RLG00000003094

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012280
Physical Location & Seq
Reverse (-)
44342301 .. 44347176
4876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003094

Sequence Viewer

Length: 1146 bp
ATGGCGTCCGAGATTTTCAATGACAAGAATGCTGTTTTCAAAAAGCTGAAAGCAAAGTCGGAGAACAAGATGTGCTTCGATTGTAACGCGAAGAACCCAACTTGGGCTTCGGTTACATATGGGATCTTTCTCTGCATCGATTGCTCGGCCGTCCATCGCAGTCTCGGCGTTCACATCAGCTTTGTTAGATCTACGAATTTAGACTCCTGGACTCCTGAACAGCTGAGAACAATGACCTTTGGGGGAAATAATCGCGCACAGGTTTTCTTTAAACAGCATGGATGGACAGATGGAGGCAAAATTGAGGCCAAATATACATCACGAGCTGCCGAGTTATATAGGCAGATACTTAATAAAGAAGTAGCAAAAAGTATGGCAGAAGACGCAGGTCTTCCACCATCACCTGTTGCATCTCAGTCGGGACAAGCATCTAATGGGCTTCCTGATATCAAGACCAGTGAAGCAATAAAAGAAAAGCCTATAGCAAGGCAAGAAACACCTGAAGTTTCTGATTCCCCCAAAGCCCCCCATGTATTTGTTACCAGTACCGTCAAGAAGCCCCTTGGTGCTAAGAAAACTGGGAAAACTGGGGGACTTGGTGCTCGCAAACTCACTACAAAGCCAAATGAAAGTCTGTATGATCAGAAGCCTGAAGAACCAGTTATCCCAGTAGTTTCCTCAACCAAAAGCACTCCACCAGCTGTCACACCCCTTGCTTCTCGATTTGAGTATGTAGAAGCTCTTCAAACTACTGATATGAATTCTAATGGTGCTAGTGTAACTGGCCATGTTTCTGCACCCAAGTCATCGAGTTTCTTTGCGGATTTCGGAATGGATAGCAGTTATCCCAAGAGAACTAGTTCAAACTCCTCAAAAGTGCAAATTAGAGAATCTGAAAATAAGGCAAAATCATTCCATCATAGTTTTGTATGTTATCTAGGTTCTGCTGCCATCTCCAGTGCTGACCTTTTTGGTGACAGAGAAGATATCCCTCTTGATCTTACTGCGGGTGACCTTATTAACCGTCTATCTTTTCAGGCACAGCAGGATATCTCCTCTTTAAAAAATATTGCAGGAGAGACCGGGAAGAAGCTTAGCTCCTTGGCATCCAATTTAATGACGGATCTTCAGGACAGAATCCTCTGA

Protein Analysis

382

Amino Acids

41.31

Weight (kDa)

