RchiOBHm_Chr7g0209771

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012280
Physical Location & Seq
Forward (+)
27246866 .. 27252349
5484 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18772

Sequence Viewer

Length: 1215 bp
ATGGCGTCCGAGATTTTCAATGACAAGAATGCTGTTTTCAAAAAGCTGAAATCGAAGTCGGAGAACAAGATGTGCTTCGATTGTAACGCGAAGAACCCAACTTGGGCTTCAGTTACATACGGGATCTTTCTCTGCATCGATTGCTCGGCCGTCCATCGCAGTCTCGGCGTTCACATCAGCTTTGTTAGATCTACGAATTTAGACTCCTGGACTCCTGAACAGCTGAGAACAATGACCTTTGGGGGAAATAATCGCGCACAGGTTTTCTTTAAACAGCATGGATGGACAGATGGAGGCAAAATTGAGGCCAAATATACATCACGAGCTGCCGAGTTATATAGGCAGATACTTTCTAAAGAAGTAGCAAAAAGTATGGCAGAAGACGCAGGTCTTCCACCATCACCTGTTGCGTCTCAGTCGGGACAAGCATCTAATGGGCTTCCTGATATCAAGACCAGTGAAGCAATAAAAGAAAAGCCTATAGCAAGGCAAGAAACACCTGAAGTTTCTGATTCCCCCAAAGCCCCCCATGTATTTGTTACCAGTACCATCAAGAAGCCCCTTGGTGCTAAGAAAAGTGGGAAAACTGGGGGACTTGGTGCTCGCAAACTCACTACAAAGCCAAATGAAAGTCTGTATGATCAGAAGCCGGAAGAACCAGTTATCCCAGTAGTTTCCTCAACCAAAAGCACTCCACCAGCTGTCACACCCCTTGCTTCTCGATTTGAGTATGTAGAAGCTCTTCAAACTACTGATATAAATTCTAATGGCGCTAGTGTAACCGGCCATGTTTCTGCACCCAAGTCATCGAGTTTCTTTGCGGATTTCGGAATGGATAGCAGTTATCCCAAGAGAACTAGTTCAAACTCCTCAAAAGTGCAAATTCAGGAAACTGATGAGGCAAGGAAGAAATTCACAAATGCAAAATCTATTTCTTCCGCACAATTTTTCGGTGATCAGGGCAAATCTGCTGACGTTGATGCTCAAGCCTCCTTGCAGAAGTTTTCTGGTTCTGCTGCCATCTCCAGTGCTGACCTTTTCGGTGACAGAGAAGATATCCCTCTTGATCTTACTGCGGGTGACCTTATTAACCGTCTATCTTTTCAGGCACAGCAGGATATCTCCTCTTTAAAAAATATTGCAGGAGAGACCGGGAAGAAGCTTAGCTCCTTGGCATCCAATTTAATGACGGATCTTCAGGACAGAATCCTCTGA

Protein Analysis

404

Amino Acids

43.57

Weight (kDa)

