Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012280

Physical Location & Seq

Genomic Coordinates Reverse (-)

4001265 .. 4007188

Gene Structure 5924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGTCCGAAATCTTCAATGACAAGAACGCTGTTTTCAGAAAACTGAAAGCAAAGTCAGAAAACAAGATGTGTTTCGATTGCAATGCAAAGAACCCAACTTGGGCCTCGGTTACATATGGGATCTTTCTCTGCATCGATTGCTCGGCCGCTCACCGCAGTCTCGGCGTTCACATCAGCTTTGTTAGATCCACAAATTTAGACTCATGGACTCCTGAACAGCTTAAAACGATGAGCTTCGGTGGAAACAACCGCGCACAGGTTTTCTTTAAGCAGCATGGATGGACGGATGGAGGCAAAATTGAGGCAAAATATACATCAAGAGCTGCCGATTTATACAGGCAGATGCTTTCTAAAGAAGTTGCCAAAAGTATGGCAGAAGAGGCAGGTCTTCCGTCATCACCTGTTGCATCTCAGTCAGGACAAGCATCTAACGGGCTTCCTGATGTCAAGACCAGTGAAGCTCCAAAAGAAACATCTTTAGCAAGGAAAGAAACCCCTGAAGTCTCTGCTCCCCCGAAAGCCCCCCATACATTTGTTACCAGTACTGTCAAGAAGCCTCTTGGTGCTAAGAAAACTGGGAAGACTGGGGGGCTTGGTGCTCGCAAACTTACTACAAAGTCAAGTGAAAGCCTGTACGATCAGAAACCTGAAGAACCTGTTATACCAGTGCCTTCCTCAACTAACAGCACTCCAACAACAGCTGGCTCGTCCTTTGTGTCTCGTTTTGAGTATGTAGAAATTATCCAAAATCCTGAGACGAATCCCAATGGCGCTCATGTAATTAGTCATATTGCTCCACCAAAGTCGTCAAATTTCTTTGCGGATTTTGGAATGGACAGTAATTTTCCCAAGAGAACTAGTTCAAATTCCTCCAAAGTTCAAATTCAGGAAACTGATGAAGCAAGGAAGAAATTCACAAATGCAAAATCTATCTCTTCCGCACAATTTTTTGGTGATCAGAACAAATCTGCTGATGTTGATGCTCAAGCCTCCTTGCAGAAGTTCTCGGGTTCCGCTGCCATCTCAAGTGCTGATCTATTTGGCGACAGGGATGATAATTTGCCCCTTGATCTTACGGCAAGTGACCTTATCAACCGACTGTCTTTTCAGGCACAACAGGATATCTCTTCCCTAAAAAACATTGCTGGAGAGACCGGGAAGAAGCTTAGCTCCTTGGCATCCAATTTAATGACGGATCTTCAGGACAGAATCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap

Protein Analysis

407

Amino Acids

43.87

Weight (kDa)