8.99

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 11 - 115 4.1e-36 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17890 AT4G17890
fragaria_vesca FvH4_5g22130
malus_domestica MD00G1122000.v1.1 MD00G1183400.v1.1 MD06G1034600.v1.1
prunus_persica Prupe.5G035300_v2.0.a1
pyrus_communis pycom06g02860 pycom16g24390
rosa_chinensis RchiOBHm_Chr7g0209771
rosa_laevigata RLG00000003094
rosa_multiflora Rmu_sc0001818.1_g000012
rosa_roxburghii Rroxscaffold_3G00248980
rosa_rugosa Rorug07G0116100
rosa_samantha Rh7AG249900 Rh7BG243800 Rh7CG265900 Rh7DG255700
rosa_wichuraiana Rw7G021170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AccII CGCG 2 cut(s) 89, 255
AciI CCGC 2 cut(s) 821, 1007
AclWI GGATC 2 cut(s) 131, 1131
AcoI YGGCCR 2 cut(s) 147, 784
AcsI RAATTY 2 cut(s) 196, 760
AcuI CTGAAG 3 cut(s) 522, 672, 1112
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 4 cut(s) 19, 40, 746, 864
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
AluBI AGCT 8 cut(s) 46, 180, 223, 326, 701, 740, 1093, 1098
AluI AGCT 8 cut(s) 46, 180, 223, 326, 701, 740, 1093, 1098
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 167, 1073
AlwI GGATC 2 cut(s) 131, 1131
AoxI GGCC 3 cut(s) 147, 306, 784
ApeKI GCWGC 2 cut(s) 326, 947
ApoI RAATTY 2 cut(s) 196, 760
Asp700I GAANNNNTTC 2 cut(s) 741, 859
AspLEI GCGC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 1084
AsuHPI GGTGA 3 cut(s) 393, 986, 1022
BalI TGGCCA 1 cut(s) 786
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 383, 387
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 313, 934
BccI CCATC 6 cut(s) 162, 276, 284, 406, 924, 959
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 1 cut(s) 1084
BcoDI GTCTC 2 cut(s) 167, 1073
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 3 cut(s) 774, 858, 938
BfmI CTRYAG 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 377
BglII AGATCT 1 cut(s) 188
BisI GCNGC 2 cut(s) 327, 948
BlpI GCTNAGC 1 cut(s) 1094
BlsI GCNGC 2 cut(s) 328, 949
Bme1390I CCNGG 2 cut(s) 208, 1084
BmrFI CCNGG 2 cut(s) 208, 1084
BmrI ACTGGG 3 cut(s) 588, 597, 662
BmsI GCATC 4 cut(s) 144, 419, 437, 1115
BmuI ACTGGG 3 cut(s) 588, 597, 662
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 2 cut(s) 383, 387
BpmI CTGGAG 1 cut(s) 940
Bpu1102I GCTNAGC 1 cut(s) 1094
BpuMI CCSGG 1 cut(s) 1084
Bsa29I ATCGAT 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1073
BsaJI CCNNGG 2 cut(s) 562, 1101
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 8 cut(s) 456, 543, 583, 592, 659, 668, 787, 957
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 562, 1101
BseGI GGATG 2 cut(s) 287, 1106
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 215, 428
BseNI ACTGG 8 cut(s) 456, 543, 583, 592, 659, 668, 787, 957
BseRI GAGGAG 2 cut(s) 859, 1045
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 313, 934
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 2 cut(s) 89, 255
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 149, 308, 786
BshVI ATCGAT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 1083
BslFI GGGAC 2 cut(s) 435, 606
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 167, 1073
BsmFI GGGAC 2 cut(s) 435, 606
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 3 cut(s) 149, 308, 786
Bso31I GGTCTC 1 cut(s) 1073
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 5 cut(s) 123, 188, 640, 997, 1123
Bsp1720I GCTNAGC 1 cut(s) 1094
BspACI CCGC 2 cut(s) 821, 1007
BspANI GGCC 3 cut(s) 149, 308, 786
BspCNI CTCAG 2 cut(s) 216, 427
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 2 cut(s) 89, 255
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 2 cut(s) 131, 1131
BspQI GCTCTTC 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 1073
BsrI ACTGG 8 cut(s) 456, 543, 583, 592, 659, 668, 787, 957
BssECI CCNNGG 2 cut(s) 562, 1101
BssMI GATC 5 cut(s) 123, 188, 640, 997, 1123
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 562, 1101
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 550, 1025
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 4 cut(s) 224, 414, 570, 1094
BstEII GGTNACC 1 cut(s) 1010
BstF5I GGATG 2 cut(s) 287, 1106
BstFNI CGCG 2 cut(s) 89, 255
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 5 cut(s) 126, 191, 643, 1000, 1126
BstMAI GTCTC 2 cut(s) 167, 1073
BstMBI GATC 5 cut(s) 123, 188, 640, 997, 1123
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 141, 165, 383
BstNI CCWGG 1 cut(s) 208
BstPAI GACNNNNGTC 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 1010
BstSCI CCNGG 2 cut(s) 206, 1082
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 2 cut(s) 89, 255
BstV1I GCAGC 2 cut(s) 313, 934
BstV2I GAAGAC 2 cut(s) 383, 387
BstX2I RGATCY 3 cut(s) 123, 188, 1123
BstYI RGATCY 3 cut(s) 123, 188, 1123
BstZI CGGCCG 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 3 cut(s) 149, 308, 786
BsuTUI ATCGAT 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 2 cut(s) 287, 1106