8.92

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 11 - 115 3.7e-36 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17890 AT4G17890
fragaria_vesca FvH4_5g22130
malus_domestica MD00G1122000.v1.1 MD00G1183400.v1.1 MD06G1034600.v1.1
prunus_persica Prupe.5G035300_v2.0.a1
pyrus_communis pycom06g02860 pycom16g24390
rosa_chinensis RchiOBHm_Chr7g0209771
rosa_laevigata RLG00000003094
rosa_multiflora Rmu_sc0001818.1_g000012
rosa_roxburghii Rroxscaffold_3G00248980
rosa_rugosa Rorug07G0116100
rosa_samantha Rh7AG249900 Rh7BG243800 Rh7CG265900 Rh7DG255700
rosa_wichuraiana Rw7G021170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 377
AccII CGCG 2 cut(s) 89, 255
AciI CCGC 3 cut(s) 821, 939, 1076
AclWI GGATC 2 cut(s) 131, 1200
AcoI YGGCCR 2 cut(s) 147, 784
AcsI RAATTY 4 cut(s) 196, 760, 882, 911
AcuI CTGAAG 3 cut(s) 93, 522, 1181
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 4 cut(s) 19, 40, 746, 864
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AloI GAACNNNNNNTCC 2 cut(s) 648, 680
AluBI AGCT 8 cut(s) 46, 180, 223, 326, 701, 740, 1162, 1167
AluI AGCT 8 cut(s) 46, 180, 223, 326, 701, 740, 1162, 1167
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 3 cut(s) 167, 417, 1142
AlwI GGATC 2 cut(s) 131, 1200
AoxI GGCC 3 cut(s) 147, 306, 784
ApeKI GCWGC 2 cut(s) 326, 1016
ApoI RAATTY 4 cut(s) 196, 760, 882, 911
Asp700I GAANNNNTTC 3 cut(s) 741, 859, 911
AspLEI GCGC 2 cut(s) 257, 773
AsuC2I CCSGG 1 cut(s) 1153
AsuHPI GGTGA 4 cut(s) 393, 965, 1055, 1091
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 383, 387
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 313, 1003
BccI CCATC 6 cut(s) 162, 276, 284, 406, 557, 1028
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 2 cut(s) 640, 955
BcnI CCSGG 1 cut(s) 1153
BcoDI GTCTC 3 cut(s) 167, 417, 1142
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 2 cut(s) 774, 858
BfmI CTRYAG 1 cut(s) 480
BfoI RGCGCY 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 377
BglII AGATCT 1 cut(s) 188
BisI GCNGC 2 cut(s) 327, 1017
BlpI GCTNAGC 1 cut(s) 1163
BlsI GCNGC 2 cut(s) 328, 1018
Bme1390I CCNGG 2 cut(s) 208, 1153
BmrFI CCNGG 2 cut(s) 208, 1153
BmrI ACTGGG 2 cut(s) 597, 662
BmsI GCATC 4 cut(s) 144, 437, 970, 1184
BmuI ACTGGG 2 cut(s) 597, 662
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 2 cut(s) 383, 387
BpmI CTGGAG 1 cut(s) 1009
Bpu1102I GCTNAGC 1 cut(s) 1163
BpuEI CTTGAG 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 1153
Bsa29I ATCGAT 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1142
BsaJI CCNNGG 2 cut(s) 562, 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 6 cut(s) 456, 543, 592, 659, 668, 1026
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 562, 1170
BseGI GGATG 2 cut(s) 287, 1175
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 215, 428
BseNI ACTGG 6 cut(s) 456, 543, 592, 659, 668, 1026
BseRI GAGGAG 2 cut(s) 859, 1114
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 313, 1003
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 2 cut(s) 89, 255
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 149, 308, 786
BshVI ATCGAT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 3 cut(s) 650, 783, 1152
BslFI GGGAC 2 cut(s) 435, 606
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 3 cut(s) 167, 417, 1142
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 435, 606