8.93

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17890 AT4G17890
fragaria_vesca	FvH4_5g22130
malus_domestica	MD00G1122000.v1.1 MD00G1183400.v1.1 MD06G1034600.v1.1
prunus_persica	Prupe.5G035300_v2.0.a1
pyrus_communis	pycom06g02860 pycom16g24390
rosa_chinensis	RchiOBHm_Chr7g0209771
rosa_laevigata	RLG00000003094
rosa_multiflora	Rmu_sc0001818.1_g000012
rosa_roxburghii	Rroxscaffold_3G00248980
rosa_rugosa	Rorug07G0116100
rosa_samantha	Rh7AG249900 Rh7BG243800 Rh7CG265900 Rh7DG255700
rosa_wichuraiana	Rw7G021170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	1 cut(s)	255
AciI	CCGC	6 cut(s)	150, 157, 253, 824, 942, 1017
AclWI	GGATC	3 cut(s)	131, 183, 1206
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	5 cut(s)	196, 814, 868, 885, 914
AcuI	CTGAAG	3 cut(s)	522, 672, 1187
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	547, 638
AfiI	CCNNNNNNNGG	2 cut(s)	103, 259
AgsI	TTSAA	3 cut(s)	19, 867, 884
AhlI	ACTAGT	1 cut(s)	860
AluBI	AGCT	8 cut(s)	180, 223, 237, 326, 464, 704, 1168, 1173
AluI	AGCT	8 cut(s)	180, 223, 237, 326, 464, 704, 1168, 1173
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	5 cut(s)	167, 511, 726, 752, 1148
AlwI	GGATC	3 cut(s)	131, 183, 1206
Ama87I	CYCGRG	1 cut(s)	1009
AoxI	GGCC	2 cut(s)	105, 147
ApeKI	GCWGC	3 cut(s)	274, 326, 1019
ApoI	RAATTY	5 cut(s)	196, 814, 868, 885, 914
Asp700I	GAANNNNTTC	2 cut(s)	862, 914
AspLEI	GCGC	2 cut(s)	257, 776
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	1159
AsuHPI	GGTGA	3 cut(s)	146, 393, 968
AvaI	CYCGRG	1 cut(s)	1009
BbsI	GAAGAC	2 cut(s)	383, 590
Bbv12I	GWGCWC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	286, 313, 1006
BccI	CCATC	3 cut(s)	276, 284, 1031
BceAI	ACGGC	1 cut(s)	1095
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BclI	TGATCA	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	1159
BcoDI	GTCTC	5 cut(s)	167, 511, 726, 752, 1148
BcuI	ACTAGT	1 cut(s)	860
BfaI	CTAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	777
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	4 cut(s)	150, 275, 327, 1020
BlpI	GCTNAGC	1 cut(s)	1169
BlsI	GCNGC	4 cut(s)	151, 276, 328, 1021
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	1 cut(s)	1159
BmeT110I	CYCGRG	1 cut(s)	1009
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	1015
BmrFI	CCNGG	1 cut(s)	1159
BmrI	ACTGGG	2 cut(s)	588, 597
BmsI	GCATC	6 cut(s)	144, 336, 419, 437, 973, 1190
BmuI	ACTGGG	2 cut(s)	588, 597
BpiI	GAAGAC	2 cut(s)	383, 590
BpmI	CTGGAG	1 cut(s)	1170
Bpu1102I	GCTNAGC	1 cut(s)	1169
BpuEI	CTTGAG	2 cut(s)	972, 1012
BpuMI	CCSGG	1 cut(s)	1159
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	2 cut(s)	108, 1176
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 259
Bse1I	ACTGG	5 cut(s)	456, 543, 583, 592, 668
Bse3DI	GCAATG	2 cut(s)	91, 1143
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	108, 1176
BseGI	GGATG	4 cut(s)	287, 295, 1060, 1181
BseLI	CCNNNNNNNGG	2 cut(s)	103, 259
BseMI	GCAATG	2 cut(s)	91, 1143
BseMII	CTCAG	2 cut(s)	428, 747
BseNI	ACTGG	5 cut(s)	456, 543, 583, 592, 668
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	286, 313, 1006
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	107, 149