BtsIMutI CAGTG 2 cut(s) 463, 964
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 604
CfoI GCGC 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 546
CviAII CATG 3 cut(s) 278, 530, 788
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 4 cut(s) 224, 414, 570, 1094
DpnI GATC 5 cut(s) 125, 190, 642, 999, 1125
DpnII GATC 5 cut(s) 123, 188, 640, 997, 1123
DraI TTTAAA 2 cut(s) 271, 1062
EaeI YGGCCR 2 cut(s) 147, 784
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 562, 1101
Eco31I GGTCTC 1 cut(s) 1073
Eco32I GATATC 3 cut(s) 448, 988, 1051
Eco52I CGGCCG 1 cut(s) 147
Eco57I CTGAAG 3 cut(s) 522, 672, 1112
Eco91I GGTNACC 1 cut(s) 1010
EcoO65I GGTNACC 1 cut(s) 1010
EcoRI GAATTC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 3 cut(s) 448, 988, 1051
EcoT14I CCWWGG 2 cut(s) 562, 1101
ErhI CCWWGG 2 cut(s) 562, 1101
FaeI CATG 3 cut(s) 281, 533, 791
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 2 cut(s) 435, 606
FatI CATG 3 cut(s) 277, 529, 787
FauI CCCGC 1 cut(s) 1000
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 2 cut(s) 327, 948
FokI GGATG 2 cut(s) 294, 1093
Fsp4HI GCNGC 2 cut(s) 327, 948
FspBI CTAG 3 cut(s) 774, 858, 938
GlaI GCGC 1 cut(s) 256
GluI GCNGC 2 cut(s) 327, 948
GsuI CTGGAG 1 cut(s) 940
HaeIII GGCC 3 cut(s) 149, 308, 786
HapII CCGG 1 cut(s) 1083
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 281, 533, 791
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 5 cut(s) 203, 211, 512, 890, 1137
HpaII CCGG 1 cut(s) 1083
HphI GGTGA 3 cut(s) 393, 986, 1022
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 7 cut(s) 10, 61, 511, 645, 830, 895, 1145
Hpy188III TCNNGA 9 cut(s) 215, 321, 420, 443, 451, 553, 720, 995, 1130
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 550, 1025
HpyCH4V TGCA 5 cut(s) 135, 410, 797, 880, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 165, 383
HpyF3I CTNAG 4 cut(s) 224, 414, 570, 1094
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 281, 533, 791
HspAI GCGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 5 cut(s) 123, 188, 640, 997, 1123
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 1103
Lsp1109I GCAGC 2 cut(s) 313, 934
LweI GCATC 4 cut(s) 144, 419, 437, 1115
MaeI CTAG 3 cut(s) 774, 858, 938
MaeIII GTNAC 7 cut(s) 83, 112, 538, 703, 778, 974, 1010
MalI GATC 5 cut(s) 125, 190, 642, 999, 1125
MboI GATC 5 cut(s) 123, 188, 640, 997, 1123
MboII GAAGA 8 cut(s) 103, 383, 392, 665, 734, 995, 1099, 1118
MflI RGATCY 3 cut(s) 123, 188, 1123
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 5 cut(s) 196, 300, 760, 882, 1111
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 2 cut(s) 197, 205
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 6 cut(s) 287, 298, 688, 880, 1002, 1066
Mox20I TGGCCA 1 cut(s) 786
MroXI GAANNNNTTC 2 cut(s) 741, 859
MscI TGGCCA 1 cut(s) 786
MseI TTAA 5 cut(s) 270, 351, 1020, 1061, 1115
Msp20I TGGCCA 1 cut(s) 786
MspA1I CMGCKG 2 cut(s) 223, 701
MspI CCGG 1 cut(s) 1083
MspR9I CCNGG 2 cut(s) 208, 1084
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 2 cut(s) 89, 255
MwoI GCNNNNNNNGC 3 cut(s) 141, 165, 383
NciI CCSGG 1 cut(s) 1084
NdeI CATATG 1 cut(s) 118
NdeII GATC 5 cut(s) 123, 188, 640, 997, 1123
NlaIII CATG 3 cut(s) 281, 533, 791
NmeAIII GCCGAG 3 cut(s) 125, 144, 355
NmuCI GTSAC 3 cut(s) 703, 974, 1010
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 741, 859
PfeI GAWTC 3 cut(s) 512, 890, 1137
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 2 cut(s) 328, 949
PleI GAGTC 2 cut(s) 197, 205
PpsI GAGTC 2 cut(s) 197, 205
PshAI GACNNNNGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 206
PspEI GGTNACC 1 cut(s) 1010
PspGI CCWGG 1 cut(s) 206
PsuI RGATCY 3 cut(s) 123, 188, 1123
PvuII CAGCTG 2 cut(s) 223, 701
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 5 cut(s) 270, 351, 1020, 1061, 1115
SatI GCNGC 2 cut(s) 327, 948
Sau3AI GATC 5 cut(s) 123, 188, 640, 997, 1123
SchI GAGTC 2 cut(s) 197, 205
ScrFI CCNGG 2 cut(s) 208, 1084
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 4 cut(s) 144, 419, 437, 1115
SfcI CTRYAG 1 cut(s) 480
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 5 cut(s) 196, 300, 760, 882, 1111
SsiI CCGC 2 cut(s) 821, 1007
SspI AATATT 1 cut(s) 1069
SspMI CTAG 3 cut(s) 774, 858, 938
StyD4I CCNGG 2 cut(s) 206, 1082
StyI CCWWGG 2 cut(s) 562, 1101
TaaI ACNGT 2 cut(s) 550, 1025
TaqI TCGA 4 cut(s) 78, 138, 721, 809
TasI AATT 5 cut(s) 196, 300, 760, 882, 1111
TfiI GAWTC 3 cut(s) 512, 890, 1137
Tru1I TTAA 5 cut(s) 270, 351, 1020, 1061, 1115
Tru9I TTAA 5 cut(s) 270, 351, 1020, 1061, 1115
TscAI CASTG 2 cut(s) 463, 964
TseFI GTSAC 3 cut(s) 703, 974, 1010
TseI GCWGC 2 cut(s) 326, 947
Tsp45I GTSAC 3 cut(s) 703, 974, 1010
TspDTI ATGAA 2 cut(s) 642, 773
TspGWI ACGGA 1 cut(s) 1136
TspRI CASTG 2 cut(s) 463, 964
XapI RAATTY 2 cut(s) 196, 760
XmnI GAANNNNTTC 2 cut(s) 741, 859
XspI CTAG 3 cut(s) 774, 858, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.