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 3 cut(s) 149, 308, 786
Bso31I GGTCTC 1 cut(s) 1142
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
Bsp1720I GCTNAGC 1 cut(s) 1163
BspACI CCGC 3 cut(s) 821, 939, 1076
BspANI GGCC 3 cut(s) 149, 308, 786
BspCNI CTCAG 2 cut(s) 216, 427
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 2 cut(s) 89, 255
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 2 cut(s) 131, 1200
BspQI GCTCTTC 1 cut(s) 747
BspTNI GGTCTC 1 cut(s) 1142
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 6 cut(s) 456, 543, 592, 659, 668, 1026
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 2 cut(s) 562, 1170
BssMI GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 562, 1170
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 1094
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 4 cut(s) 224, 414, 570, 1163
BstEII GGTNACC 1 cut(s) 1079
BstF5I GGATG 2 cut(s) 287, 1175
BstFNI CGCG 2 cut(s) 89, 255
BstH2I RGCGCY 1 cut(s) 774
BstHHI GCGC 2 cut(s) 257, 773
BstKTI GATC 6 cut(s) 126, 191, 643, 958, 1069, 1195
BstMAI GTCTC 3 cut(s) 167, 417, 1142
BstMBI GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 141, 165, 383
BstNI CCWGG 1 cut(s) 208
BstPAI GACNNNNGTC 1 cut(s) 387
BstPI GGTNACC 1 cut(s) 1079
BstSCI CCNGG 2 cut(s) 206, 1151
BstSFI CTRYAG 1 cut(s) 480
BstUI CGCG 2 cut(s) 89, 255
BstV1I GCAGC 2 cut(s) 313, 1003
BstV2I GAAGAC 2 cut(s) 383, 387
BstX2I RGATCY 3 cut(s) 123, 188, 1192
BstYI RGATCY 3 cut(s) 123, 188, 1192
BstZI CGGCCG 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 3 cut(s) 149, 308, 786
BsuTUI ATCGAT 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 2 cut(s) 287, 1175
BtsIMutI CAGTG 2 cut(s) 463, 1033
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 604
CfoI GCGC 2 cut(s) 257, 773
Cfr10I RCCGGY 1 cut(s) 782
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 2 cut(s) 392, 399
Csp6I GTAC 1 cut(s) 546
CviAII CATG 3 cut(s) 278, 530, 788
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 4 cut(s) 224, 414, 570, 1163
DpnI GATC 6 cut(s) 125, 190, 642, 957, 1068, 1194
DpnII GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
DraI TTTAAA 2 cut(s) 271, 1131
EaeI YGGCCR 2 cut(s) 147, 784
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 562, 1170
Eco31I GGTCTC 1 cut(s) 1142
Eco32I GATATC 3 cut(s) 448, 1057, 1120
Eco52I CGGCCG 1 cut(s) 147
Eco57I CTGAAG 3 cut(s) 93, 522, 1181
Eco91I GGTNACC 1 cut(s) 1079
EcoO65I GGTNACC 1 cut(s) 1079
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 3 cut(s) 448, 1057, 1120
EcoT14I CCWWGG 2 cut(s) 562, 1170
ErhI CCWWGG 2 cut(s) 562, 1170
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 3 cut(s) 281, 533, 791
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 2 cut(s) 435, 606
FatI CATG 3 cut(s) 277, 529, 787
FauI CCCGC 1 cut(s) 1069
FbaI TGATCA 2 cut(s) 640, 955
Fnu4HI GCNGC 2 cut(s) 327, 1017
FokI GGATG 2 cut(s) 294, 1162
Fsp4HI GCNGC 2 cut(s) 327, 1017
FspBI CTAG 2 cut(s) 774, 858
GlaI GCGC 2 cut(s) 256, 772
GluI GCNGC 2 cut(s) 327, 1017
GsuI CTGGAG 1 cut(s) 1009
HaeII RGCGCY 1 cut(s) 774
HaeIII GGCC 3 cut(s) 149, 308, 786
HapII CCGG 3 cut(s) 650, 783, 1152
HgaI GACGC 2 cut(s) 392, 399
HhaI GCGC 2 cut(s) 257, 773
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 281, 533, 791
Hin6I GCGC 2 cut(s) 255, 771
HinP1I GCGC 2 cut(s) 255, 771
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 4 cut(s) 203, 211, 512, 1206