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	1009
BsiSI	CCGG	1 cut(s)	1158
BslI	CCNNNNNNNGG	2 cut(s)	103, 259
BsmAI	GTCTC	5 cut(s)	167, 511, 726, 752, 1148
BsmBI	CGTCTC	1 cut(s)	752
BsnI	GGCC	2 cut(s)	107, 149
Bso31I	GGTCTC	1 cut(s)	1148
BsoBI	CYCGRG	1 cut(s)	1009
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp143I	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
Bsp1720I	GCTNAGC	1 cut(s)	1169
BspACI	CCGC	6 cut(s)	150, 157, 253, 824, 942, 1017
BspANI	GGCC	2 cut(s)	107, 149
BspCNI	CTCAG	2 cut(s)	427, 748
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	1015
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	3 cut(s)	131, 183, 1206
BspTNI	GGTCTC	1 cut(s)	1148
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	91, 1143
BsrI	ACTGG	5 cut(s)	456, 543, 583, 592, 668
BssECI	CCNNGG	2 cut(s)	108, 1176
BssMI	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	1176
Bst4CI	ACNGT	3 cut(s)	550, 842, 1104
Bst6I	CTCTTC	3 cut(s)	375, 943, 1135
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	604, 706
BstDEI	CTNAG	4 cut(s)	414, 570, 756, 1169
BstF5I	GGATG	4 cut(s)	287, 295, 1060, 1181
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	777
BstHHI	GCGC	2 cut(s)	257, 776
BstKTI	GATC	7 cut(s)	126, 191, 643, 961, 1039, 1075, 1201
BstMAI	GTCTC	5 cut(s)	167, 511, 726, 752, 1148
BstMBI	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 165, 383
BstSCI	CCNGG	1 cut(s)	1157
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	3 cut(s)	286, 313, 1006
BstV2I	GAAGAC	2 cut(s)	383, 590
BstX2I	RGATCY	3 cut(s)	123, 188, 1198
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	3 cut(s)	123, 188, 1198
BstZI	CGGCCG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	107, 149
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	4 cut(s)	287, 295, 1060, 1181
BtsIMutI	CAGTG	2 cut(s)	463, 675
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	604, 706
CfoI	GCGC	2 cut(s)	257, 776
Cfr13I	GGNCC	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	546, 637
CviAII	CATG	3 cut(s)	207, 278, 779
CviQI	GTAC	2 cut(s)	546, 637
DdeI	CTNAG	4 cut(s)	414, 570, 756, 1169
DpnI	GATC	7 cut(s)	125, 190, 642, 960, 1038, 1074, 1200
DpnII	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	375, 943, 1135
EarI	CTCTTC	3 cut(s)	375, 943, 1135
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	1176
Eco31I	GGTCTC	1 cut(s)	1148
Eco32I	GATATC	1 cut(s)	1126
Eco52I	CGGCCG	1 cut(s)	147
Eco57I	CTGAAG	3 cut(s)	522, 672, 1187
Eco88I	CYCGRG	1 cut(s)	1009
EcoRV	GATATC	1 cut(s)	1126
EcoT14I	CCWWGG	1 cut(s)	1176
ErhI	CCWWGG	1 cut(s)	1176
Esp3I	CGTCTC	1 cut(s)	752
FaeI	CATG	3 cut(s)	210, 281, 782
FatI	CATG	3 cut(s)	206, 277, 778
FauNDI	CATATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	4 cut(s)	150, 275, 327, 1020
FokI	GGATG	4 cut(s)	294, 302, 1067, 1168
Fsp4HI	GCNGC	4 cut(s)	150, 275, 327, 1020
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	2 cut(s)	256, 775
GluI	GCNGC	4 cut(s)	150, 275, 327, 1020
GsuI	CTGGAG	1 cut(s)	1170
HaeII	RGCGCY	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	107, 149
HapII	CCGG	1 cut(s)	1158
HhaI	GCGC	2 cut(s)	257, 776
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	210, 281, 782
