut(s) 1090
SspMI CTAG 2 cut(s) 552, 1104
StyD4I CCNGG 2 cut(s) 222, 1131
TaaI ACNGT 4 cut(s) 263, 544, 863, 1067
TaiI ACGT 1 cut(s) 560
TaqI TCGA 3 cut(s) 87, 147, 494
TasI AATT 3 cut(s) 205, 309, 397
TatI WGTACW 2 cut(s) 753, 969
TfiI GAWTC 6 cut(s) 103, 169, 355, 914, 1004, 1082
Tru1I TTAA 3 cut(s) 561, 807, 1116
Tru9I TTAA 3 cut(s) 561, 807, 1116
TscAI CASTG 2 cut(s) 517, 1222
TseFI GTSAC 1 cut(s) 1067
TseI GCWGC 2 cut(s) 229, 335
Tsp45I GTSAC 1 cut(s) 1067
TspDTI ATGAA 4 cut(s) 170, 516, 720, 936
TspRI CASTG 2 cut(s) 517, 1222
XapI RAATTY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 323
XspI CTAG 2 cut(s) 552, 1104
ZrmI AGTACT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.