HpaII CCGG 3 cut(s) 650, 783, 1152
HphI GGTGA 4 cut(s) 393, 965, 1055, 1091
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 6 cut(s) 10, 61, 511, 645, 830, 1214
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 1094
HpyCH4IV ACGT 1 cut(s) 975
HpyCH4V TGCA 6 cut(s) 135, 797, 880, 923, 997, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 165, 383
HpyF3I CTNAG 4 cut(s) 224, 414, 570, 1163
HpySE526I ACGT 1 cut(s) 975
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 281, 533, 791
HspAI GCGC 2 cut(s) 255, 771
Ksp22I TGATCA 2 cut(s) 640, 955
Kzo9I GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 1172
Lsp1109I GCAGC 2 cut(s) 313, 1003
LweI GCATC 4 cut(s) 144, 437, 970, 1184
MaeI CTAG 2 cut(s) 774, 858
MaeII ACGT 1 cut(s) 975
MaeIII GTNAC 7 cut(s) 83, 112, 538, 703, 778, 1043, 1079
MalI GATC 6 cut(s) 125, 190, 642, 957, 1068, 1194
MboI GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
MflI RGATCY 3 cut(s) 123, 188, 1192
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 7 cut(s) 196, 300, 760, 882, 911, 944, 1180
MlyI GAGTC 2 cut(s) 197, 205
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 8 cut(s) 287, 298, 688, 880, 892, 1000, 1071, 1135
MroXI GAANNNNTTC 3 cut(s) 741, 859, 911
MseI TTAA 4 cut(s) 270, 1089, 1130, 1184
MspA1I CMGCKG 2 cut(s) 223, 701
MspI CCGG 3 cut(s) 650, 783, 1152
MspR9I CCNGG 2 cut(s) 208, 1153
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 2 cut(s) 89, 255
MwoI GCNNNNNNNGC 3 cut(s) 141, 165, 383
NciI CCSGG 1 cut(s) 1153
NdeII GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
NlaIII CATG 3 cut(s) 281, 533, 791
NmeAIII GCCGAG 3 cut(s) 125, 144, 355
NmuCI GTSAC 3 cut(s) 703, 1043, 1079
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 3 cut(s) 741, 859, 911
PfeI GAWTC 2 cut(s) 512, 1206
PfoI TCCNGGA 1 cut(s) 206
PkrI GCNGC 2 cut(s) 328, 1018
PleI GAGTC 2 cut(s) 197, 205
PpsI GAGTC 2 cut(s) 197, 205
PshAI GACNNNNGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 206
PspEI GGTNACC 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 206
PsuI RGATCY 3 cut(s) 123, 188, 1192
PvuII CAGCTG 2 cut(s) 223, 701
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 4 cut(s) 270, 1089, 1130, 1184
SatI GCNGC 2 cut(s) 327, 1017
Sau3AI GATC 6 cut(s) 123, 188, 640, 955, 1066, 1192
SchI GAGTC 2 cut(s) 197, 205
ScrFI CCNGG 2 cut(s) 208, 1153
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 4 cut(s) 144, 437, 970, 1184
SfcI CTRYAG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 7 cut(s) 196, 300, 760, 882, 911, 944, 1180
SsiI CCGC 3 cut(s) 821, 939, 1076
SspI AATATT 1 cut(s) 1138
SspMI CTAG 2 cut(s) 774, 858
StyD4I CCNGG 2 cut(s) 206, 1151
StyI CCWWGG 2 cut(s) 562, 1170
TaaI ACNGT 1 cut(s) 1094
TaiI ACGT 1 cut(s) 978
TaqI TCGA 5 cut(s) 53, 78, 138, 721, 809
TasI AATT 7 cut(s) 196, 300, 760, 882, 911, 944, 1180
TfiI GAWTC 2 cut(s) 512, 1206
Tru1I TTAA 4 cut(s) 270, 1089, 1130, 1184
Tru9I TTAA 4 cut(s) 270, 1089, 1130, 1184
TscAI CASTG 2 cut(s) 463, 1033
TseFI GTSAC 3 cut(s) 703, 1043, 1079
TseI GCWGC 2 cut(s) 326, 1016
Tsp45I GTSAC 3 cut(s) 703, 1043, 1079
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 1 cut(s) 1205
TspRI CASTG 2 cut(s) 463, 1033
XapI RAATTY 4 cut(s) 196, 760, 882, 911
XmnI GAANNNNTTC 3 cut(s) 741, 859, 911
XspI CTAG 2 cut(s) 774, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.