Hin6I	GCGC	2 cut(s)	255, 774
HinP1I	GCGC	2 cut(s)	255, 774
HindIII	AAGCTT	1 cut(s)	1166
HinfI	GANTC	4 cut(s)	203, 211, 763, 1212
HpaII	CCGG	1 cut(s)	1158
HphI	GGTGA	3 cut(s)	146, 393, 968
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	10, 41, 61, 645, 963
Hpy188III	TCNNGA	9 cut(s)	215, 321, 420, 443, 451, 553, 755, 890, 1205
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	3 cut(s)	550, 842, 1104
HpyCH4V	TGCA	6 cut(s)	84, 89, 135, 410, 926, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 165, 383
HpyF3I	CTNAG	4 cut(s)	414, 570, 756, 1169
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	210, 281, 782
HspAI	GCGC	2 cut(s)	255, 774
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
LmnI	GCTCC	4 cut(s)	469, 517, 802, 1178
Lsp1109I	GCAGC	3 cut(s)	286, 313, 1006
LweI	GCATC	6 cut(s)	144, 336, 419, 437, 973, 1190
MaeI	CTAG	1 cut(s)	861
MaeIII	GTNAC	3 cut(s)	112, 538, 1085
MalI	GATC	7 cut(s)	125, 190, 642, 960, 1038, 1074, 1200
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
MflI	RGATCY	3 cut(s)	123, 188, 1198
MhlI	GDGCHC	1 cut(s)	604
MlyI	GAGTC	2 cut(s)	197, 205
MmeI	TCCRAC	1 cut(s)	719
MnlI	CCTC	8 cut(s)	118, 287, 298, 376, 570, 688, 883, 1003
MroXI	GAANNNNTTC	2 cut(s)	862, 914
MseI	TTAA	3 cut(s)	225, 270, 1190
MspA1I	CMGCKG	2 cut(s)	704, 1019
MspI	CCGG	1 cut(s)	1158
MspR9I	CCNGG	1 cut(s)	1159
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	141, 165, 383
NciI	CCSGG	1 cut(s)	1159
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
NlaIII	CATG	3 cut(s)	210, 281, 782
NlaIV	GGNNCC	1 cut(s)	1015
NmeAIII	GCCGAG	2 cut(s)	125, 144
NmuCI	GTSAC	1 cut(s)	1085
PdmI	GAANNNNTTC	2 cut(s)	862, 914
PfeI	GAWTC	2 cut(s)	763, 1212
PkrI	GCNGC	4 cut(s)	151, 276, 328, 1021
PleI	GAGTC	2 cut(s)	197, 205
PpsI	GAGTC	2 cut(s)	197, 205
PspN4I	GGNNCC	1 cut(s)	1015
PspPI	GGNCC	1 cut(s)	105
PsrI	GAACNNNNNNTAC	2 cut(s)	648, 680
PsuI	RGATCY	3 cut(s)	123, 188, 1198
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	2 cut(s)	547, 638
RsaNI	GTAC	2 cut(s)	546, 637
SaqAI	TTAA	3 cut(s)	225, 270, 1190
SatI	GCNGC	4 cut(s)	150, 275, 327, 1020
Sau3AI	GATC	7 cut(s)	123, 188, 640, 958, 1036, 1072, 1198
Sau96I	GGNCC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	2 cut(s)	197, 205
ScrFI	CCNGG	1 cut(s)	1159
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	6 cut(s)	144, 336, 419, 437, 973, 1190
SmlI	CTYRAG	2 cut(s)	987, 1027
SmoI	CTYRAG	2 cut(s)	987, 1027
SpeI	ACTAGT	1 cut(s)	860
SsiI	CCGC	6 cut(s)	150, 157, 253, 824, 942, 1017
SspMI	CTAG	1 cut(s)	861
StyD4I	CCNGG	1 cut(s)	1157
StyI	CCWWGG	1 cut(s)	1176
TaaI	ACNGT	3 cut(s)	550, 842, 1104
TaqI	TCGA	2 cut(s)	78, 138
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	763, 1212
Tru1I	TTAA	3 cut(s)	225, 270, 1190
Tru9I	TTAA	3 cut(s)	225, 270, 1190
TscAI	CASTG	2 cut(s)	463, 675
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	3 cut(s)	274, 326, 1019
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	1 cut(s)	915
TspGWI	ACGGA	3 cut(s)	302, 384, 1211
TspRI	CASTG	2 cut(s)	463, 675
XapI	RAATTY	5 cut(s)	196, 814, 868, 885, 914
XmnI	GAANNNNTTC	2 cut(s)	862, 914
XspI	CTAG	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.